RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 SAMD9Q5K651 1589 aa20.49■□□□□ 0.87
YBX3-207ENST00000539204 SIGLEC1Q9BZZ2 1709 aa20.49■□□□□ 0.87
YBX3-207ENST00000539204 ATP10AO60312 1499 aa20.49■□□□□ 0.87
YBX3-207ENST00000539204 SPATA31D1Q6ZQQ2 1576 aa20.48■□□□□ 0.87
YBX3-207ENST00000539204 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.48■□□□□ 0.87
YBX3-207ENST00000539204 PREX1Q8TCU6 1659 aa20.47■□□□□ 0.87
YBX3-207ENST00000539204 HECW1Q76N89 1606 aa20.46■□□□□ 0.87
YBX3-207ENST00000539204 UHRF1BP1Q6BDS2 1440 aa20.45■□□□□ 0.86
YBX3-207ENST00000539204 ARHGEF12Q9NZN5 1544 aa20.45■□□□□ 0.86
YBX3-207ENST00000539204 CSRNP3Q8WYN3 585 aa20.45■□□□□ 0.86
YBX3-207ENST00000539204 STRCQ7RTU9 1775 aa20.44■□□□□ 0.86
YBX3-207ENST00000539204 PTPRTO14522 1441 aa20.43■□□□□ 0.86
YBX3-207ENST00000539204 C9orf84Q5VXU9 1444 aa20.43■□□□□ 0.86
YBX3-207ENST00000539204 EFCAB2Q5VUJ9 269 aa20.42■□□□□ 0.86
YBX3-207ENST00000539204 SETD1BQ9UPS6 1966 aaKnown RBP20.42■□□□□ 0.86
YBX3-207ENST00000539204 PLCH2O75038 1416 aa20.41■□□□□ 0.86
YBX3-207ENST00000539204 MYT1LQ9UL68 1186 aa20.39■□□□□ 0.85
YBX3-207ENST00000539204 ESF1Q9H501 851 aaKnown RBP20.37■□□□□ 0.85
YBX3-207ENST00000539204 AFAP1Q8N556 730 aa20.35■□□□□ 0.85
YBX3-207ENST00000539204 IQSEC2Q5JU85 1478 aa20.33■□□□□ 0.85
YBX3-207ENST00000539204 LTBP4Q8N2S1 1624 aa20.32■□□□□ 0.84
YBX3-207ENST00000539204 UBAP1LF5GYI3 381 aa20.3■□□□□ 0.84
YBX3-207ENST00000539204 ATP1B4Q9UN42 357 aaPredicted RBP20.3■□□□□ 0.84
YBX3-207ENST00000539204 TRAPPC8Q9Y2L5 1435 aa20.29■□□□□ 0.84
YBX3-207ENST00000539204 CDK11AQ9UQ88 783 aaPredicted RBP20.29■□□□□ 0.84
YBX3-207ENST00000539204 ZNF518AQ6AHZ1 1483 aa20.28■□□□□ 0.84
YBX3-207ENST00000539204 CDK13Q14004 1512 aaKnown RBP20.25■□□□□ 0.83
YBX3-207ENST00000539204 NCOA1Q15788 1441 aa20.24■□□□□ 0.83
YBX3-207ENST00000539204 NCKAP5LQ9HCH0 1330 aa20.21■□□□□ 0.83
YBX3-207ENST00000539204 C3P01024 1663 aa20.2■□□□□ 0.82
YBX3-207ENST00000539204 ZNF335Q9H4Z2 1342 aaPredicted RBP20.2■□□□□ 0.82
YBX3-207ENST00000539204 MYO5CQ9NQX4 1742 aa20.18■□□□□ 0.82
YBX3-207ENST00000539204 KDM5CP41229 1560 aa20.17■□□□□ 0.82
YBX3-207ENST00000539204 CNTLNQ9NXG0 1405 aa20.17■□□□□ 0.82
YBX3-207ENST00000539204 MLH3Q9UHC1 1453 aa20.17■□□□□ 0.82
YBX3-207ENST00000539204 ARHGAP5Q13017 1502 aa20.17■□□□□ 0.82
YBX3-207ENST00000539204 REREQ9P2R6 1566 aa20.17■□□□□ 0.82
YBX3-207ENST00000539204 DIP2CQ9Y2E4 1556 aa20.16■□□□□ 0.82
YBX3-207ENST00000539204 AGLP35573 1532 aa20.15■□□□□ 0.82
YBX3-207ENST00000539204 CAMSAP1Q5T5Y3 1602 aa20.14■□□□□ 0.81
YBX3-207ENST00000539204 PKD2Q13563 968 aa20.14■□□□□ 0.81
YBX3-207ENST00000539204 EEA1Q15075 1411 aa20.12■□□□□ 0.81
YBX3-207ENST00000539204 ZMYM3Q14202 1370 aa20.12■□□□□ 0.81
YBX3-207ENST00000539204 NPATQ14207 1427 aa20.11■□□□□ 0.81
YBX3-207ENST00000539204 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
YBX3-207ENST00000539204 HSPA1LP34931 641 aa20.1■□□□□ 0.81
YBX3-207ENST00000539204 CLIP1P30622 1438 aa20.1■□□□□ 0.81
YBX3-207ENST00000539204 TROQ12816 1431 aaPredicted RBP20.1■□□□□ 0.81
YBX3-207ENST00000539204 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
YBX3-207ENST00000539204 PIP4K2BP78356 416 aa20.08■□□□□ 0.81
YBX3-207ENST00000539204 KIF14Q15058 1648 aa20.08■□□□□ 0.8
YBX3-207ENST00000539204 ABCA6Q8N139 1617 aa20.08■□□□□ 0.8
YBX3-207ENST00000539204 TOM1O60784 492 aa20.07■□□□□ 0.8
YBX3-207ENST00000539204 PPP6R1Q9UPN7 881 aa20.06■□□□□ 0.8
YBX3-207ENST00000539204 UBTFP17480 764 aaKnown RBP20.04■□□□□ 0.8
YBX3-207ENST00000539204 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
YBX3-207ENST00000539204 PLA2R1Q13018 1463 aa20.02■□□□□ 0.8
YBX3-207ENST00000539204 CDC42BPBQ9Y5S2 1711 aa19.99■□□□□ 0.79
YBX3-207ENST00000539204 EHMT2Q96KQ7 1210 aa19.99■□□□□ 0.79
YBX3-207ENST00000539204 ZNF777Q9ULD5 760 aaPredicted RBP19.99■□□□□ 0.79
YBX3-207ENST00000539204 MED1Q15648 1581 aaPredicted RBP19.99■□□□□ 0.79
YBX3-207ENST00000539204 TCOF1Q13428 1488 aaKnown RBP19.99■□□□□ 0.79
YBX3-207ENST00000539204 KIDINS220Q9ULH0 1771 aa19.98■□□□□ 0.79
YBX3-207ENST00000539204 MROH2AA6NES4 1674 aa19.97■□□□□ 0.79
YBX3-207ENST00000539204 GGT6Q6P531 493 aa19.97■□□□□ 0.79
YBX3-207ENST00000539204 SPAG9O60271 1321 aaKnown RBP19.97■□□□□ 0.79
YBX3-207ENST00000539204 ABCC1P33527 1531 aa19.97■□□□□ 0.79
YBX3-207ENST00000539204 PTPRKQ15262 1439 aa19.94■□□□□ 0.78
YBX3-207ENST00000539204 ARHGAP35Q9NRY4 1499 aa19.94■□□□□ 0.78
YBX3-207ENST00000539204 HNRNPMP52272 730 aaKnown RBP eCLIP19.93■□□□□ 0.784e-7■■■■■ 27.2
YBX3-207ENST00000539204 CEP170BQ9Y4F5 1589 aaPredicted RBP19.92■□□□□ 0.78
YBX3-207ENST00000539204 ITSN2Q9NZM3 1697 aa19.92■□□□□ 0.78
YBX3-207ENST00000539204 PREX2Q70Z35 1606 aa19.91■□□□□ 0.78
YBX3-207ENST00000539204 SUPT6HQ7KZ85 1726 aaKnown RBP19.9■□□□□ 0.78
YBX3-207ENST00000539204 SAMD9LQ8IVG5 1584 aa19.89■□□□□ 0.77
YBX3-207ENST00000539204 MYO3AQ8NEV4 1616 aa19.89■□□□□ 0.77
YBX3-207ENST00000539204 ZNF142P52746 1687 aaPredicted RBP19.88■□□□□ 0.77
YBX3-207ENST00000539204 CLTCQ00610 1675 aaKnown RBP19.88■□□□□ 0.77
YBX3-207ENST00000539204 CPS1P31327 1500 aa19.88■□□□□ 0.77
YBX3-207ENST00000539204 SHANK2Q9UPX8 1470 aa19.87■□□□□ 0.77
YBX3-207ENST00000539204 ANKLE2Q86XL3 938 aa19.86■□□□□ 0.77
YBX3-207ENST00000539204 A2ML1A8K2U0 1454 aa19.86■□□□□ 0.77
YBX3-207ENST00000539204 A2MP01023 1474 aa19.86■□□□□ 0.77
YBX3-207ENST00000539204 SENP3Q9H4L4 574 aaPredicted RBP19.83■□□□□ 0.77
YBX3-207ENST00000539204 CFDP1Q9UEE9 299 aaPredicted RBP19.82■□□□□ 0.76
YBX3-207ENST00000539204 LRRIQ1Q96JM4 1722 aa19.82■□□□□ 0.76
YBX3-207ENST00000539204 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
YBX3-207ENST00000539204 DNMT1P26358 1616 aaKnown RBP19.81■□□□□ 0.76
YBX3-207ENST00000539204 THEMISQ8N1K5 641 aaPredicted RBP19.81■□□□□ 0.76
YBX3-207ENST00000539204 KIAA1107Q9UPP5 1409 aa19.8■□□□□ 0.76
YBX3-207ENST00000539204 FBXO31Q5XUX0 539 aaPredicted RBP19.8■□□□□ 0.76
YBX3-207ENST00000539204 ATP7AQ04656 1500 aa19.8■□□□□ 0.76
YBX3-207ENST00000539204 SYCP2Q9BX26 1530 aa19.8■□□□□ 0.76
YBX3-207ENST00000539204 CDC42BPAQ5VT25 1732 aa19.79■□□□□ 0.76
YBX3-207ENST00000539204 CASKIN1Q8WXD9 1431 aa19.79■□□□□ 0.76
YBX3-207ENST00000539204 GPATCH8Q9UKJ3 1502 aaKnown RBP19.79■□□□□ 0.76
YBX3-207ENST00000539204 PLXNC1O60486 1568 aa19.78■□□□□ 0.76
YBX3-207ENST00000539204 TNRQ92752 1358 aa19.77■□□□□ 0.76
YBX3-207ENST00000539204 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.77■□□□□ 0.76
YBX3-207ENST00000539204 PLEKHH2Q8IVE3 1493 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms