RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 CDC42BPBQ9Y5S2 1711 aa18.23■□□□□ 0.51
YBX3-216ENST00000544622 ARHGAP5Q13017 1502 aa18.23■□□□□ 0.51
YBX3-216ENST00000544622 POGZQ7Z3K3 1410 aa18.23■□□□□ 0.51
YBX3-216ENST00000544622 ZMYM4Q5VZL5 1548 aa18.22■□□□□ 0.51
YBX3-216ENST00000544622 GPATCH8Q9UKJ3 1502 aaKnown RBP18.22■□□□□ 0.51
YBX3-216ENST00000544622 MTUS2Q5JR59 1369 aa18.21■□□□□ 0.51
YBX3-216ENST00000544622 PREX2Q70Z35 1606 aa18.21■□□□□ 0.51
YBX3-216ENST00000544622 MAGI2Q86UL8 1455 aa18.2■□□□□ 0.5
YBX3-216ENST00000544622 CDC42BPAQ5VT25 1732 aa18.19■□□□□ 0.5
YBX3-216ENST00000544622 ARHGEF12Q9NZN5 1544 aa18.18■□□□□ 0.5
YBX3-216ENST00000544622 AFAP1Q8N556 730 aa18.17■□□□□ 0.5
YBX3-216ENST00000544622 EHBP1L1Q8N3D4 1523 aa18.17■□□□□ 0.5
YBX3-216ENST00000544622 TIAM1Q13009 1591 aa18.16■□□□□ 0.5
YBX3-216ENST00000544622 YEATS2Q9ULM3 1422 aa18.15■□□□□ 0.5
YBX3-216ENST00000544622 ZNF518AQ6AHZ1 1483 aa18.15■□□□□ 0.5
YBX3-216ENST00000544622 MAP3K1Q13233 1512 aa18.15■□□□□ 0.5
YBX3-216ENST00000544622 ARHGEF40Q8TER5 1519 aa18.15■□□□□ 0.5
YBX3-216ENST00000544622 ABCC1P33527 1531 aa18.14■□□□□ 0.49
YBX3-216ENST00000544622 KDM5CP41229 1560 aa18.14■□□□□ 0.49
YBX3-216ENST00000544622 CCNB3Q8WWL7 1395 aa18.14■□□□□ 0.49
YBX3-216ENST00000544622 TRAPPC8Q9Y2L5 1435 aa18.13■□□□□ 0.49
YBX3-216ENST00000544622 ZFYVE16Q7Z3T8 1539 aa18.13■□□□□ 0.49
YBX3-216ENST00000544622 CFDP1Q9UEE9 299 aaPredicted RBP18.12■□□□□ 0.49
YBX3-216ENST00000544622 KIAA1107Q9UPP5 1409 aa18.11■□□□□ 0.49
YBX3-216ENST00000544622 LRRC9Q6ZRR7 1453 aa18.11■□□□□ 0.49
YBX3-216ENST00000544622 SAMD9LQ8IVG5 1584 aa18.11■□□□□ 0.49
YBX3-216ENST00000544622 MLH3Q9UHC1 1453 aa18.1■□□□□ 0.49
YBX3-216ENST00000544622 KANK4Q5T7N3 995 aaPredicted RBP18.1■□□□□ 0.49
YBX3-216ENST00000544622 NCOA2Q15596 1464 aa18.09■□□□□ 0.49
YBX3-216ENST00000544622 ATP10AO60312 1499 aa18.08■□□□□ 0.49
YBX3-216ENST00000544622 ZNF777Q9ULD5 760 aaPredicted RBP18.08■□□□□ 0.48
YBX3-216ENST00000544622 ITSN2Q9NZM3 1697 aa18.08■□□□□ 0.48
YBX3-216ENST00000544622 SIGLEC1Q9BZZ2 1709 aa18.07■□□□□ 0.48
YBX3-216ENST00000544622 ADAMTSL3P82987 1691 aa18.07■□□□□ 0.48
YBX3-216ENST00000544622 HNRNPMP52272 730 aaKnown RBP eCLIP18.06■□□□□ 0.484e-7■■■■■ 27.2
YBX3-216ENST00000544622 PLEKHH2Q8IVE3 1493 aa18.06■□□□□ 0.48
YBX3-216ENST00000544622 ZNF644Q9H582 1327 aaPredicted RBP18.05■□□□□ 0.48
YBX3-216ENST00000544622 BCORL1Q5H9F3 1711 aa18.05■□□□□ 0.48
YBX3-216ENST00000544622 SUPT6HQ7KZ85 1726 aaKnown RBP18.05■□□□□ 0.48
YBX3-216ENST00000544622 HECW2Q9P2P5 1572 aa18.04■□□□□ 0.48
YBX3-216ENST00000544622 ARID4BQ4LE39 1312 aaPredicted RBP18.04■□□□□ 0.48
YBX3-216ENST00000544622 SYCP2Q9BX26 1530 aa18.04■□□□□ 0.48
YBX3-216ENST00000544622 MBD5Q9P267 1494 aa18.04■□□□□ 0.48
YBX3-216ENST00000544622 C9orf84Q5VXU9 1444 aa18.04■□□□□ 0.48
YBX3-216ENST00000544622 REREQ9P2R6 1566 aa18.01■□□□□ 0.47
YBX3-216ENST00000544622 DIP2CQ9Y2E4 1556 aa18.01■□□□□ 0.47
YBX3-216ENST00000544622 KIDINS220Q9ULH0 1771 aa18■□□□□ 0.47
YBX3-216ENST00000544622 ABCA6Q8N139 1617 aa17.99■□□□□ 0.47
YBX3-216ENST00000544622 PTPRMP28827 1452 aa17.99■□□□□ 0.47
YBX3-216ENST00000544622 SPAG9O60271 1321 aaKnown RBP17.98■□□□□ 0.47
YBX3-216ENST00000544622 MADDQ8WXG6 1647 aa17.97■□□□□ 0.47
YBX3-216ENST00000544622 APLP2Q06481 763 aa17.96■□□□□ 0.47
YBX3-216ENST00000544622 RSPH4AQ5TD94 716 aa17.96■□□□□ 0.47
YBX3-216ENST00000544622 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
YBX3-216ENST00000544622 AGLP35573 1532 aa17.96■□□□□ 0.47
YBX3-216ENST00000544622 MIA2Q96PC5 1412 aa17.95■□□□□ 0.46
YBX3-216ENST00000544622 INO80Q9ULG1 1556 aaPredicted RBP17.95■□□□□ 0.46
YBX3-216ENST00000544622 CAMSAP2Q08AD1 1489 aa17.95■□□□□ 0.46
YBX3-216ENST00000544622 RTEL1-TNFRSF6BF6WH68 1400 aa17.94■□□□□ 0.46
YBX3-216ENST00000544622 ATP7AQ04656 1500 aa17.93■□□□□ 0.46
YBX3-216ENST00000544622 MYOM3Q5VTT5 1437 aa17.93■□□□□ 0.46
YBX3-216ENST00000544622 MLECQ14165 292 aa17.93■□□□□ 0.46
YBX3-216ENST00000544622 CCDC141Q6ZP82 1450 aa17.9■□□□□ 0.46
YBX3-216ENST00000544622 ARHGEF5Q12774 1597 aa17.89■□□□□ 0.45
YBX3-216ENST00000544622 PLXNC1O60486 1568 aa17.88■□□□□ 0.45
YBX3-216ENST00000544622 RIMS1Q86UR5 1692 aaKnown RBP17.87■□□□□ 0.45
YBX3-216ENST00000544622 A2MP01023 1474 aa17.87■□□□□ 0.45
YBX3-216ENST00000544622 DHX29Q7Z478 1369 aaKnown RBP17.85■□□□□ 0.45
YBX3-216ENST00000544622 FER1L4A9Z1Z3 1794 aa17.84■□□□□ 0.45
YBX3-216ENST00000544622 TSPY4P0CV99 314 aa17.84■□□□□ 0.45
YBX3-216ENST00000544622 TSPY10P0CW01 314 aa17.84■□□□□ 0.45
YBX3-216ENST00000544622 ADGBQ8N7X0 1667 aa17.82■□□□□ 0.44
YBX3-216ENST00000544622 TCOF1Q13428 1488 aaKnown RBP17.82■□□□□ 0.44
YBX3-216ENST00000544622 FGD6Q6ZV73 1430 aa17.81■□□□□ 0.44
YBX3-216ENST00000544622 MAST1Q9Y2H9 1570 aa17.8■□□□□ 0.44
YBX3-216ENST00000544622 CEBPAP49715 358 aaPredicted RBP17.79■□□□□ 0.44
YBX3-216ENST00000544622 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
YBX3-216ENST00000544622 PTPN23Q9H3S7 1636 aa17.79■□□□□ 0.44
YBX3-216ENST00000544622 LMTK3Q96Q04 1460 aa17.78■□□□□ 0.44
YBX3-216ENST00000544622 ABCC5O15440 1437 aa17.78■□□□□ 0.44
YBX3-216ENST00000544622 CNTLNQ9NXG0 1405 aa17.78■□□□□ 0.44
YBX3-216ENST00000544622 GGT6Q6P531 493 aa17.75■□□□□ 0.43
YBX3-216ENST00000544622 ESF1Q9H501 851 aaKnown RBP17.74■□□□□ 0.43
YBX3-216ENST00000544622 ZMYM3Q14202 1370 aa17.74■□□□□ 0.43
YBX3-216ENST00000544622 SHANK2Q9UPX8 1470 aa17.74■□□□□ 0.43
YBX3-216ENST00000544622 DAPK1P53355 1430 aa17.73■□□□□ 0.43
YBX3-216ENST00000544622 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
YBX3-216ENST00000544622 C3P01024 1663 aa17.72■□□□□ 0.43
YBX3-216ENST00000544622 KIF3BO15066 747 aa17.72■□□□□ 0.43
YBX3-216ENST00000544622 DNMT1P26358 1616 aaKnown RBP17.72■□□□□ 0.43
YBX3-216ENST00000544622 MROH2AA6NES4 1674 aa17.71■□□□□ 0.42
YBX3-216ENST00000544622 CROCC2H7BZ55 1655 aa17.69■□□□□ 0.42
YBX3-216ENST00000544622 SETD1BQ9UPS6 1966 aaKnown RBP17.68■□□□□ 0.42
YBX3-216ENST00000544622 NPATQ14207 1427 aa17.67■□□□□ 0.42
YBX3-216ENST00000544622 CLTCQ00610 1675 aaKnown RBP17.67■□□□□ 0.42
YBX3-216ENST00000544622 DUOX2Q9NRD8 1548 aa17.67■□□□□ 0.42
YBX3-216ENST00000544622 NCOA1Q15788 1441 aa17.66■□□□□ 0.42
YBX3-216ENST00000544622 FAM135AQ9P2D6 1515 aa17.66■□□□□ 0.42
YBX3-216ENST00000544622 KIF15Q9NS87 1388 aa17.66■□□□□ 0.42
YBX3-216ENST00000544622 PREX1Q8TCU6 1659 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms