RNA–Protein interactions for RNA: ENST00000545284.1

COPA-207, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-207ENST00000545284 NUP153P49790 1475 aaKnown RBP12.5□□□□□ -0.41
COPA-207ENST00000545284 RAPGEF6Q8TEU7 1601 aa12.49□□□□□ -0.41
COPA-207ENST00000545284 PREX1Q8TCU6 1659 aa12.48□□□□□ -0.41
COPA-207ENST00000545284 C9orf84Q5VXU9 1444 aa12.48□□□□□ -0.41
COPA-207ENST00000545284 SCAPERQ9BY12 1400 aa12.47□□□□□ -0.41
COPA-207ENST00000545284 CEBPAP49715 358 aaPredicted RBP12.47□□□□□ -0.41
COPA-207ENST00000545284 PLCH2O75038 1416 aa12.46□□□□□ -0.41
COPA-207ENST00000545284 SAMD9Q5K651 1589 aa12.46□□□□□ -0.42
COPA-207ENST00000545284 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.46□□□□□ -0.42
COPA-207ENST00000545284 HECW1Q76N89 1606 aa12.45□□□□□ -0.42
COPA-207ENST00000545284 FER1L4A9Z1Z3 1794 aa12.44□□□□□ -0.42
COPA-207ENST00000545284 SETD1BQ9UPS6 1966 aaKnown RBP12.44□□□□□ -0.42
COPA-207ENST00000545284 EFCAB2Q5VUJ9 269 aa12.44□□□□□ -0.42
COPA-207ENST00000545284 LTBP4Q8N2S1 1624 aa12.44□□□□□ -0.42
COPA-207ENST00000545284 STRCQ7RTU9 1775 aa12.43□□□□□ -0.42
COPA-207ENST00000545284 TRAPPC8Q9Y2L5 1435 aa12.42□□□□□ -0.42
COPA-207ENST00000545284 SIGLEC1Q9BZZ2 1709 aa12.41□□□□□ -0.42
COPA-207ENST00000545284 ESF1Q9H501 851 aaKnown RBP12.41□□□□□ -0.42
COPA-207ENST00000545284 ZNF518AQ6AHZ1 1483 aa12.4□□□□□ -0.42
COPA-207ENST00000545284 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
COPA-207ENST00000545284 CDK11AQ9UQ88 783 aaPredicted RBP12.39□□□□□ -0.43
COPA-207ENST00000545284 NCOA1Q15788 1441 aa12.38□□□□□ -0.43
COPA-207ENST00000545284 CNTLNQ9NXG0 1405 aa12.37□□□□□ -0.43
COPA-207ENST00000545284 UBAP1LF5GYI3 381 aa12.37□□□□□ -0.43
COPA-207ENST00000545284 REREQ9P2R6 1566 aa12.36□□□□□ -0.43
COPA-207ENST00000545284 PKD2Q13563 968 aa12.36□□□□□ -0.43
COPA-207ENST00000545284 AFAP1Q8N556 730 aa12.35□□□□□ -0.43
COPA-207ENST00000545284 AGLP35573 1532 aa12.35□□□□□ -0.43
COPA-207ENST00000545284 NPATQ14207 1427 aa12.35□□□□□ -0.43
COPA-207ENST00000545284 MLH3Q9UHC1 1453 aa12.34□□□□□ -0.43
COPA-207ENST00000545284 KDM5CP41229 1560 aa12.33□□□□□ -0.44
COPA-207ENST00000545284 MYT1LQ9UL68 1186 aa12.32□□□□□ -0.44
COPA-207ENST00000545284 PLA2R1Q13018 1463 aa12.3□□□□□ -0.44
COPA-207ENST00000545284 ZNF335Q9H4Z2 1342 aaPredicted RBP12.3□□□□□ -0.44
COPA-207ENST00000545284 TOM1O60784 492 aa12.29□□□□□ -0.44
COPA-207ENST00000545284 EEA1Q15075 1411 aa12.28□□□□□ -0.44
COPA-207ENST00000545284 DIP2CQ9Y2E4 1556 aa12.27□□□□□ -0.44
COPA-207ENST00000545284 CAMSAP1Q5T5Y3 1602 aa12.27□□□□□ -0.44
COPA-207ENST00000545284 RANGAP1P46060 587 aaPredicted RBP12.27□□□□□ -0.45
COPA-207ENST00000545284 NCKAP5LQ9HCH0 1330 aa12.27□□□□□ -0.45
COPA-207ENST00000545284 ZMYM3Q14202 1370 aa12.27□□□□□ -0.45
COPA-207ENST00000545284 FMN1Q68DA7 1419 aa12.27□□□□□ -0.45
COPA-207ENST00000545284 C3P01024 1663 aa12.26□□□□□ -0.45
COPA-207ENST00000545284 PPP6R1Q9UPN7 881 aa12.26□□□□□ -0.45
COPA-207ENST00000545284 HSPA1LP34931 641 aa12.25□□□□□ -0.45
COPA-207ENST00000545284 CLIP1P30622 1438 aa12.25□□□□□ -0.45
COPA-207ENST00000545284 TCOF1Q13428 1488 aaKnown RBP12.25□□□□□ -0.45
COPA-207ENST00000545284 CDK13Q14004 1512 aaKnown RBP12.25□□□□□ -0.45
COPA-207ENST00000545284 TROQ12816 1431 aaPredicted RBP12.24□□□□□ -0.45
COPA-207ENST00000545284 ARHGAP5Q13017 1502 aa12.24□□□□□ -0.45
COPA-207ENST00000545284 MYO5CQ9NQX4 1742 aa12.23□□□□□ -0.45
COPA-207ENST00000545284 PHF23Q9BUL5 403 aaPredicted RBP12.22□□□□□ -0.45
COPA-207ENST00000545284 MED1Q15648 1581 aaPredicted RBP12.22□□□□□ -0.45
COPA-207ENST00000545284 KIF14Q15058 1648 aa12.2□□□□□ -0.46
COPA-207ENST00000545284 ATP1B4Q9UN42 357 aaPredicted RBP12.2□□□□□ -0.46
COPA-207ENST00000545284 CPS1P31327 1500 aa12.2□□□□□ -0.46
COPA-207ENST00000545284 PTPRKQ15262 1439 aa12.2□□□□□ -0.46
COPA-207ENST00000545284 ABCA6Q8N139 1617 aa12.19□□□□□ -0.46
COPA-207ENST00000545284 SCAF1Q9H7N4 1312 aaKnown RBP12.19□□□□□ -0.46
COPA-207ENST00000545284 PIP4K2BP78356 416 aa12.19□□□□□ -0.46
COPA-207ENST00000545284 MROH2AA6NES4 1674 aa12.19□□□□□ -0.46
COPA-207ENST00000545284 ABCC1P33527 1531 aa12.16□□□□□ -0.46
COPA-207ENST00000545284 SPAG9O60271 1321 aaKnown RBP12.15□□□□□ -0.46
COPA-207ENST00000545284 CEP170BQ9Y4F5 1589 aaPredicted RBP12.15□□□□□ -0.46
COPA-207ENST00000545284 SHANK2Q9UPX8 1470 aa12.14□□□□□ -0.47
COPA-207ENST00000545284 ZNF142P52746 1687 aaPredicted RBP12.14□□□□□ -0.47
COPA-207ENST00000545284 A2ML1A8K2U0 1454 aa12.14□□□□□ -0.47
COPA-207ENST00000545284 KIDINS220Q9ULH0 1771 aa12.13□□□□□ -0.47
COPA-207ENST00000545284 ANKLE2Q86XL3 938 aa12.12□□□□□ -0.47
COPA-207ENST00000545284 KIAA1107Q9UPP5 1409 aa12.11□□□□□ -0.47
COPA-207ENST00000545284 GGT6Q6P531 493 aa12.11□□□□□ -0.47
COPA-207ENST00000545284 THEMISQ8N1K5 641 aaPredicted RBP12.11□□□□□ -0.47
COPA-207ENST00000545284 MYO3AQ8NEV4 1616 aa12.1□□□□□ -0.47
COPA-207ENST00000545284 SAMD9LQ8IVG5 1584 aa12.09□□□□□ -0.47
COPA-207ENST00000545284 A2MP01023 1474 aa12.09□□□□□ -0.47
COPA-207ENST00000545284 CDC42BPBQ9Y5S2 1711 aa12.09□□□□□ -0.47
COPA-207ENST00000545284 PREX2Q70Z35 1606 aa12.09□□□□□ -0.47
COPA-207ENST00000545284 UBTFP17480 764 aaKnown RBP12.09□□□□□ -0.47
COPA-207ENST00000545284 ARHGAP35Q9NRY4 1499 aa12.08□□□□□ -0.47
COPA-207ENST00000545284 ITSN2Q9NZM3 1697 aa12.08□□□□□ -0.48
COPA-207ENST00000545284 CCDC18Q5T9S5 1454 aa12.08□□□□□ -0.48
COPA-207ENST00000545284 PLEKHH2Q8IVE3 1493 aa12.08□□□□□ -0.48
COPA-207ENST00000545284 PLXNC1O60486 1568 aa12.07□□□□□ -0.48
COPA-207ENST00000545284 DNMT1P26358 1616 aaKnown RBP12.07□□□□□ -0.48
COPA-207ENST00000545284 MED14O60244 1454 aa12.07□□□□□ -0.48
COPA-207ENST00000545284 HNRNPMP52272 730 aaKnown RBP eCLIP12.06□□□□□ -0.48
COPA-207ENST00000545284 RGS17Q9UGC6 210 aaPredicted RBP12.06□□□□□ -0.48
COPA-207ENST00000545284 ZNF777Q9ULD5 760 aaPredicted RBP12.06□□□□□ -0.48
COPA-207ENST00000545284 TNRQ92752 1358 aa12.05□□□□□ -0.48
COPA-207ENST00000545284 ATP7AQ04656 1500 aa12.05□□□□□ -0.48
COPA-207ENST00000545284 CASKIN1Q8WXD9 1431 aa12.04□□□□□ -0.48
COPA-207ENST00000545284 CLTCQ00610 1675 aaKnown RBP12.03□□□□□ -0.48
COPA-207ENST00000545284 FAM135AQ9P2D6 1515 aa12.03□□□□□ -0.48
COPA-207ENST00000545284 GPATCH8Q9UKJ3 1502 aaKnown RBP12.03□□□□□ -0.48
COPA-207ENST00000545284 CFDP1Q9UEE9 299 aaPredicted RBP12.03□□□□□ -0.48
COPA-207ENST00000545284 NEURL4Q96JN8 1562 aa12.03□□□□□ -0.48
COPA-207ENST00000545284 RTEL1-TNFRSF6BF6WH68 1400 aa12.03□□□□□ -0.48
COPA-207ENST00000545284 NPHP4O75161 1426 aaPredicted RBP12.03□□□□□ -0.48
COPA-207ENST00000545284 NLRP1Q9C000 1473 aa12.02□□□□□ -0.48
COPA-207ENST00000545284 VWDEQ8N2E2 1590 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms