RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 C2orf72A6NCS6 295 aa10.85□□□□□ -0.67
VPS13A-213ENST00000539950 KIF3CO14782 793 aa10.85□□□□□ -0.67
VPS13A-213ENST00000539950 ZNF710Q8N1W2 664 aa10.84□□□□□ -0.67
VPS13A-213ENST00000539950 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
VPS13A-213ENST00000539950 PCDH10Q9P2E7 1040 aa10.84□□□□□ -0.67
VPS13A-213ENST00000539950 EMP3P54852 163 aa10.83□□□□□ -0.68
VPS13A-213ENST00000539950 AMER1Q5JTC6 1135 aaPredicted RBP10.82□□□□□ -0.68
VPS13A-213ENST00000539950 CDAN1Q8IWY9 1227 aa10.82□□□□□ -0.68
VPS13A-213ENST00000539950 HOXB1P14653 301 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-213ENST00000539950 RIMBP2O15034 1052 aa10.79□□□□□ -0.68
VPS13A-213ENST00000539950 GTPBP6O43824 516 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-213ENST00000539950 TMC2Q8TDI7 906 aa10.79□□□□□ -0.68
VPS13A-213ENST00000539950 POTEB3A0JP26 581 aa10.78□□□□□ -0.68
VPS13A-213ENST00000539950 POTEBQ6S5H4 581 aa10.78□□□□□ -0.68
VPS13A-213ENST00000539950 RYDENQ9NUL5 291 aaKnown RBP10.78□□□□□ -0.68
VPS13A-213ENST00000539950 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
VPS13A-213ENST00000539950 GPR153Q6NV75 609 aa10.76□□□□□ -0.69
VPS13A-213ENST00000539950 HS3ST6Q96QI5 342 aa10.75□□□□□ -0.69
VPS13A-213ENST00000539950 ZSWIM6Q9HCJ5 1215 aa10.75□□□□□ -0.69
VPS13A-213ENST00000539950 ARSIQ5FYB1 569 aa10.73□□□□□ -0.69
VPS13A-213ENST00000539950 KHSRPQ92945 711 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS13A-213ENST00000539950 GPHNQ9NQX3 736 aaPredicted RBP10.71□□□□□ -0.69
VPS13A-213ENST00000539950 ERBB3P21860 1342 aa10.7□□□□□ -0.7
VPS13A-213ENST00000539950 FOXK1P85037 733 aa10.69□□□□□ -0.7
VPS13A-213ENST00000539950 DSG2Q14126 1118 aa10.68□□□□□ -0.7
VPS13A-213ENST00000539950 SLC34A2O95436 690 aa10.67□□□□□ -0.7
VPS13A-213ENST00000539950 PLPP6Q8IY26 295 aa10.67□□□□□ -0.7
VPS13A-213ENST00000539950 VARS2Q5ST30 1063 aaKnown RBP10.66□□□□□ -0.7
VPS13A-213ENST00000539950 CRISPLD2Q9H0B8 497 aa10.66□□□□□ -0.7
VPS13A-213ENST00000539950 PCDHGA4Q9Y5G9 962 aa10.66□□□□□ -0.7
VPS13A-213ENST00000539950 BBXQ8WY36 941 aaPredicted RBP10.65□□□□□ -0.7
VPS13A-213ENST00000539950 NCKAP5LQ9HCH0 1330 aa10.64□□□□□ -0.71
VPS13A-213ENST00000539950 KRTAP3-3Q9BYR6 98 aa10.64□□□□□ -0.71
VPS13A-213ENST00000539950 KRTAP3-2Q9BYR7 98 aa10.64□□□□□ -0.71
VPS13A-213ENST00000539950 NUDT7P0C024 238 aa10.63□□□□□ -0.71
VPS13A-213ENST00000539950 ZNF316A6NFI3 1004 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-213ENST00000539950 CADPS2Q86UW7 1296 aa10.6□□□□□ -0.71
VPS13A-213ENST00000539950 PTCD2Q8WV60 388 aaKnown RBP10.6□□□□□ -0.71
VPS13A-213ENST00000539950 PDE4AP27815 886 aa10.58□□□□□ -0.72
VPS13A-213ENST00000539950 PPP1R15BQ5SWA1 713 aa10.58□□□□□ -0.72
VPS13A-213ENST00000539950 LARP6Q9BRS8 491 aaKnown RBP10.57□□□□□ -0.72
VPS13A-213ENST00000539950 LHX6Q9UPM6 363 aa10.57□□□□□ -0.72
VPS13A-213ENST00000539950 KDM4FA0A1W2PPD8 638 aa10.56□□□□□ -0.72
VPS13A-213ENST00000539950 SPNS2Q8IVW8 549 aa10.56□□□□□ -0.72
VPS13A-213ENST00000539950 ZNF687Q8N1G0 1237 aa10.56□□□□□ -0.72
VPS13A-213ENST00000539950 DDX27Q96GQ7 796 aaKnown RBP10.53□□□□□ -0.72
VPS13A-213ENST00000539950 MFSD10Q14728 455 aa10.52□□□□□ -0.73
VPS13A-213ENST00000539950 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.73
VPS13A-213ENST00000539950 OXER1Q8TDS5 423 aa10.52□□□□□ -0.73
VPS13A-213ENST00000539950 UPF1Q92900 1129 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS13A-213ENST00000539950 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-213ENST00000539950 TBC1D12O60347 775 aa10.49□□□□□ -0.73
VPS13A-213ENST00000539950 MMRN1Q13201 1228 aa10.49□□□□□ -0.73
VPS13A-213ENST00000539950 PAXIP1Q6ZW49 1069 aaPredicted RBP10.48□□□□□ -0.73
VPS13A-213ENST00000539950 CFAP44Q96MT7 982 aa10.47□□□□□ -0.73
VPS13A-213ENST00000539950 POTEEQ6S8J3 1075 aa10.46□□□□□ -0.73
VPS13A-213ENST00000539950 EMILIN3Q9NT22 766 aa10.44□□□□□ -0.74
VPS13A-213ENST00000539950 AXIN2Q9Y2T1 843 aa10.44□□□□□ -0.74
VPS13A-213ENST00000539950 PSDA5PKW4 1024 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-213ENST00000539950 PBX2P40425 430 aa10.4□□□□□ -0.74
VPS13A-213ENST00000539950 LSM11P83369 360 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS13A-213ENST00000539950 ANKRD13DQ6ZTN6 518 aa10.4□□□□□ -0.74
VPS13A-213ENST00000539950 EVI5O60447 810 aa10.39□□□□□ -0.75
VPS13A-213ENST00000539950 MAP3K9P80192 1104 aa10.38□□□□□ -0.75
VPS13A-213ENST00000539950 PPP4R3BQ5MIZ7 849 aa10.38□□□□□ -0.75
VPS13A-213ENST00000539950 ANO8Q9HCE9 1232 aaPredicted RBP10.38□□□□□ -0.75
VPS13A-213ENST00000539950 CAMK2BQ13554 666 aa10.37□□□□□ -0.75
VPS13A-213ENST00000539950 ARHGAP33O14559 1287 aa10.36□□□□□ -0.75
VPS13A-213ENST00000539950 PSEN2P49810 448 aa10.35□□□□□ -0.75
VPS13A-213ENST00000539950 ZNF454Q8N9F8 522 aa10.35□□□□□ -0.75
VPS13A-213ENST00000539950 FOSBP53539 338 aa10.33□□□□□ -0.76
VPS13A-213ENST00000539950 DMRTA1Q5VZB9 504 aa10.33□□□□□ -0.76
VPS13A-213ENST00000539950 MYT1LQ9UL68 1186 aa10.32□□□□□ -0.76
VPS13A-213ENST00000539950 DPYSL4O14531 572 aa10.31□□□□□ -0.76
VPS13A-213ENST00000539950 JPH4Q96JJ6 628 aa10.31□□□□□ -0.76
VPS13A-213ENST00000539950 KCNK17Q96T54 332 aa10.3□□□□□ -0.76
VPS13A-213ENST00000539950 RNF166Q96A37 237 aaPredicted RBP10.29□□□□□ -0.76
VPS13A-213ENST00000539950 PTGER2P43116 358 aa10.28□□□□□ -0.76
VPS13A-213ENST00000539950 ADGRD1Q6QNK2 874 aa10.28□□□□□ -0.76
VPS13A-213ENST00000539950 BCL2L12Q9HB09 334 aa10.27□□□□□ -0.77
VPS13A-213ENST00000539950 TSHZ2Q9NRE2 1034 aa10.27□□□□□ -0.77
VPS13A-213ENST00000539950 ZDHHC16Q969W1 377 aa10.26□□□□□ -0.77
VPS13A-213ENST00000539950 ADAM33Q9BZ11 813 aa10.26□□□□□ -0.77
VPS13A-213ENST00000539950 PCDHGA10Q9Y5H3 936 aa10.26□□□□□ -0.77
VPS13A-213ENST00000539950 E2F4Q16254 413 aa10.25□□□□□ -0.77
VPS13A-213ENST00000539950 WDR70Q9NW82 654 aa10.25□□□□□ -0.77
VPS13A-213ENST00000539950 TK2O00142 265 aa10.24□□□□□ -0.77
VPS13A-213ENST00000539950 KCNH8Q96L42 1107 aa10.23□□□□□ -0.77
VPS13A-213ENST00000539950 HRO43593 1189 aa10.22□□□□□ -0.77
VPS13A-213ENST00000539950 PTPREP23469 700 aa10.22□□□□□ -0.77
VPS13A-213ENST00000539950 PHF14O94880 888 aa10.21□□□□□ -0.77
VPS13A-213ENST00000539950 PDIA6Q15084 440 aa10.2□□□□□ -0.78
VPS13A-213ENST00000539950 VPS9D1Q9Y2B5 631 aa10.2□□□□□ -0.78
VPS13A-213ENST00000539950 TYW1BQ6NUM6 668 aa10.19□□□□□ -0.78
VPS13A-213ENST00000539950 DDX12PQ92771 950 aa10.19□□□□□ -0.78
VPS13A-213ENST00000539950 FBXW7Q969H0 707 aa10.17□□□□□ -0.78
VPS13A-213ENST00000539950 ZBED2Q9BTP6 218 aa10.17□□□□□ -0.78
VPS13A-213ENST00000539950 ARIH1Q9Y4X5 557 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-213ENST00000539950 SLC4A5Q9BY07 1137 aa10.16□□□□□ -0.78
VPS13A-213ENST00000539950 SPDYE16A6NNV3 312 aaPredicted RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms