RNA–Protein interactions for RNA: ENST00000533626.5

EIF3F-208, Transcript of eukaryotic translation initiation factor 3 subunit F, human

APPRIS P1 TSL 2 BASIC

Gene EIF3F, Length 7,540 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EIF3F-208	ENST00000533626	RASSF8	Q8NHQ8	419 aa		11.56	□□□□□ -0.56
EIF3F-208	ENST00000533626	TMX4	Q9H1E5	349 aa	Predicted RBP	11.56	□□□□□ -0.56
EIF3F-208	ENST00000533626	RTF1	Q92541	710 aa	Known RBP	11.56	□□□□□ -0.56
EIF3F-208	ENST00000533626	SRPK2	P78362	688 aa	Known RBP	11.55	□□□□□ -0.56
EIF3F-208	ENST00000533626	NOL8	Q76FK4	1167 aa	Known RBP	11.55	□□□□□ -0.56
EIF3F-208	ENST00000533626	DEK	P35659	375 aa	Known RBP	11.54	□□□□□ -0.56
EIF3F-208	ENST00000533626	FOXD4L1	Q9NU39	408 aa		11.54	□□□□□ -0.56
EIF3F-208	ENST00000533626	GOLGA6L1	Q8N7Z2	621 aa		11.54	□□□□□ -0.56
EIF3F-208	ENST00000533626	STK26	Q9P289	416 aa		11.53	□□□□□ -0.56
EIF3F-208	ENST00000533626	GORAB	Q5T7V8	394 aa		11.53	□□□□□ -0.56
EIF3F-208	ENST00000533626	PES1	O00541	588 aa	Known RBP	11.53	□□□□□ -0.56
EIF3F-208	ENST00000533626	CSB-PGBD3	P0DP91	1061 aa		11.53	□□□□□ -0.56
EIF3F-208	ENST00000533626	CHMP4B	Q9H444	224 aa	Known RBP	11.52	□□□□□ -0.56
EIF3F-208	ENST00000533626	SLK	Q9H2G2	1235 aa	Predicted RBP	11.52	□□□□□ -0.57
EIF3F-208	ENST00000533626	PPP4R2	Q9NY27	417 aa		11.52	□□□□□ -0.57
EIF3F-208	ENST00000533626	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.51	□□□□□ -0.57
EIF3F-208	ENST00000533626	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.51	□□□□□ -0.57
EIF3F-208	ENST00000533626	TAF7L	Q5H9L4	462 aa		11.51	□□□□□ -0.57
EIF3F-208	ENST00000533626	CEP89	Q96ST8	783 aa		11.51	□□□□□ -0.57
EIF3F-208	ENST00000533626	PLEKHD1	A6NEE1	506 aa		11.51	□□□□□ -0.57
EIF3F-208	ENST00000533626	TRIM6-TRIM34	B2RNG4	842 aa		11.5	□□□□□ -0.57
EIF3F-208	ENST00000533626	MS4A1	P11836	297 aa		11.49	□□□□□ -0.57
EIF3F-208	ENST00000533626	TPM4	P67936	248 aa		11.49	□□□□□ -0.57
EIF3F-208	ENST00000533626	MARCH6	O60337	910 aa		11.49	□□□□□ -0.57
EIF3F-208	ENST00000533626	TOMM22	Q9NS69	142 aa		11.48	□□□□□ -0.57
EIF3F-208	ENST00000533626	FRAT2	O75474	233 aa	Predicted RBP	11.47	□□□□□ -0.57
EIF3F-208	ENST00000533626	ITPRIP	Q8IWB1	547 aa		11.47	□□□□□ -0.57
EIF3F-208	ENST00000533626	MORC1	Q86VD1	984 aa		11.46	□□□□□ -0.57
EIF3F-208	ENST00000533626	RAD21	O60216	631 aa		11.46	□□□□□ -0.57
EIF3F-208	ENST00000533626	SCRIB	Q14160	1630 aa		11.46	□□□□□ -0.57
EIF3F-208	ENST00000533626	CNKSR2	Q8WXI2	1034 aa		11.46	□□□□□ -0.57
EIF3F-208	ENST00000533626	CCAR2	Q8N163	923 aa	Known RBP	11.46	□□□□□ -0.58
EIF3F-208	ENST00000533626	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.46	□□□□□ -0.58
EIF3F-208	ENST00000533626	SIN3A	Q96ST3	1273 aa		11.45	□□□□□ -0.58
EIF3F-208	ENST00000533626	MFAP1	P55081	439 aa	Known RBP	11.45	□□□□□ -0.58
EIF3F-208	ENST00000533626	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.45	□□□□□ -0.58
EIF3F-208	ENST00000533626	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.45	□□□□□ -0.58
EIF3F-208	ENST00000533626	GBP4	Q96PP9	640 aa		11.44	□□□□□ -0.58
EIF3F-208	ENST00000533626	DCAF11	Q8TEB1	546 aa		11.44	□□□□□ -0.58
EIF3F-208	ENST00000533626	SLC4A10	Q6U841	1118 aa		11.43	□□□□□ -0.58
EIF3F-208	ENST00000533626	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.43	□□□□□ -0.58
EIF3F-208	ENST00000533626	TPD52L1	Q16890	204 aa	Predicted RBP	11.43	□□□□□ -0.58
EIF3F-208	ENST00000533626	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.42	□□□□□ -0.58
EIF3F-208	ENST00000533626	HTATSF1	O43719	755 aa	Known RBP	11.41	□□□□□ -0.58
EIF3F-208	ENST00000533626	TPM3	P06753	285 aa		11.41	□□□□□ -0.58
EIF3F-208	ENST00000533626	TMF1	P82094	1093 aa		11.4	□□□□□ -0.58
EIF3F-208	ENST00000533626	PTMS	P20962	102 aa		11.4	□□□□□ -0.58
EIF3F-208	ENST00000533626	MSH5	O43196	834 aa		11.4	□□□□□ -0.58
EIF3F-208	ENST00000533626	GTF2E1	P29083	439 aa	Predicted RBP	11.4	□□□□□ -0.58
EIF3F-208	ENST00000533626	SYAP1	Q96A49	352 aa	Predicted RBP	11.4	□□□□□ -0.58
EIF3F-208	ENST00000533626	SET	Q01105	290 aa	Predicted RBP	11.39	□□□□□ -0.59
EIF3F-208	ENST00000533626	SF3A1	Q15459	793 aa	Known RBP	11.39	□□□□□ -0.59
EIF3F-208	ENST00000533626	GPATCH3	Q96I76	525 aa		11.39	□□□□□ -0.59
EIF3F-208	ENST00000533626	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.39	□□□□□ -0.59
EIF3F-208	ENST00000533626	LTV1	Q96GA3	475 aa	Predicted RBP	11.38	□□□□□ -0.59
EIF3F-208	ENST00000533626	TCEAL9	Q9UHQ7	104 aa		11.37	□□□□□ -0.59
EIF3F-208	ENST00000533626	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.37	□□□□□ -0.59
EIF3F-208	ENST00000533626	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.37	□□□□□ -0.59
EIF3F-208	ENST00000533626	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
EIF3F-208	ENST00000533626	APP	P05067	770 aa		11.37	□□□□□ -0.59
EIF3F-208	ENST00000533626	CCDC34	Q96HJ3	373 aa		11.36	□□□□□ -0.59
EIF3F-208	ENST00000533626	CALD1	Q05682	793 aa	Known RBP	11.36	□□□□□ -0.59
EIF3F-208	ENST00000533626	NUTM2F	A1L443	756 aa		11.36	□□□□□ -0.59
EIF3F-208	ENST00000533626	IPO8	O15397	1037 aa	Known RBP	11.36	□□□□□ -0.59
EIF3F-208	ENST00000533626	GOLGA6L3	A6NEY3	463 aa		11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626	GGT6	Q6P531	493 aa		11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626	ZNF592	Q92610	1267 aa		11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626	TSR1	Q2NL82	804 aa	Known RBP	11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626	FBXW7	Q969H0	707 aa		11.35	□□□□□ -0.59
EIF3F-208	ENST00000533626		H3BQV1	296 aa		11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	IFFO2	Q5TF58	517 aa		11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	RSF1	Q96T23	1441 aa	Predicted RBP	11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	CFAP44	Q96MT7	982 aa		11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	CLUAP1	Q96AJ1	413 aa		11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	CLIP1	P30622	1438 aa		11.34	□□□□□ -0.59
EIF3F-208	ENST00000533626	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	KLHL34	Q8N239	644 aa		11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	NGEF	Q8N5V2	710 aa		11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	CCDC146	Q8IYE0	955 aa		11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	STK31	Q9BXU1	1019 aa		11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	RBM19	Q9Y4C8	960 aa	Known RBP	11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.33	□□□□□ -0.6
EIF3F-208	ENST00000533626	HDGF	P51858	240 aa	Known RBP	11.32	□□□□□ -0.6
EIF3F-208	ENST00000533626	RILPL2	Q969X0	211 aa		11.32	□□□□□ -0.6
EIF3F-208	ENST00000533626	KIF16B	Q96L93	1317 aa		11.32	□□□□□ -0.6
EIF3F-208	ENST00000533626	SMC4	Q9NTJ3	1288 aa		11.32	□□□□□ -0.6
EIF3F-208	ENST00000533626	MCTP1	Q6DN14	999 aa		11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	CSPP1	Q1MSJ5	1256 aa		11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.31	□□□□□ -0.6	3e-10	■■■■■ 153.8
EIF3F-208	ENST00000533626	SPAG9	O60271	1321 aa	Known RBP	11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	TRIM34	Q9BYJ4	488 aa		11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	RWDD1	Q9H446	243 aa	Predicted RBP	11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	FOXD1	Q16676	465 aa		11.31	□□□□□ -0.6
EIF3F-208	ENST00000533626	KANK1	Q14678	1352 aa		11.3	□□□□□ -0.6
EIF3F-208	ENST00000533626	CWC22	Q9HCG8	908 aa	Known RBP	11.3	□□□□□ -0.6
EIF3F-208	ENST00000533626	AKAP17A	Q02040	695 aa	Known RBP	11.29	□□□□□ -0.6
EIF3F-208	ENST00000533626	FAM184A	Q8NB25	1140 aa		11.29	□□□□□ -0.6
EIF3F-208	ENST00000533626	RRP12	Q5JTH9	1297 aa	Known RBP	11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 9625.9 ms