RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TRIM52Q96A61 297 aa26.5■■□□□ 1.83
PRPF40B-208ENST00000548436 KIF14Q15058 1648 aa26.49■■□□□ 1.83
PRPF40B-208ENST00000548436 ROCK1Q13464 1354 aa26.49■■□□□ 1.83
PRPF40B-208ENST00000548436 KDM5BQ9UGL1 1544 aa26.49■■□□□ 1.83
PRPF40B-208ENST00000548436 ITSN2Q9NZM3 1697 aa26.48■■□□□ 1.83
PRPF40B-208ENST00000548436 HIRIP3Q9BW71 556 aaPredicted RBP26.46■■□□□ 1.83
PRPF40B-208ENST00000548436 ABCA8O94911 1581 aa26.45■■□□□ 1.83
PRPF40B-208ENST00000548436 DDX10Q13206 875 aaKnown RBP26.44■■□□□ 1.82
PRPF40B-208ENST00000548436 GPATCH8Q9UKJ3 1502 aaKnown RBP26.44■■□□□ 1.82
PRPF40B-208ENST00000548436 MPHOSPH9Q99550 1183 aa26.43■■□□□ 1.82
PRPF40B-208ENST00000548436 CAMSAP2Q08AD1 1489 aa26.42■■□□□ 1.82
PRPF40B-208ENST00000548436 CFDP1Q9UEE9 299 aaPredicted RBP26.39■■□□□ 1.82
PRPF40B-208ENST00000548436 ATP10BO94823 1461 aa26.36■■□□□ 1.81
PRPF40B-208ENST00000548436 ADGBQ8N7X0 1667 aa26.35■■□□□ 1.81
PRPF40B-208ENST00000548436 CHD1O14646 1710 aa26.35■■□□□ 1.81
PRPF40B-208ENST00000548436 CDC42BPAQ5VT25 1732 aa26.35■■□□□ 1.81
PRPF40B-208ENST00000548436 CROCC2H7BZ55 1655 aa26.34■■□□□ 1.81
PRPF40B-208ENST00000548436 FOXD1Q16676 465 aa26.33■■□□□ 1.81
PRPF40B-208ENST00000548436 KCNH8Q96L42 1107 aa26.32■■□□□ 1.8
PRPF40B-208ENST00000548436 PLEKHD1A6NEE1 506 aa26.3■■□□□ 1.8
PRPF40B-208ENST00000548436 ZNF777Q9ULD5 760 aaPredicted RBP26.3■■□□□ 1.8
PRPF40B-208ENST00000548436 ABCC10Q5T3U5 1492 aa26.29■■□□□ 1.8
PRPF40B-208ENST00000548436 NCOA1Q15788 1441 aa26.29■■□□□ 1.8
PRPF40B-208ENST00000548436 ANKRD30BQ9BXX2 1392 aa26.27■■□□□ 1.8
PRPF40B-208ENST00000548436 ADGRL2O95490 1459 aa26.26■■□□□ 1.8
PRPF40B-208ENST00000548436 PTPRGP23470 1445 aa26.25■■□□□ 1.79
PRPF40B-208ENST00000548436 L3MBTL2Q969R5 705 aa26.22■■□□□ 1.79
PRPF40B-208ENST00000548436 SLC4A1APQ9BWU0 796 aaKnown RBP26.22■■□□□ 1.79
PRPF40B-208ENST00000548436 PZPP20742 1482 aa26.22■■□□□ 1.79
PRPF40B-208ENST00000548436 RPRD2Q5VT52 1461 aaKnown RBP26.22■■□□□ 1.79
PRPF40B-208ENST00000548436 SHROOM2Q13796 1616 aa26.19■■□□□ 1.78
PRPF40B-208ENST00000548436 ANKRD30AQ9BXX3 1397 aa26.17■■□□□ 1.78
PRPF40B-208ENST00000548436 TEX14Q8IWB6 1497 aa26.15■■□□□ 1.78
PRPF40B-208ENST00000548436 HSPA5P11021 654 aaKnown RBP26.14■■□□□ 1.77
PRPF40B-208ENST00000548436 SHANK2Q9UPX8 1470 aa26.13■■□□□ 1.77
PRPF40B-208ENST00000548436 ANP32CO43423 234 aa26.13■■□□□ 1.77
PRPF40B-208ENST00000548436 CDC42BPBQ9Y5S2 1711 aa26.11■■□□□ 1.77
PRPF40B-208ENST00000548436 C9orf84Q5VXU9 1444 aa26.11■■□□□ 1.77
PRPF40B-208ENST00000548436 ANKRD50Q9ULJ7 1429 aa26.1■■□□□ 1.77
PRPF40B-208ENST00000548436 CCER2I3L3R5 266 aa26.09■■□□□ 1.77
PRPF40B-208ENST00000548436 ERCC6L2Q5T890 1561 aa26.08■■□□□ 1.77
PRPF40B-208ENST00000548436 EIF4G2P78344 907 aaKnown RBP eCLIP26.08■■□□□ 1.77
PRPF40B-208ENST00000548436 NBPF8Q3BBV2 869 aa26.08■■□□□ 1.77
PRPF40B-208ENST00000548436 PREX2Q70Z35 1606 aa26.07■■□□□ 1.76
PRPF40B-208ENST00000548436 KIAA1107Q9UPP5 1409 aa26.07■■□□□ 1.76
PRPF40B-208ENST00000548436 ARHGEF5Q12774 1597 aa26.06■■□□□ 1.76
PRPF40B-208ENST00000548436 WASHC2AQ641Q2 1341 aa26.06■■□□□ 1.76
PRPF40B-208ENST00000548436 SAMD9LQ8IVG5 1584 aa26.05■■□□□ 1.76
PRPF40B-208ENST00000548436 MBD5Q9P267 1494 aa26.04■■□□□ 1.76
PRPF40B-208ENST00000548436 HNRNPMP52272 730 aaKnown RBP eCLIP26.04■■□□□ 1.76
PRPF40B-208ENST00000548436 TSPY4P0CV99 314 aa26.02■■□□□ 1.76
PRPF40B-208ENST00000548436 TSPY10P0CW01 314 aa26.02■■□□□ 1.76
PRPF40B-208ENST00000548436 PKD2Q13563 968 aa26.02■■□□□ 1.76
PRPF40B-208ENST00000548436 PELP1Q8IZL8 1130 aaKnown RBP26■■□□□ 1.75
PRPF40B-208ENST00000548436 TTC37Q6PGP7 1564 aa25.99■■□□□ 1.75
PRPF40B-208ENST00000548436 ABCC2Q92887 1545 aa25.99■■□□□ 1.75
PRPF40B-208ENST00000548436 NUP155O75694 1391 aa25.96■■□□□ 1.75
PRPF40B-208ENST00000548436 KIF15Q9NS87 1388 aa25.96■■□□□ 1.75
PRPF40B-208ENST00000548436 KDM5DQ9BY66 1539 aa25.96■■□□□ 1.75
PRPF40B-208ENST00000548436 CCDC141Q6ZP82 1450 aa25.96■■□□□ 1.75
PRPF40B-208ENST00000548436 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.96■■□□□ 1.75
PRPF40B-208ENST00000548436 C11orf95C9JLR9 678 aaPredicted RBP25.95■■□□□ 1.74
PRPF40B-208ENST00000548436 CLASP1Q7Z460 1538 aa25.93■■□□□ 1.74
PRPF40B-208ENST00000548436 SPATA31E1Q6ZUB1 1445 aa25.93■■□□□ 1.74
PRPF40B-208ENST00000548436 POLR1AO95602 1720 aaPredicted RBP25.91■■□□□ 1.74
PRPF40B-208ENST00000548436 SUPT16HQ9Y5B9 1047 aaKnown RBP25.91■■□□□ 1.74
PRPF40B-208ENST00000548436 SYCP2Q9BX26 1530 aa25.91■■□□□ 1.74
PRPF40B-208ENST00000548436 MYO5CQ9NQX4 1742 aa25.91■■□□□ 1.74
PRPF40B-208ENST00000548436 ARHGAP5Q13017 1502 aa25.9■■□□□ 1.74
PRPF40B-208ENST00000548436 CCDC7Q96M83 1385 aa25.9■■□□□ 1.74
PRPF40B-208ENST00000548436 OSCARQ8IYS5 282 aa25.89■■□□□ 1.74
PRPF40B-208ENST00000548436 CNTLNQ9NXG0 1405 aa25.89■■□□□ 1.73
PRPF40B-208ENST00000548436 RSPH4AQ5TD94 716 aa25.88■■□□□ 1.73
PRPF40B-208ENST00000548436 ZCCHC11Q5TAX3 1644 aaKnown RBP25.86■■□□□ 1.73
PRPF40B-208ENST00000548436 MAST1Q9Y2H9 1570 aa25.85■■□□□ 1.73
PRPF40B-208ENST00000548436 FAM135AQ9P2D6 1515 aa25.8■■□□□ 1.72
PRPF40B-208ENST00000548436 UHRF1BP1LA0JNW5 1464 aa25.8■■□□□ 1.72
PRPF40B-208ENST00000548436 KIF7Q2M1P5 1343 aa25.8■■□□□ 1.72
PRPF40B-208ENST00000548436 ZNF326Q5BKZ1 582 aaKnown RBP25.79■■□□□ 1.72
PRPF40B-208ENST00000548436 UHRF1BP1Q6BDS2 1440 aa25.78■■□□□ 1.72
PRPF40B-208ENST00000548436 PLEKHH2Q8IVE3 1493 aa25.77■■□□□ 1.72
PRPF40B-208ENST00000548436 ARHGEF12Q9NZN5 1544 aa25.76■■□□□ 1.71
PRPF40B-208ENST00000548436 PLXNC1O60486 1568 aa25.76■■□□□ 1.71
PRPF40B-208ENST00000548436 BCORL1Q5H9F3 1711 aa25.76■■□□□ 1.71
PRPF40B-208ENST00000548436 UNC13BO14795 1591 aa25.76■■□□□ 1.71
PRPF40B-208ENST00000548436 KDM5CP41229 1560 aa25.76■■□□□ 1.71
PRPF40B-208ENST00000548436 USP47Q96K76 1375 aa25.74■■□□□ 1.71
PRPF40B-208ENST00000548436 PLCH2O75038 1416 aa25.74■■□□□ 1.71
PRPF40B-208ENST00000548436 RALGAPBQ86X10 1494 aa25.72■■□□□ 1.71
PRPF40B-208ENST00000548436 PRKRIP1Q9H875 184 aaPredicted RBP25.7■■□□□ 1.71
PRPF40B-208ENST00000548436 CCDC184Q52MB2 194 aa25.68■■□□□ 1.7
PRPF40B-208ENST00000548436 IQGAP3Q86VI3 1631 aa25.67■■□□□ 1.7
PRPF40B-208ENST00000548436 ABCC1P33527 1531 aa25.66■■□□□ 1.7
PRPF40B-208ENST00000548436 DUOX2Q9NRD8 1548 aa25.66■■□□□ 1.7
PRPF40B-208ENST00000548436 KDM2AQ9Y2K7 1162 aa25.65■■□□□ 1.7
PRPF40B-208ENST00000548436 EFCAB2Q5VUJ9 269 aa25.65■■□□□ 1.7
PRPF40B-208ENST00000548436 DCAF11Q8TEB1 546 aa25.64■■□□□ 1.7
PRPF40B-208ENST00000548436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.64■■□□□ 1.69
PRPF40B-208ENST00000548436 HNRNPUQ00839 825 aaKnown RBP eCLIP25.62■■□□□ 1.69
PRPF40B-208ENST00000548436 PLA2R1Q13018 1463 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms