RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TONSLQ96HA7 1378 aa23.46■■□□□ 1.35
COL4A1-204ENST00000543140 ZNF777Q9ULD5 760 aaPredicted RBP23.46■■□□□ 1.35
COL4A1-204ENST00000543140 DNMT1P26358 1616 aaKnown RBP23.45■■□□□ 1.34
COL4A1-204ENST00000543140 PLEKHD1A6NEE1 506 aa23.43■■□□□ 1.34
COL4A1-204ENST00000543140 GPATCH8Q9UKJ3 1502 aaKnown RBP23.43■■□□□ 1.34
COL4A1-204ENST00000543140 ATP10BO94823 1461 aa23.43■■□□□ 1.34
COL4A1-204ENST00000543140 PTPRGP23470 1445 aa23.41■■□□□ 1.34
COL4A1-204ENST00000543140 ADCY10Q96PN6 1610 aa23.41■■□□□ 1.34
COL4A1-204ENST00000543140 CAMSAP2Q08AD1 1489 aa23.41■■□□□ 1.34
COL4A1-204ENST00000543140 ITSN2Q9NZM3 1697 aa23.41■■□□□ 1.34
COL4A1-204ENST00000543140 HIRIP3Q9BW71 556 aaPredicted RBP23.39■■□□□ 1.34
COL4A1-204ENST00000543140 DENND4BO75064 1496 aaPredicted RBP23.39■■□□□ 1.34
COL4A1-204ENST00000543140 MPHOSPH9Q99550 1183 aa23.38■■□□□ 1.33
COL4A1-204ENST00000543140 ROCK1Q13464 1354 aa23.38■■□□□ 1.33
COL4A1-204ENST00000543140 FOXD1Q16676 465 aa23.36■■□□□ 1.33
COL4A1-204ENST00000543140 CDC42BPAQ5VT25 1732 aa23.32■■□□□ 1.32
COL4A1-204ENST00000543140 ABCC10Q5T3U5 1492 aa23.29■■□□□ 1.32
COL4A1-204ENST00000543140 DDX10Q13206 875 aaKnown RBP23.29■■□□□ 1.32
COL4A1-204ENST00000543140 ERCC6L2Q5T890 1561 aa23.28■■□□□ 1.32
COL4A1-204ENST00000543140 SHROOM2Q13796 1616 aa23.28■■□□□ 1.32
COL4A1-204ENST00000543140 GTF3C3Q9Y5Q9 886 aa23.27■■□□□ 1.32
COL4A1-204ENST00000543140 NCOA1Q15788 1441 aa23.27■■□□□ 1.32
COL4A1-204ENST00000543140 KDM5BQ9UGL1 1544 aa23.26■■□□□ 1.31
COL4A1-204ENST00000543140 ADGBQ8N7X0 1667 aa23.25■■□□□ 1.31
COL4A1-204ENST00000543140 SLC4A1APQ9BWU0 796 aaKnown RBP23.25■■□□□ 1.31
COL4A1-204ENST00000543140 CROCC2H7BZ55 1655 aa23.24■■□□□ 1.31
COL4A1-204ENST00000543140 ANKRD30AQ9BXX3 1397 aa23.2■■□□□ 1.3
COL4A1-204ENST00000543140 HNRNPMP52272 730 aaKnown RBP eCLIP23.19■■□□□ 1.3
COL4A1-204ENST00000543140 ANKRD30BQ9BXX2 1392 aa23.18■■□□□ 1.3
COL4A1-204ENST00000543140 ADGRL2O95490 1459 aa23.18■■□□□ 1.3
COL4A1-204ENST00000543140 L3MBTL2Q969R5 705 aa23.17■■□□□ 1.3
COL4A1-204ENST00000543140 C9orf84Q5VXU9 1444 aa23.15■■□□□ 1.3
COL4A1-204ENST00000543140 PZPP20742 1482 aa23.14■■□□□ 1.3
COL4A1-204ENST00000543140 TSPY4P0CV99 314 aa23.14■■□□□ 1.29
COL4A1-204ENST00000543140 TSPY10P0CW01 314 aa23.14■■□□□ 1.29
COL4A1-204ENST00000543140 CDC42BPBQ9Y5S2 1711 aa23.13■■□□□ 1.29
COL4A1-204ENST00000543140 ANKRD50Q9ULJ7 1429 aa23.13■■□□□ 1.29
COL4A1-204ENST00000543140 KCNH8Q96L42 1107 aa23.13■■□□□ 1.29
COL4A1-204ENST00000543140 ABCC2Q92887 1545 aa23.11■■□□□ 1.29
COL4A1-204ENST00000543140 RPRD2Q5VT52 1461 aaKnown RBP23.11■■□□□ 1.29
COL4A1-204ENST00000543140 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
COL4A1-204ENST00000543140 PREX2Q70Z35 1606 aa23.09■■□□□ 1.29
COL4A1-204ENST00000543140 SHANK2Q9UPX8 1470 aa23.09■■□□□ 1.29
COL4A1-204ENST00000543140 SAMD9LQ8IVG5 1584 aa23.09■■□□□ 1.29
COL4A1-204ENST00000543140 TTC37Q6PGP7 1564 aa23.08■■□□□ 1.29
COL4A1-204ENST00000543140 MBD5Q9P267 1494 aa23.07■■□□□ 1.28
COL4A1-204ENST00000543140 PKD2Q13563 968 aa23.07■■□□□ 1.28
COL4A1-204ENST00000543140 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.05■■□□□ 1.28
COL4A1-204ENST00000543140 HSPA5P11021 654 aaKnown RBP23.05■■□□□ 1.28
COL4A1-204ENST00000543140 ARHGEF5Q12774 1597 aa23.05■■□□□ 1.28
COL4A1-204ENST00000543140 KIF15Q9NS87 1388 aa23.04■■□□□ 1.28
COL4A1-204ENST00000543140 ARHGAP5Q13017 1502 aa23.04■■□□□ 1.28
COL4A1-204ENST00000543140 NUP155O75694 1391 aa23.03■■□□□ 1.28
COL4A1-204ENST00000543140 TEX14Q8IWB6 1497 aa23.03■■□□□ 1.28
COL4A1-204ENST00000543140 KIAA1107Q9UPP5 1409 aa23.02■■□□□ 1.28
COL4A1-204ENST00000543140 NBPF8Q3BBV2 869 aa23.02■■□□□ 1.28
COL4A1-204ENST00000543140 CCDC141Q6ZP82 1450 aa23.02■■□□□ 1.27
COL4A1-204ENST00000543140 EIF4G2P78344 907 aaKnown RBP eCLIP23■■□□□ 1.27
COL4A1-204ENST00000543140 SYCP2Q9BX26 1530 aa23■■□□□ 1.27
COL4A1-204ENST00000543140 ZCCHC11Q5TAX3 1644 aaKnown RBP23■■□□□ 1.27
COL4A1-204ENST00000543140 MYO5CQ9NQX4 1742 aa22.98■■□□□ 1.27
COL4A1-204ENST00000543140 ANP32CO43423 234 aa22.97■■□□□ 1.27
COL4A1-204ENST00000543140 RSPH4AQ5TD94 716 aa22.96■■□□□ 1.27
COL4A1-204ENST00000543140 WASHC2AQ641Q2 1341 aa22.94■■□□□ 1.26
COL4A1-204ENST00000543140 UHRF1BP1LA0JNW5 1464 aa22.93■■□□□ 1.26
COL4A1-204ENST00000543140 ZNF326Q5BKZ1 582 aaKnown RBP22.91■■□□□ 1.26
COL4A1-204ENST00000543140 KDM5DQ9BY66 1539 aa22.88■■□□□ 1.25
COL4A1-204ENST00000543140 C11orf95C9JLR9 678 aaPredicted RBP22.87■■□□□ 1.25
COL4A1-204ENST00000543140 PLCH2O75038 1416 aa22.87■■□□□ 1.25
COL4A1-204ENST00000543140 ARHGEF12Q9NZN5 1544 aa22.87■■□□□ 1.25
COL4A1-204ENST00000543140 EFCAB2Q5VUJ9 269 aa22.85■■□□□ 1.25
COL4A1-204ENST00000543140 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.85■■□□□ 1.25
COL4A1-204ENST00000543140 PLEKHH2Q8IVE3 1493 aa22.85■■□□□ 1.25
COL4A1-204ENST00000543140 CCER2I3L3R5 266 aa22.84■■□□□ 1.25
COL4A1-204ENST00000543140 MAST1Q9Y2H9 1570 aa22.84■■□□□ 1.25
COL4A1-204ENST00000543140 FAM135AQ9P2D6 1515 aa22.83■■□□□ 1.25
COL4A1-204ENST00000543140 SPATA31E1Q6ZUB1 1445 aa22.79■■□□□ 1.24
COL4A1-204ENST00000543140 CCDC7Q96M83 1385 aa22.79■■□□□ 1.24
COL4A1-204ENST00000543140 KDM2AQ9Y2K7 1162 aa22.79■■□□□ 1.24
COL4A1-204ENST00000543140 PLXNC1O60486 1568 aa22.78■■□□□ 1.24
COL4A1-204ENST00000543140 TRAPPC8Q9Y2L5 1435 aa22.77■■□□□ 1.24
COL4A1-204ENST00000543140 ABCC1P33527 1531 aa22.76■■□□□ 1.23
COL4A1-204ENST00000543140 DCAF11Q8TEB1 546 aa22.74■■□□□ 1.23
COL4A1-204ENST00000543140 UNC13BO14795 1591 aa22.74■■□□□ 1.23
COL4A1-204ENST00000543140 AFAP1Q8N556 730 aa22.74■■□□□ 1.23
COL4A1-204ENST00000543140 WDR7Q9Y4E6 1490 aa22.74■■□□□ 1.23
COL4A1-204ENST00000543140 CNTLNQ9NXG0 1405 aa22.73■■□□□ 1.23
COL4A1-204ENST00000543140 KIF7Q2M1P5 1343 aa22.73■■□□□ 1.23
COL4A1-204ENST00000543140 DUOX2Q9NRD8 1548 aa22.73■■□□□ 1.23
COL4A1-204ENST00000543140 USP47Q96K76 1375 aa22.72■■□□□ 1.23
COL4A1-204ENST00000543140 OSCARQ8IYS5 282 aa22.71■■□□□ 1.23
COL4A1-204ENST00000543140 PELP1Q8IZL8 1130 aaKnown RBP22.7■■□□□ 1.22
COL4A1-204ENST00000543140 SPAG9O60271 1321 aaKnown RBP22.69■■□□□ 1.22
COL4A1-204ENST00000543140 CCDC144AA2RUR9 1427 aa22.68■■□□□ 1.22
COL4A1-204ENST00000543140 UHRF1BP1Q6BDS2 1440 aa22.68■■□□□ 1.22
COL4A1-204ENST00000543140 RGL3Q3MIN7 710 aa22.68■■□□□ 1.22
COL4A1-204ENST00000543140 POLR1AO95602 1720 aaPredicted RBP22.68■■□□□ 1.22
COL4A1-204ENST00000543140 POLR3GLQ9BT43 218 aa22.67■■□□□ 1.22
COL4A1-204ENST00000543140 IQGAP3Q86VI3 1631 aa22.67■■□□□ 1.22
COL4A1-204ENST00000543140 CARD11Q9BXL7 1154 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms