RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PREX2Q70Z35 1606 aa22.79■■□□□ 1.24
USP28-209ENST00000540925 EFCAB2Q5VUJ9 269 aa22.79■■□□□ 1.24
USP28-209ENST00000540925 POGZQ7Z3K3 1410 aa22.78■■□□□ 1.24
USP28-209ENST00000540925 SCAPERQ9BY12 1400 aa22.78■■□□□ 1.24
USP28-209ENST00000540925 ARHGAP5Q13017 1502 aa22.77■■□□□ 1.24
USP28-209ENST00000540925 CDC42BPAQ5VT25 1732 aa22.76■■□□□ 1.23
USP28-209ENST00000540925 ARHGEF40Q8TER5 1519 aa22.76■■□□□ 1.23
USP28-209ENST00000540925 VPS8Q8N3P4 1428 aa22.75■■□□□ 1.23
USP28-209ENST00000540925 MAGI2Q86UL8 1455 aa22.73■■□□□ 1.23
USP28-209ENST00000540925 GPATCH8Q9UKJ3 1502 aaKnown RBP22.72■■□□□ 1.23
USP28-209ENST00000540925 EHBP1L1Q8N3D4 1523 aa22.71■■□□□ 1.23
USP28-209ENST00000540925 MTUS2Q5JR59 1369 aa22.7■■□□□ 1.22
USP28-209ENST00000540925 ABCC1P33527 1531 aa22.7■■□□□ 1.22
USP28-209ENST00000540925 KDM5CP41229 1560 aa22.7■■□□□ 1.22
USP28-209ENST00000540925 ARHGEF12Q9NZN5 1544 aa22.68■■□□□ 1.22
USP28-209ENST00000540925 ZNF518AQ6AHZ1 1483 aa22.68■■□□□ 1.22
USP28-209ENST00000540925 YEATS2Q9ULM3 1422 aa22.68■■□□□ 1.22
USP28-209ENST00000540925 ZFYVE16Q7Z3T8 1539 aa22.67■■□□□ 1.22
USP28-209ENST00000540925 TIAM1Q13009 1591 aa22.67■■□□□ 1.22
USP28-209ENST00000540925 SAMD9LQ8IVG5 1584 aa22.64■■□□□ 1.22
USP28-209ENST00000540925 ITSN2Q9NZM3 1697 aa22.64■■□□□ 1.21
USP28-209ENST00000540925 SIGLEC1Q9BZZ2 1709 aa22.63■■□□□ 1.21
USP28-209ENST00000540925 ADAMTSL3P82987 1691 aa22.63■■□□□ 1.21
USP28-209ENST00000540925 MAP3K1Q13233 1512 aa22.62■■□□□ 1.21
USP28-209ENST00000540925 AFAP1Q8N556 730 aa22.62■■□□□ 1.21
USP28-209ENST00000540925 TRAPPC8Q9Y2L5 1435 aa22.62■■□□□ 1.21
USP28-209ENST00000540925 BCORL1Q5H9F3 1711 aa22.61■■□□□ 1.21
USP28-209ENST00000540925 CCNB3Q8WWL7 1395 aa22.61■■□□□ 1.21
USP28-209ENST00000540925 MLH3Q9UHC1 1453 aa22.6■■□□□ 1.21
USP28-209ENST00000540925 HECW2Q9P2P5 1572 aa22.59■■□□□ 1.21
USP28-209ENST00000540925 KIAA1107Q9UPP5 1409 aa22.58■■□□□ 1.21
USP28-209ENST00000540925 NCOA2Q15596 1464 aa22.58■■□□□ 1.2
USP28-209ENST00000540925 LRRC9Q6ZRR7 1453 aa22.58■■□□□ 1.2
USP28-209ENST00000540925 ATP10AO60312 1499 aa22.57■■□□□ 1.2
USP28-209ENST00000540925 SUPT6HQ7KZ85 1726 aaKnown RBP22.56■■□□□ 1.2
USP28-209ENST00000540925 SYCP2Q9BX26 1530 aa22.56■■□□□ 1.2
USP28-209ENST00000540925 CFDP1Q9UEE9 299 aaPredicted RBP22.55■■□□□ 1.2
USP28-209ENST00000540925 C9orf84Q5VXU9 1444 aa22.55■■□□□ 1.2
USP28-209ENST00000540925 DIP2CQ9Y2E4 1556 aa22.55■■□□□ 1.2
USP28-209ENST00000540925 PLEKHH2Q8IVE3 1493 aa22.54■■□□□ 1.2
USP28-209ENST00000540925 REREQ9P2R6 1566 aa22.54■■□□□ 1.2
USP28-209ENST00000540925 ABCA6Q8N139 1617 aa22.53■■□□□ 1.2
USP28-209ENST00000540925 KIDINS220Q9ULH0 1771 aa22.52■■□□□ 1.2
USP28-209ENST00000540925 MADDQ8WXG6 1647 aa22.51■■□□□ 1.19
USP28-209ENST00000540925 ZNF777Q9ULD5 760 aaPredicted RBP22.51■■□□□ 1.19
USP28-209ENST00000540925 MBD5Q9P267 1494 aa22.5■■□□□ 1.19
USP28-209ENST00000540925 KANK4Q5T7N3 995 aaPredicted RBP22.5■■□□□ 1.19
USP28-209ENST00000540925 ARID4BQ4LE39 1312 aaPredicted RBP22.5■■□□□ 1.19
USP28-209ENST00000540925 PTPRMP28827 1452 aa22.49■■□□□ 1.19
USP28-209ENST00000540925 HNRNPMP52272 730 aaKnown RBP eCLIP22.48■■□□□ 1.19
USP28-209ENST00000540925 ZNF644Q9H582 1327 aaPredicted RBP22.48■■□□□ 1.19
USP28-209ENST00000540925 INO80Q9ULG1 1556 aaPredicted RBP22.46■■□□□ 1.19
USP28-209ENST00000540925 AGLP35573 1532 aa22.44■■□□□ 1.18
USP28-209ENST00000540925 ATP7AQ04656 1500 aa22.42■■□□□ 1.18
USP28-209ENST00000540925 CAMSAP2Q08AD1 1489 aa22.41■■□□□ 1.18
USP28-209ENST00000540925 SPAG9O60271 1321 aaKnown RBP22.41■■□□□ 1.18
USP28-209ENST00000540925 RIMS1Q86UR5 1692 aaKnown RBP22.41■■□□□ 1.18
USP28-209ENST00000540925 FER1L4A9Z1Z3 1794 aa22.38■■□□□ 1.17
USP28-209ENST00000540925 PLXNC1O60486 1568 aa22.38■■□□□ 1.17
USP28-209ENST00000540925 RTEL1-TNFRSF6BF6WH68 1400 aa22.37■■□□□ 1.17
USP28-209ENST00000540925 MYOM3Q5VTT5 1437 aa22.37■■□□□ 1.17
USP28-209ENST00000540925 MYT1LQ9UL68 1186 aa22.36■■□□□ 1.17
USP28-209ENST00000540925 MIA2Q96PC5 1412 aa22.36■■□□□ 1.17
USP28-209ENST00000540925 ARHGEF5Q12774 1597 aa22.36■■□□□ 1.17
USP28-209ENST00000540925 CCDC141Q6ZP82 1450 aa22.35■■□□□ 1.17
USP28-209ENST00000540925 MLECQ14165 292 aa22.34■■□□□ 1.17
USP28-209ENST00000540925 RSPH4AQ5TD94 716 aa22.32■■□□□ 1.16
USP28-209ENST00000540925 A2MP01023 1474 aa22.31■■□□□ 1.16
USP28-209ENST00000540925 ADGBQ8N7X0 1667 aa22.3■■□□□ 1.16
USP28-209ENST00000540925 APLP2Q06481 763 aa22.3■■□□□ 1.16
USP28-209ENST00000540925 FBXO41Q8TF61 875 aa22.29■■□□□ 1.16
USP28-209ENST00000540925 MAST1Q9Y2H9 1570 aa22.25■■□□□ 1.15
USP28-209ENST00000540925 LMTK3Q96Q04 1460 aa22.25■■□□□ 1.15
USP28-209ENST00000540925 DHX29Q7Z478 1369 aaKnown RBP22.24■■□□□ 1.15
USP28-209ENST00000540925 FGD6Q6ZV73 1430 aa22.23■■□□□ 1.15
USP28-209ENST00000540925 TCOF1Q13428 1488 aaKnown RBP22.22■■□□□ 1.15
USP28-209ENST00000540925 PTPN23Q9H3S7 1636 aa22.21■■□□□ 1.15
USP28-209ENST00000540925 CNTLNQ9NXG0 1405 aa22.21■■□□□ 1.15
USP28-209ENST00000540925 C3P01024 1663 aa22.19■■□□□ 1.14
USP28-209ENST00000540925 MROH2AA6NES4 1674 aa22.18■■□□□ 1.14
USP28-209ENST00000540925 CEBPAP49715 358 aaPredicted RBP22.18■■□□□ 1.14
USP28-209ENST00000540925 TSPY4P0CV99 314 aa22.17■■□□□ 1.14
USP28-209ENST00000540925 TSPY10P0CW01 314 aa22.17■■□□□ 1.14
USP28-209ENST00000540925 SHANK2Q9UPX8 1470 aa22.16■■□□□ 1.14
USP28-209ENST00000540925 ABCC5O15440 1437 aa22.16■■□□□ 1.14
USP28-209ENST00000540925 CROCC2H7BZ55 1655 aa22.15■■□□□ 1.14
USP28-209ENST00000540925 DNMT1P26358 1616 aaKnown RBP22.14■■□□□ 1.14
USP28-209ENST00000540925 PPP6R1Q9UPN7 881 aa22.14■■□□□ 1.13
USP28-209ENST00000540925 PREX1Q8TCU6 1659 aa22.12■■□□□ 1.13
USP28-209ENST00000540925 PLPPR3Q6T4P5 718 aa22.12■■□□□ 1.13
USP28-209ENST00000540925 DAPK1P53355 1430 aa22.12■■□□□ 1.13
USP28-209ENST00000540925 CLTCQ00610 1675 aaKnown RBP22.11■■□□□ 1.13
USP28-209ENST00000540925 SETD1BQ9UPS6 1966 aaKnown RBP22.1■■□□□ 1.13
USP28-209ENST00000540925 FAM135AQ9P2D6 1515 aa22.1■■□□□ 1.13
USP28-209ENST00000540925 ZMYM3Q14202 1370 aa22.1■■□□□ 1.13
USP28-209ENST00000540925 GGT6Q6P531 493 aa22.09■■□□□ 1.13
USP28-209ENST00000540925 ESF1Q9H501 851 aaKnown RBP22.09■■□□□ 1.13
USP28-209ENST00000540925 RNF17Q9BXT8 1623 aaKnown RBP22.09■■□□□ 1.13
USP28-209ENST00000540925 NPATQ14207 1427 aa22.08■■□□□ 1.13
USP28-209ENST00000540925 EIF2AK4Q9P2K8 1649 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms