RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 FER1L4A9Z1Z3 1794 aa20■□□□□ 0.79
COPA-205ENST00000541366 CDK13Q14004 1512 aaKnown RBP19.97■□□□□ 0.79
COPA-205ENST00000541366 SCAPERQ9BY12 1400 aa19.97■□□□□ 0.79
COPA-205ENST00000541366 CEBPAP49715 358 aaPredicted RBP19.97■□□□□ 0.79
COPA-205ENST00000541366 MAGI2Q86UL8 1455 aa19.95■□□□□ 0.78
COPA-205ENST00000541366 ILDR2Q71H61 639 aa19.95■□□□□ 0.78
COPA-205ENST00000541366 PLCH2O75038 1416 aa19.92■□□□□ 0.78
COPA-205ENST00000541366 ARHGEF12Q9NZN5 1544 aa19.92■□□□□ 0.78
COPA-205ENST00000541366 DISP3Q9P2K9 1392 aa19.9■□□□□ 0.78
COPA-205ENST00000541366 ATP10AO60312 1499 aa19.9■□□□□ 0.78
COPA-205ENST00000541366 PREX1Q8TCU6 1659 aa19.88■□□□□ 0.77
COPA-205ENST00000541366 C9orf84Q5VXU9 1444 aa19.87■□□□□ 0.77
COPA-205ENST00000541366 STRCQ7RTU9 1775 aa19.87■□□□□ 0.77
COPA-205ENST00000541366 ATP1B4Q9UN42 357 aaPredicted RBP19.86■□□□□ 0.77
COPA-205ENST00000541366 EFCAB2Q5VUJ9 269 aa19.84■□□□□ 0.77
COPA-205ENST00000541366 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
COPA-205ENST00000541366 AFAP1Q8N556 730 aa19.83■□□□□ 0.77
COPA-205ENST00000541366 EEA1Q15075 1411 aa19.82■□□□□ 0.76
COPA-205ENST00000541366 MYO5CQ9NQX4 1742 aa19.82■□□□□ 0.76
COPA-205ENST00000541366 KIF14Q15058 1648 aa19.8■□□□□ 0.76
COPA-205ENST00000541366 SOCS7O14512 581 aa19.8■□□□□ 0.76
COPA-205ENST00000541366 UHRF1BP1Q6BDS2 1440 aa19.79■□□□□ 0.76
COPA-205ENST00000541366 DMRT2Q9Y5R5 561 aa19.79■□□□□ 0.76
COPA-205ENST00000541366 MYT1LQ9UL68 1186 aa19.78■□□□□ 0.76
COPA-205ENST00000541366 SETD1BQ9UPS6 1966 aaKnown RBP19.77■□□□□ 0.76
COPA-205ENST00000541366 ZNF518AQ6AHZ1 1483 aa19.77■□□□□ 0.76
COPA-205ENST00000541366 KDM5CP41229 1560 aa19.75■□□□□ 0.75
COPA-205ENST00000541366 DIP2CQ9Y2E4 1556 aa19.75■□□□□ 0.75
COPA-205ENST00000541366 ARHGAP5Q13017 1502 aa19.75■□□□□ 0.75
COPA-205ENST00000541366 C3P01024 1663 aa19.72■□□□□ 0.75
COPA-205ENST00000541366 ABCA6Q8N139 1617 aa19.72■□□□□ 0.75
COPA-205ENST00000541366 PTPRTO14522 1441 aa19.71■□□□□ 0.75
COPA-205ENST00000541366 CDK11AQ9UQ88 783 aaPredicted RBP19.71■□□□□ 0.75
COPA-205ENST00000541366 ARHGAP35Q9NRY4 1499 aa19.71■□□□□ 0.75
COPA-205ENST00000541366 SPATA31D1Q6ZQQ2 1576 aa19.7■□□□□ 0.74
COPA-205ENST00000541366 TROQ12816 1431 aaPredicted RBP19.7■□□□□ 0.74
COPA-205ENST00000541366 FMN1Q68DA7 1419 aa19.7■□□□□ 0.74
COPA-205ENST00000541366 UBTFP17480 764 aaKnown RBP19.7■□□□□ 0.74
COPA-205ENST00000541366 LTBP4Q8N2S1 1624 aa19.69■□□□□ 0.74
COPA-205ENST00000541366 TRAPPC8Q9Y2L5 1435 aa19.68■□□□□ 0.74
COPA-205ENST00000541366 LRRIQ1Q96JM4 1722 aa19.68■□□□□ 0.74
COPA-205ENST00000541366 CDC42BPBQ9Y5S2 1711 aa19.68■□□□□ 0.74
COPA-205ENST00000541366 REREQ9P2R6 1566 aa19.67■□□□□ 0.74
COPA-205ENST00000541366 MLH3Q9UHC1 1453 aa19.66■□□□□ 0.74
COPA-205ENST00000541366 ESF1Q9H501 851 aaKnown RBP19.65■□□□□ 0.74
COPA-205ENST00000541366 CLIP1P30622 1438 aa19.64■□□□□ 0.73
COPA-205ENST00000541366 NCOA1Q15788 1441 aa19.63■□□□□ 0.73
COPA-205ENST00000541366 AGLP35573 1532 aa19.62■□□□□ 0.73
COPA-205ENST00000541366 FOXD1Q16676 465 aa19.62■□□□□ 0.73
COPA-205ENST00000541366 ABCC1P33527 1531 aa19.61■□□□□ 0.73
COPA-205ENST00000541366 KIDINS220Q9ULH0 1771 aa19.6■□□□□ 0.73
COPA-205ENST00000541366 ITSN2Q9NZM3 1697 aa19.59■□□□□ 0.73
COPA-205ENST00000541366 PREX2Q70Z35 1606 aa19.59■□□□□ 0.73
COPA-205ENST00000541366 NCKAP5LQ9HCH0 1330 aa19.58■□□□□ 0.73
COPA-205ENST00000541366 CAMSAP1Q5T5Y3 1602 aa19.58■□□□□ 0.72
COPA-205ENST00000541366 ZNF335Q9H4Z2 1342 aaPredicted RBP19.55■□□□□ 0.72
COPA-205ENST00000541366 IQSEC2Q5JU85 1478 aa19.55■□□□□ 0.72
COPA-205ENST00000541366 CNTLNQ9NXG0 1405 aa19.55■□□□□ 0.72
COPA-205ENST00000541366 ZNF777Q9ULD5 760 aaPredicted RBP19.53■□□□□ 0.72
COPA-205ENST00000541366 ZMYM3Q14202 1370 aa19.53■□□□□ 0.72
COPA-205ENST00000541366 CDC42BPAQ5VT25 1732 aa19.53■□□□□ 0.72
COPA-205ENST00000541366 UBAP1LF5GYI3 381 aa19.52■□□□□ 0.72
COPA-205ENST00000541366 SAMD9LQ8IVG5 1584 aa19.52■□□□□ 0.71
COPA-205ENST00000541366 NPATQ14207 1427 aa19.51■□□□□ 0.71
COPA-205ENST00000541366 SUPT6HQ7KZ85 1726 aaKnown RBP19.5■□□□□ 0.71
COPA-205ENST00000541366 MROH2AA6NES4 1674 aa19.49■□□□□ 0.71
COPA-205ENST00000541366 HNRNPMP52272 730 aaKnown RBP eCLIP19.49■□□□□ 0.71
COPA-205ENST00000541366 SYCP2Q9BX26 1530 aa19.47■□□□□ 0.71
COPA-205ENST00000541366 CASKIN1Q8WXD9 1431 aa19.47■□□□□ 0.71
COPA-205ENST00000541366 SPAG9O60271 1321 aaKnown RBP19.47■□□□□ 0.71
COPA-205ENST00000541366 CLTCQ00610 1675 aaKnown RBP19.46■□□□□ 0.71
COPA-205ENST00000541366 CCDC18Q5T9S5 1454 aa19.46■□□□□ 0.71
COPA-205ENST00000541366 MYO3AQ8NEV4 1616 aa19.44■□□□□ 0.7
COPA-205ENST00000541366 GGT6Q6P531 493 aa19.43■□□□□ 0.7
COPA-205ENST00000541366 PTPRKQ15262 1439 aa19.42■□□□□ 0.7
COPA-205ENST00000541366 GPATCH8Q9UKJ3 1502 aaKnown RBP19.42■□□□□ 0.7
COPA-205ENST00000541366 CEP170BQ9Y4F5 1589 aaPredicted RBP19.42■□□□□ 0.7
COPA-205ENST00000541366 ZNF142P52746 1687 aaPredicted RBP19.42■□□□□ 0.7
COPA-205ENST00000541366 TCOF1Q13428 1488 aaKnown RBP19.41■□□□□ 0.7
COPA-205ENST00000541366 ATP7AQ04656 1500 aa19.41■□□□□ 0.7
COPA-205ENST00000541366 PKD2Q13563 968 aa19.41■□□□□ 0.7
COPA-205ENST00000541366 PLA2R1Q13018 1463 aa19.41■□□□□ 0.7
COPA-205ENST00000541366 A2MP01023 1474 aa19.4■□□□□ 0.7
COPA-205ENST00000541366 PLXNC1O60486 1568 aa19.4■□□□□ 0.7
COPA-205ENST00000541366 PPP6R1Q9UPN7 881 aa19.39■□□□□ 0.69
COPA-205ENST00000541366 INO80Q9ULG1 1556 aaPredicted RBP19.38■□□□□ 0.69
COPA-205ENST00000541366 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
COPA-205ENST00000541366 HSPA1LP34931 641 aa19.36■□□□□ 0.69
COPA-205ENST00000541366 CFDP1Q9UEE9 299 aaPredicted RBP19.36■□□□□ 0.69
COPA-205ENST00000541366 FYCO1Q9BQS8 1478 aa19.35■□□□□ 0.69
COPA-205ENST00000541366 PIP4K2BP78356 416 aa19.35■□□□□ 0.69
COPA-205ENST00000541366 KIAA1107Q9UPP5 1409 aa19.34■□□□□ 0.69
COPA-205ENST00000541366 ZNF644Q9H582 1327 aaPredicted RBP19.32■□□□□ 0.68
COPA-205ENST00000541366 DNMT1P26358 1616 aaKnown RBP19.32■□□□□ 0.68
COPA-205ENST00000541366 A2ML1A8K2U0 1454 aa19.31■□□□□ 0.68
COPA-205ENST00000541366 MED1Q15648 1581 aaPredicted RBP19.31■□□□□ 0.68
COPA-205ENST00000541366 CCNB3Q8WWL7 1395 aa19.31■□□□□ 0.68
COPA-205ENST00000541366 FBXO31Q5XUX0 539 aaPredicted RBP19.3■□□□□ 0.68
COPA-205ENST00000541366 PLEKHH2Q8IVE3 1493 aa19.29■□□□□ 0.68
COPA-205ENST00000541366 NEURL4Q96JN8 1562 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms