RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	GOLGA6L22	H0YM25	854 aa		20.31	■□□□□ 0.84
NCAPD3-213	ENST00000534532	ZRSR1	Q15695	479 aa	Known RBP	20.31	■□□□□ 0.84
NCAPD3-213	ENST00000534532	VPS8	Q8N3P4	1428 aa		20.3	■□□□□ 0.84
NCAPD3-213	ENST00000534532	SETD5	Q9C0A6	1442 aa		20.3	■□□□□ 0.84
NCAPD3-213	ENST00000534532	DDRGK1	Q96HY6	314 aa		20.3	■□□□□ 0.84
NCAPD3-213	ENST00000534532	MYO15B	Q96JP2	1530 aa		20.3	■□□□□ 0.84
NCAPD3-213	ENST00000534532	HNRNPM	P52272	730 aa	Known RBP eCLIP	20.28	■□□□□ 0.84	2e-6	■■■■□ 20.3
NCAPD3-213	ENST00000534532	FGD1	P98174	961 aa		20.26	■□□□□ 0.83
NCAPD3-213	ENST00000534532	RAPGEF2	Q9Y4G8	1499 aa		20.24	■□□□□ 0.83
NCAPD3-213	ENST00000534532	KCNJ4	P48050	445 aa		20.24	■□□□□ 0.83
NCAPD3-213	ENST00000534532	CHMP4A	Q9BY43	222 aa		20.24	■□□□□ 0.83
NCAPD3-213	ENST00000534532	ABCC8	Q09428	1581 aa		20.23	■□□□□ 0.83
NCAPD3-213	ENST00000534532	EIF3A	Q14152	1382 aa	Known RBP	20.23	■□□□□ 0.83
NCAPD3-213	ENST00000534532	MPHOSPH9	Q99550	1183 aa		20.23	■□□□□ 0.83
NCAPD3-213	ENST00000534532	NGDN	Q8NEJ9	315 aa	Known RBP	20.22	■□□□□ 0.83
NCAPD3-213	ENST00000534532	TOP2A	P11388	1531 aa	Known RBP	20.22	■□□□□ 0.83
NCAPD3-213	ENST00000534532	CALD1	Q05682	793 aa	Known RBP	20.22	■□□□□ 0.83
NCAPD3-213	ENST00000534532	TMX4	Q9H1E5	349 aa	Predicted RBP	20.22	■□□□□ 0.83
NCAPD3-213	ENST00000534532	CCDC18	Q5T9S5	1454 aa		20.21	■□□□□ 0.83
NCAPD3-213	ENST00000534532	TERF2IP	Q9NYB0	399 aa		20.21	■□□□□ 0.83
NCAPD3-213	ENST00000534532	ROCK2	O75116	1388 aa	Known RBP	20.21	■□□□□ 0.83
NCAPD3-213	ENST00000534532	ATAD2B	Q9ULI0	1458 aa		20.21	■□□□□ 0.83
NCAPD3-213	ENST00000534532	FOXD1	Q16676	465 aa		20.2	■□□□□ 0.82
NCAPD3-213	ENST00000534532	KANK4	Q5T7N3	995 aa	Predicted RBP	20.2	■□□□□ 0.82
NCAPD3-213	ENST00000534532	ANP32E	Q9BTT0	268 aa		20.2	■□□□□ 0.82
NCAPD3-213	ENST00000534532	PTPRG	P23470	1445 aa		20.2	■□□□□ 0.82
NCAPD3-213	ENST00000534532	TULP1	O00294	542 aa	Predicted RBP	20.18	■□□□□ 0.82
NCAPD3-213	ENST00000534532	ZNF330	Q9Y3S2	320 aa	Predicted RBP	20.18	■□□□□ 0.82
NCAPD3-213	ENST00000534532	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.17	■□□□□ 0.82
NCAPD3-213	ENST00000534532	KTN1	Q86UP2	1357 aa	Known RBP	20.17	■□□□□ 0.82
NCAPD3-213	ENST00000534532	FANCD2	Q9BXW9	1451 aa		20.16	■□□□□ 0.82
NCAPD3-213	ENST00000534532	U2AF1L5	P0DN76	240 aa	Predicted RBP	20.16	■□□□□ 0.82
NCAPD3-213	ENST00000534532	U2AF1	Q01081	240 aa	Known RBP eCLIP	20.16	■□□□□ 0.82
NCAPD3-213	ENST00000534532	SUPT16H	Q9Y5B9	1047 aa	Known RBP	20.16	■□□□□ 0.82
NCAPD3-213	ENST00000534532	HSPA5	P11021	654 aa	Known RBP	20.15	■□□□□ 0.82
NCAPD3-213	ENST00000534532	NBR1	Q14596	966 aa		20.15	■□□□□ 0.82
NCAPD3-213	ENST00000534532	FHOD3	Q2V2M9	1422 aa		20.15	■□□□□ 0.82
NCAPD3-213	ENST00000534532	NAP1L2	Q9ULW6	460 aa	Predicted RBP	20.13	■□□□□ 0.81
NCAPD3-213	ENST00000534532	IPO8	O15397	1037 aa	Known RBP	20.13	■□□□□ 0.81
NCAPD3-213	ENST00000534532	RGS3	P49796	1198 aa		20.13	■□□□□ 0.81
NCAPD3-213	ENST00000534532	NUTM2D	Q5VT03	806 aa	Predicted RBP	20.13	■□□□□ 0.81
NCAPD3-213	ENST00000534532	TAOK2	Q9UL54	1235 aa		20.13	■□□□□ 0.81
NCAPD3-213	ENST00000534532	AMPH	P49418	695 aa		20.09	■□□□□ 0.81
NCAPD3-213	ENST00000534532	ISY1	Q9ULR0	285 aa	Known RBP	20.09	■□□□□ 0.81
NCAPD3-213	ENST00000534532	STK31	Q9BXU1	1019 aa		20.06	■□□□□ 0.8
NCAPD3-213	ENST00000534532	CFAP44	Q96MT7	982 aa		20.06	■□□□□ 0.8
NCAPD3-213	ENST00000534532	HDAC5	Q9UQL6	1122 aa		20.06	■□□□□ 0.8
NCAPD3-213	ENST00000534532	RALBP1	Q15311	655 aa		20.05	■□□□□ 0.8
NCAPD3-213	ENST00000534532	FAM69C	Q0P6D2	419 aa		20.05	■□□□□ 0.8
NCAPD3-213	ENST00000534532	VGF	O15240	615 aa	Predicted RBP	20.04	■□□□□ 0.8
NCAPD3-213	ENST00000534532	MCC	P23508	829 aa		20.04	■□□□□ 0.8
NCAPD3-213	ENST00000534532	NUTM2F	A1L443	756 aa		20.04	■□□□□ 0.8
NCAPD3-213	ENST00000534532	PPP4R2	Q9NY27	417 aa		20.04	■□□□□ 0.8
NCAPD3-213	ENST00000534532	WIZ	O95785	1651 aa		20.03	■□□□□ 0.8
NCAPD3-213	ENST00000534532	TPRN	Q4KMQ1	711 aa		20.03	■□□□□ 0.8
NCAPD3-213	ENST00000534532	RAB3GAP2	Q9H2M9	1393 aa		20.03	■□□□□ 0.8
NCAPD3-213	ENST00000534532	TRIM44	Q96DX7	344 aa	Predicted RBP	20.01	■□□□□ 0.79
NCAPD3-213	ENST00000534532	UACA	Q9BZF9	1416 aa		20	■□□□□ 0.79
NCAPD3-213	ENST00000534532	TRAK1	Q9UPV9	953 aa		20	■□□□□ 0.79
NCAPD3-213	ENST00000534532	LTV1	Q96GA3	475 aa	Predicted RBP	19.99	■□□□□ 0.79
NCAPD3-213	ENST00000534532	HSP90AB1	P08238	724 aa	Known RBP	19.99	■□□□□ 0.79
NCAPD3-213	ENST00000534532	LMOD3	Q0VAK6	560 aa		19.99	■□□□□ 0.79
NCAPD3-213	ENST00000534532	TAF7L	Q5H9L4	462 aa		19.99	■□□□□ 0.79
NCAPD3-213	ENST00000534532	CCER2	I3L3R5	266 aa		19.98	■□□□□ 0.79
NCAPD3-213	ENST00000534532	PTMA	P06454	111 aa	Known RBP	19.98	■□□□□ 0.79
NCAPD3-213	ENST00000534532		G3V3G9	751 aa		19.98	■□□□□ 0.79
NCAPD3-213	ENST00000534532	DCAF8	Q5TAQ9	597 aa		19.98	■□□□□ 0.79
NCAPD3-213	ENST00000534532	GORAB	Q5T7V8	394 aa		19.97	■□□□□ 0.79
NCAPD3-213	ENST00000534532	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	19.97	■□□□□ 0.79
NCAPD3-213	ENST00000534532	GTF2E1	P29083	439 aa	Predicted RBP	19.97	■□□□□ 0.79
NCAPD3-213	ENST00000534532	EVA1C	P58658	441 aa		19.96	■□□□□ 0.79
NCAPD3-213	ENST00000534532	KIAA1211	Q6ZU35	1233 aa		19.96	■□□□□ 0.79
NCAPD3-213	ENST00000534532	SMARCA4	P51532	1647 aa		19.96	■□□□□ 0.79
NCAPD3-213	ENST00000534532	CCDC144A	A2RUR9	1427 aa		19.95	■□□□□ 0.78
NCAPD3-213	ENST00000534532	GOLGA6L4	A6NEF3	574 aa		19.95	■□□□□ 0.78
NCAPD3-213	ENST00000534532	L3MBTL2	Q969R5	705 aa		19.95	■□□□□ 0.78
NCAPD3-213	ENST00000534532	CHMP3	Q9Y3E7	222 aa		19.94	■□□□□ 0.78
NCAPD3-213	ENST00000534532	APBB1	O00213	710 aa		19.93	■□□□□ 0.78
NCAPD3-213	ENST00000534532	GAPVD1	Q14C86	1478 aa		19.92	■□□□□ 0.78
NCAPD3-213	ENST00000534532	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	19.9	■□□□□ 0.78
NCAPD3-213	ENST00000534532	ITPRIP	Q8IWB1	547 aa		19.9	■□□□□ 0.78
NCAPD3-213	ENST00000534532	COG3	Q96JB2	828 aa		19.89	■□□□□ 0.78
NCAPD3-213	ENST00000534532	GOLGA6L6	A8MZA4	724 aa		19.89	■□□□□ 0.77
NCAPD3-213	ENST00000534532	MEX3C	Q5U5Q3	659 aa	Known RBP	19.89	■□□□□ 0.77
NCAPD3-213	ENST00000534532	EVC2	Q86UK5	1308 aa		19.88	■□□□□ 0.77
NCAPD3-213	ENST00000534532	GNL2	Q13823	731 aa	Known RBP	19.88	■□□□□ 0.77
NCAPD3-213	ENST00000534532	HSCB	Q8IWL3	235 aa		19.88	■□□□□ 0.77
NCAPD3-213	ENST00000534532	GPATCH3	Q96I76	525 aa		19.87	■□□□□ 0.77
NCAPD3-213	ENST00000534532	HMMR	O75330	724 aa		19.87	■□□□□ 0.77
NCAPD3-213	ENST00000534532	CLSTN1	O94985	981 aa		19.87	■□□□□ 0.77
NCAPD3-213	ENST00000534532	C1orf141	Q5JVX7	400 aa		19.86	■□□□□ 0.77
NCAPD3-213	ENST00000534532	RWDD1	Q9H446	243 aa	Predicted RBP	19.86	■□□□□ 0.77
NCAPD3-213	ENST00000534532	NRDC	O43847	1150 aa		19.86	■□□□□ 0.77
NCAPD3-213	ENST00000534532	PLCB2	Q00722	1185 aa		19.84	■□□□□ 0.77
NCAPD3-213	ENST00000534532	SMC4	Q9NTJ3	1288 aa		19.84	■□□□□ 0.77
NCAPD3-213	ENST00000534532	NLRP13	Q86W25	1043 aa		19.83	■□□□□ 0.76
NCAPD3-213	ENST00000534532	FRAT2	O75474	233 aa	Predicted RBP	19.83	■□□□□ 0.76
NCAPD3-213	ENST00000534532	PSME1	Q06323	249 aa		19.82	■□□□□ 0.76
NCAPD3-213	ENST00000534532	SLC4A10	Q6U841	1118 aa		19.82	■□□□□ 0.76
NCAPD3-213	ENST00000534532	FGD5	Q6ZNL6	1462 aa		19.82	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms