RNA–Protein interactions for RNA: ENST00000551008.5

NPAS3-209, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 1 (best) BASIC

Gene NPAS3, Length 1,002 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-209ENST00000551008 PREX2Q70Z35 1606 aa21.22■□□□□ 0.99
NPAS3-209ENST00000551008 ADAMTSL3P82987 1691 aa21.22■□□□□ 0.99
NPAS3-209ENST00000551008 CDC42BPAQ5VT25 1732 aa21.21■□□□□ 0.99
NPAS3-209ENST00000551008 CDK11AQ9UQ88 783 aaPredicted RBP21.2■□□□□ 0.98
NPAS3-209ENST00000551008 BCORL1Q5H9F3 1711 aa21.2■□□□□ 0.98
NPAS3-209ENST00000551008 CEP162Q5TB80 1403 aa21.2■□□□□ 0.98
NPAS3-209ENST00000551008 POGZQ7Z3K3 1410 aa21.2■□□□□ 0.98
NPAS3-209ENST00000551008 SCAPERQ9BY12 1400 aa21.18■□□□□ 0.98
NPAS3-209ENST00000551008 YEATS2Q9ULM3 1422 aa21.18■□□□□ 0.98
NPAS3-209ENST00000551008 ARHGAP5Q13017 1502 aa21.17■□□□□ 0.98
NPAS3-209ENST00000551008 ZFYVE16Q7Z3T8 1539 aa21.15■□□□□ 0.98
NPAS3-209ENST00000551008 KDM5CP41229 1560 aa21.14■□□□□ 0.97
NPAS3-209ENST00000551008 MADDQ8WXG6 1647 aa21.12■□□□□ 0.97
NPAS3-209ENST00000551008 ABCC1P33527 1531 aa21.12■□□□□ 0.97
NPAS3-209ENST00000551008 MAGI2Q86UL8 1455 aa21.12■□□□□ 0.97
NPAS3-209ENST00000551008 ITSN2Q9NZM3 1697 aa21.12■□□□□ 0.97
NPAS3-209ENST00000551008 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
NPAS3-209ENST00000551008 EFCAB2Q5VUJ9 269 aa21.11■□□□□ 0.97
NPAS3-209ENST00000551008 LOC105371045A0A1W2PR82 267 aa21.08■□□□□ 0.97
NPAS3-209ENST00000551008 SAMD9LQ8IVG5 1584 aa21.07■□□□□ 0.96
NPAS3-209ENST00000551008 HECW2Q9P2P5 1572 aa21.07■□□□□ 0.96
NPAS3-209ENST00000551008 ZNF518AQ6AHZ1 1483 aa21.07■□□□□ 0.96
NPAS3-209ENST00000551008 GPATCH8Q9UKJ3 1502 aaKnown RBP21.06■□□□□ 0.96
NPAS3-209ENST00000551008 PTPRMP28827 1452 aa21.06■□□□□ 0.96
NPAS3-209ENST00000551008 RIMS1Q86UR5 1692 aaKnown RBP21.05■□□□□ 0.96
NPAS3-209ENST00000551008 TRAPPC8Q9Y2L5 1435 aa21.04■□□□□ 0.96
NPAS3-209ENST00000551008 ABCA6Q8N139 1617 aa21.04■□□□□ 0.96
NPAS3-209ENST00000551008 DIP2CQ9Y2E4 1556 aa21.04■□□□□ 0.96
NPAS3-209ENST00000551008 TIAM1Q13009 1591 aa21.02■□□□□ 0.96
NPAS3-209ENST00000551008 EHBP1L1Q8N3D4 1523 aa21.02■□□□□ 0.96
NPAS3-209ENST00000551008 KIDINS220Q9ULH0 1771 aa21.02■□□□□ 0.96
NPAS3-209ENST00000551008 AFAP1Q8N556 730 aa21.01■□□□□ 0.95
NPAS3-209ENST00000551008 ATP10AO60312 1499 aa21.01■□□□□ 0.95
NPAS3-209ENST00000551008 SYCP2Q9BX26 1530 aa20.99■□□□□ 0.95
NPAS3-209ENST00000551008 C9orf84Q5VXU9 1444 aa20.99■□□□□ 0.95
NPAS3-209ENST00000551008 FER1L4A9Z1Z3 1794 aa20.99■□□□□ 0.95
NPAS3-209ENST00000551008 MLH3Q9UHC1 1453 aa20.99■□□□□ 0.95
NPAS3-209ENST00000551008 REREQ9P2R6 1566 aa20.98■□□□□ 0.95
NPAS3-209ENST00000551008 ARID4BQ4LE39 1312 aaPredicted RBP20.98■□□□□ 0.95
NPAS3-209ENST00000551008 MTUS2Q5JR59 1369 aa20.97■□□□□ 0.95
NPAS3-209ENST00000551008 VPS8Q8N3P4 1428 aa20.95■□□□□ 0.95
NPAS3-209ENST00000551008 SUPT6HQ7KZ85 1726 aaKnown RBP20.91■□□□□ 0.94
NPAS3-209ENST00000551008 CCNB3Q8WWL7 1395 aa20.91■□□□□ 0.94
NPAS3-209ENST00000551008 INO80Q9ULG1 1556 aaPredicted RBP20.91■□□□□ 0.94
NPAS3-209ENST00000551008 KIAA1107Q9UPP5 1409 aa20.89■□□□□ 0.94
NPAS3-209ENST00000551008 AGLP35573 1532 aa20.88■□□□□ 0.93
NPAS3-209ENST00000551008 NCOA2Q15596 1464 aa20.88■□□□□ 0.93
NPAS3-209ENST00000551008 ZNF777Q9ULD5 760 aaPredicted RBP20.87■□□□□ 0.93
NPAS3-209ENST00000551008 LMTK3Q96Q04 1460 aa20.87■□□□□ 0.93
NPAS3-209ENST00000551008 HNRNPMP52272 730 aaKnown RBP eCLIP20.86■□□□□ 0.93
NPAS3-209ENST00000551008 MLECQ14165 292 aa20.86■□□□□ 0.93
NPAS3-209ENST00000551008 ATP7AQ04656 1500 aa20.86■□□□□ 0.93
NPAS3-209ENST00000551008 PLEKHH2Q8IVE3 1493 aa20.86■□□□□ 0.93
NPAS3-209ENST00000551008 MBD5Q9P267 1494 aa20.86■□□□□ 0.93
NPAS3-209ENST00000551008 ZNF644Q9H582 1327 aaPredicted RBP20.85■□□□□ 0.93
NPAS3-209ENST00000551008 CFDP1Q9UEE9 299 aaPredicted RBP20.85■□□□□ 0.93
NPAS3-209ENST00000551008 LRRC9Q6ZRR7 1453 aa20.85■□□□□ 0.93
NPAS3-209ENST00000551008 PLXNC1O60486 1568 aa20.84■□□□□ 0.93
NPAS3-209ENST00000551008 MAP3K1Q13233 1512 aa20.83■□□□□ 0.93
NPAS3-209ENST00000551008 C3P01024 1663 aa20.8■□□□□ 0.92
NPAS3-209ENST00000551008 CAMSAP2Q08AD1 1489 aa20.79■□□□□ 0.92
NPAS3-209ENST00000551008 ADGBQ8N7X0 1667 aa20.79■□□□□ 0.92
NPAS3-209ENST00000551008 SPAG9O60271 1321 aaKnown RBP20.78■□□□□ 0.92
NPAS3-209ENST00000551008 KANK4Q5T7N3 995 aaPredicted RBP20.77■□□□□ 0.92
NPAS3-209ENST00000551008 MYT1LQ9UL68 1186 aa20.77■□□□□ 0.92
NPAS3-209ENST00000551008 PREX1Q8TCU6 1659 aa20.75■□□□□ 0.91
NPAS3-209ENST00000551008 A2MP01023 1474 aa20.74■□□□□ 0.91
NPAS3-209ENST00000551008 ARHGEF5Q12774 1597 aa20.73■□□□□ 0.91
NPAS3-209ENST00000551008 CEBPAP49715 358 aaPredicted RBP20.72■□□□□ 0.91
NPAS3-209ENST00000551008 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
NPAS3-209ENST00000551008 MROH2AA6NES4 1674 aa20.72■□□□□ 0.91
NPAS3-209ENST00000551008 CCDC141Q6ZP82 1450 aa20.71■□□□□ 0.91
NPAS3-209ENST00000551008 SETD1BQ9UPS6 1966 aaKnown RBP20.7■□□□□ 0.9
NPAS3-209ENST00000551008 RTEL1-TNFRSF6BF6WH68 1400 aa20.7■□□□□ 0.9
NPAS3-209ENST00000551008 CLTCQ00610 1675 aaKnown RBP20.68■□□□□ 0.9
NPAS3-209ENST00000551008 HSPA2P54652 639 aa20.66■□□□□ 0.9
NPAS3-209ENST00000551008 MYOM3Q5VTT5 1437 aa20.66■□□□□ 0.9
NPAS3-209ENST00000551008 MAST1Q9Y2H9 1570 aa20.64■□□□□ 0.9
NPAS3-209ENST00000551008 CNTLNQ9NXG0 1405 aa20.63■□□□□ 0.89
NPAS3-209ENST00000551008 STRCQ7RTU9 1775 aa20.62■□□□□ 0.89
NPAS3-209ENST00000551008 MIA2Q96PC5 1412 aa20.61■□□□□ 0.89
NPAS3-209ENST00000551008 DHX29Q7Z478 1369 aaKnown RBP20.6■□□□□ 0.89
NPAS3-209ENST00000551008 CROCC2H7BZ55 1655 aa20.6■□□□□ 0.89
NPAS3-209ENST00000551008 PTPN23Q9H3S7 1636 aa20.58■□□□□ 0.89
NPAS3-209ENST00000551008 UHRF1BP1Q6BDS2 1440 aa20.56■□□□□ 0.88
NPAS3-209ENST00000551008 ZMYM3Q14202 1370 aa20.56■□□□□ 0.88
NPAS3-209ENST00000551008 RSPH4AQ5TD94 716 aa20.55■□□□□ 0.88
NPAS3-209ENST00000551008 NPATQ14207 1427 aa20.54■□□□□ 0.88
NPAS3-209ENST00000551008 RNF17Q9BXT8 1623 aaKnown RBP20.54■□□□□ 0.88
NPAS3-209ENST00000551008 MYO3AQ8NEV4 1616 aa20.53■□□□□ 0.88
NPAS3-209ENST00000551008 GGT6Q6P531 493 aa20.53■□□□□ 0.88
NPAS3-209ENST00000551008 TCOF1Q13428 1488 aaKnown RBP20.53■□□□□ 0.88
NPAS3-209ENST00000551008 ZNF142P52746 1687 aaPredicted RBP20.53■□□□□ 0.88
NPAS3-209ENST00000551008 MROH1Q8NDA8 1641 aa20.53■□□□□ 0.88
NPAS3-209ENST00000551008 PTPRKQ15262 1439 aa20.53■□□□□ 0.88
NPAS3-209ENST00000551008 DNMT1P26358 1616 aaKnown RBP20.52■□□□□ 0.88
NPAS3-209ENST00000551008 FGD6Q6ZV73 1430 aa20.52■□□□□ 0.87
NPAS3-209ENST00000551008 ESF1Q9H501 851 aaKnown RBP20.51■□□□□ 0.87
NPAS3-209ENST00000551008 ABCC5O15440 1437 aa20.51■□□□□ 0.87
NPAS3-209ENST00000551008 EIF2AK4Q9P2K8 1649 aaKnown RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms