RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ATP1B4Q9UN42 357 aaPredicted RBP28.16■■■□□ 2.1
VPS29-204ENST00000548259 CERKQ8TCT0 537 aa28.14■■■□□ 2.1
VPS29-204ENST00000548259 HECW1Q76N89 1606 aa28.13■■■□□ 2.09
VPS29-204ENST00000548259 CDK13Q14004 1512 aaKnown RBP28.12■■■□□ 2.09
VPS29-204ENST00000548259 ATP10AO60312 1499 aa28.11■■■□□ 2.09
VPS29-204ENST00000548259 FMN1Q68DA7 1419 aa28.09■■■□□ 2.09
VPS29-204ENST00000548259 C9orf84Q5VXU9 1444 aa28.09■■■□□ 2.09
VPS29-204ENST00000548259 UBTFP17480 764 aaKnown RBP28.06■■■□□ 2.08
VPS29-204ENST00000548259 DMRT2Q9Y5R5 561 aa28.06■■■□□ 2.08
VPS29-204ENST00000548259 FER1L4A9Z1Z3 1794 aa28.05■■■□□ 2.08
VPS29-204ENST00000548259 MYT1LQ9UL68 1186 aa28.05■■■□□ 2.08
VPS29-204ENST00000548259 ARHGEF12Q9NZN5 1544 aa28.02■■■□□ 2.08
VPS29-204ENST00000548259 ZNF518AQ6AHZ1 1483 aa28.02■■■□□ 2.08
VPS29-204ENST00000548259 CLIP1P30622 1438 aa28■■■□□ 2.07
VPS29-204ENST00000548259 SIGLEC1Q9BZZ2 1709 aa27.99■■■□□ 2.07
VPS29-204ENST00000548259 MYO5CQ9NQX4 1742 aa27.96■■■□□ 2.07
VPS29-204ENST00000548259 CEBPAP49715 358 aaPredicted RBP27.96■■■□□ 2.07
VPS29-204ENST00000548259 UHRF1BP1Q6BDS2 1440 aa27.95■■■□□ 2.07
VPS29-204ENST00000548259 ESF1Q9H501 851 aaKnown RBP27.95■■■□□ 2.06
VPS29-204ENST00000548259 ARHGAP5Q13017 1502 aa27.95■■■□□ 2.06
VPS29-204ENST00000548259 TROQ12816 1431 aaPredicted RBP27.94■■■□□ 2.06
VPS29-204ENST00000548259 KIF14Q15058 1648 aa27.94■■■□□ 2.06
VPS29-204ENST00000548259 AFAP1Q8N556 730 aa27.94■■■□□ 2.06
VPS29-204ENST00000548259 EHMT2Q96KQ7 1210 aa27.94■■■□□ 2.06
VPS29-204ENST00000548259 PREX1Q8TCU6 1659 aa27.93■■■□□ 2.06
VPS29-204ENST00000548259 ARHGAP35Q9NRY4 1499 aa27.89■■■□□ 2.05
VPS29-204ENST00000548259 KDM5CP41229 1560 aa27.86■■■□□ 2.05
VPS29-204ENST00000548259 MLH3Q9UHC1 1453 aa27.83■■■□□ 2.04
VPS29-204ENST00000548259 REREQ9P2R6 1566 aa27.82■■■□□ 2.04
VPS29-204ENST00000548259 DISP3Q9P2K9 1392 aa27.79■■■□□ 2.04
VPS29-204ENST00000548259 SETD1BQ9UPS6 1966 aaKnown RBP27.79■■■□□ 2.04
VPS29-204ENST00000548259 DIP2CQ9Y2E4 1556 aa27.78■■■□□ 2.04
VPS29-204ENST00000548259 PTPRTO14522 1441 aa27.78■■■□□ 2.04
VPS29-204ENST00000548259 AGLP35573 1532 aa27.76■■■□□ 2.03
VPS29-204ENST00000548259 CNTLNQ9NXG0 1405 aa27.75■■■□□ 2.03
VPS29-204ENST00000548259 TRAPPC8Q9Y2L5 1435 aa27.75■■■□□ 2.03
VPS29-204ENST00000548259 CCDC18Q5T9S5 1454 aa27.74■■■□□ 2.03
VPS29-204ENST00000548259 STRCQ7RTU9 1775 aa27.71■■■□□ 2.03
VPS29-204ENST00000548259 ABCA6Q8N139 1617 aa27.7■■■□□ 2.02
VPS29-204ENST00000548259 ABCC1P33527 1531 aa27.69■■■□□ 2.02
VPS29-204ENST00000548259 CASKIN1Q8WXD9 1431 aa27.68■■■□□ 2.02
VPS29-204ENST00000548259 PREX2Q70Z35 1606 aa27.67■■■□□ 2.02
VPS29-204ENST00000548259 CDC42BPBQ9Y5S2 1711 aa27.66■■■□□ 2.02
VPS29-204ENST00000548259 C3P01024 1663 aa27.65■■■□□ 2.02
VPS29-204ENST00000548259 SOCS7O14512 581 aa27.63■■■□□ 2.01
VPS29-204ENST00000548259 ZNF777Q9ULD5 760 aaPredicted RBP27.63■■■□□ 2.01
VPS29-204ENST00000548259 NPATQ14207 1427 aa27.61■■■□□ 2.01
VPS29-204ENST00000548259 NCOA1Q15788 1441 aa27.61■■■□□ 2.01
VPS29-204ENST00000548259 IQSEC2Q5JU85 1478 aa27.61■■■□□ 2.01
VPS29-204ENST00000548259 SPAG9O60271 1321 aaKnown RBP27.61■■■□□ 2.01
VPS29-204ENST00000548259 ITSN2Q9NZM3 1697 aa27.59■■■□□ 2.01
VPS29-204ENST00000548259 ILDR2Q71H61 639 aa27.59■■■□□ 2.01
VPS29-204ENST00000548259 CHIC1Q5VXU3 224 aa27.58■■■□□ 2.01
VPS29-204ENST00000548259 LRRIQ1Q96JM4 1722 aa27.57■■■□□ 2
VPS29-204ENST00000548259 ZMYM3Q14202 1370 aa27.56■■■□□ 2
VPS29-204ENST00000548259 KIDINS220Q9ULH0 1771 aa27.55■■■□□ 2
VPS29-204ENST00000548259 FYCO1Q9BQS8 1478 aa27.54■■■□□ 2
VPS29-204ENST00000548259 LTBP4Q8N2S1 1624 aa27.53■■■□□ 2
VPS29-204ENST00000548259 SAMD9LQ8IVG5 1584 aa27.53■■■□□ 2
VPS29-204ENST00000548259 PLEKHH2Q8IVE3 1493 aa27.51■■■□□ 2
VPS29-204ENST00000548259 HNRNPMP52272 730 aaKnown RBP eCLIP27.51■■□□□ 1.99
VPS29-204ENST00000548259 CFDP1Q9UEE9 299 aaPredicted RBP27.51■■□□□ 1.99
VPS29-204ENST00000548259 CAMSAP1Q5T5Y3 1602 aa27.5■■□□□ 1.99
VPS29-204ENST00000548259 MROH2AA6NES4 1674 aa27.49■■□□□ 1.99
VPS29-204ENST00000548259 SPATA31D1Q6ZQQ2 1576 aa27.49■■□□□ 1.99
VPS29-204ENST00000548259 PKD2Q13563 968 aa27.49■■□□□ 1.99
VPS29-204ENST00000548259 CDC42BPAQ5VT25 1732 aa27.49■■□□□ 1.99
VPS29-204ENST00000548259 KIAA1107Q9UPP5 1409 aa27.49■■□□□ 1.99
VPS29-204ENST00000548259 SYCP2Q9BX26 1530 aa27.48■■□□□ 1.99
VPS29-204ENST00000548259 GPATCH8Q9UKJ3 1502 aaKnown RBP27.48■■□□□ 1.99
VPS29-204ENST00000548259 PPP6R1Q9UPN7 881 aa27.47■■□□□ 1.99
VPS29-204ENST00000548259 NCKAP5LQ9HCH0 1330 aa27.46■■□□□ 1.99
VPS29-204ENST00000548259 CCNB3Q8WWL7 1395 aa27.46■■□□□ 1.99
VPS29-204ENST00000548259 GGT6Q6P531 493 aa27.45■■□□□ 1.98
VPS29-204ENST00000548259 A2MP01023 1474 aa27.44■■□□□ 1.98
VPS29-204ENST00000548259 UBAP1LF5GYI3 381 aa27.44■■□□□ 1.98
VPS29-204ENST00000548259 ATP7AQ04656 1500 aa27.44■■□□□ 1.98
VPS29-204ENST00000548259 PLA2R1Q13018 1463 aa27.42■■□□□ 1.98
VPS29-204ENST00000548259 ZNF335Q9H4Z2 1342 aaPredicted RBP27.41■■□□□ 1.98
VPS29-204ENST00000548259 MTUS2Q5JR59 1369 aa27.39■■□□□ 1.98
VPS29-204ENST00000548259 SUPT6HQ7KZ85 1726 aaKnown RBP27.38■■□□□ 1.97
VPS29-204ENST00000548259 PTPRKQ15262 1439 aa27.37■■□□□ 1.97
VPS29-204ENST00000548259 PLXNC1O60486 1568 aa27.36■■□□□ 1.97
VPS29-204ENST00000548259 CLTCQ00610 1675 aaKnown RBP27.34■■□□□ 1.97
VPS29-204ENST00000548259 INO80Q9ULG1 1556 aaPredicted RBP27.34■■□□□ 1.97
VPS29-204ENST00000548259 CEP170BQ9Y4F5 1589 aaPredicted RBP27.34■■□□□ 1.97
VPS29-204ENST00000548259 MYO3AQ8NEV4 1616 aa27.33■■□□□ 1.97
VPS29-204ENST00000548259 TCOF1Q13428 1488 aaKnown RBP27.32■■□□□ 1.96
VPS29-204ENST00000548259 ZNF142P52746 1687 aaPredicted RBP27.31■■□□□ 1.96
VPS29-204ENST00000548259 A2ML1A8K2U0 1454 aa27.26■■□□□ 1.95
VPS29-204ENST00000548259 RTEL1-TNFRSF6BF6WH68 1400 aa27.26■■□□□ 1.95
VPS29-204ENST00000548259 ADGBQ8N7X0 1667 aa27.24■■□□□ 1.95
VPS29-204ENST00000548259 DHX29Q7Z478 1369 aaKnown RBP27.23■■□□□ 1.95
VPS29-204ENST00000548259 ZNF644Q9H582 1327 aaPredicted RBP27.22■■□□□ 1.95
VPS29-204ENST00000548259 SCAF1Q9H7N4 1312 aaKnown RBP27.22■■□□□ 1.95
VPS29-204ENST00000548259 TOM1O60784 492 aa27.22■■□□□ 1.95
VPS29-204ENST00000548259 RSPH4AQ5TD94 716 aa27.2■■□□□ 1.94
VPS29-204ENST00000548259 TNRQ92752 1358 aa27.2■■□□□ 1.94
VPS29-204ENST00000548259 KIF3BO15066 747 aa27.19■■□□□ 1.94
VPS29-204ENST00000548259 MBD5Q9P267 1494 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms