RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ABCC5O15440 1437 aa29.9■■■□□ 2.38
VPS28-205ENST00000526204 TROQ12816 1431 aaPredicted RBP29.86■■■□□ 2.37
VPS28-205ENST00000526204 CEP170Q5SW79 1584 aa29.84■■■□□ 2.37
VPS28-205ENST00000526204 CARMIL2Q6F5E8 1435 aa29.83■■■□□ 2.37
VPS28-205ENST00000526204 ZNF644Q9H582 1327 aaPredicted RBP29.8■■■□□ 2.36
VPS28-205ENST00000526204 NUP160Q12769 1436 aa29.78■■■□□ 2.36
VPS28-205ENST00000526204 PRG4Q92954 1404 aaPredicted RBP29.78■■■□□ 2.36
VPS28-205ENST00000526204 ANKRD30BQ9BXX2 1392 aa29.78■■■□□ 2.36
VPS28-205ENST00000526204 EIF4G2P78344 907 aaKnown RBP eCLIP29.76■■■□□ 2.35
VPS28-205ENST00000526204 PLB1Q6P1J6 1458 aa29.76■■■□□ 2.35
VPS28-205ENST00000526204 HSPA5P11021 654 aaKnown RBP29.75■■■□□ 2.35
VPS28-205ENST00000526204 CFDP1Q9UEE9 299 aaPredicted RBP29.75■■■□□ 2.35
VPS28-205ENST00000526204 ITSN2Q9NZM3 1697 aa29.75■■■□□ 2.35
VPS28-205ENST00000526204 L3MBTL2Q969R5 705 aa29.75■■■□□ 2.35
VPS28-205ENST00000526204 RPRD2Q5VT52 1461 aaKnown RBP29.74■■■□□ 2.35
VPS28-205ENST00000526204 JPH4Q96JJ6 628 aa29.74■■■□□ 2.35
VPS28-205ENST00000526204 CAMSAP2Q08AD1 1489 aa29.73■■■□□ 2.35
VPS28-205ENST00000526204 ADCY10Q96PN6 1610 aa29.73■■■□□ 2.35
VPS28-205ENST00000526204 FBLN2P98095 1184 aa29.72■■■□□ 2.35
VPS28-205ENST00000526204 GPATCH8Q9UKJ3 1502 aaKnown RBP29.72■■■□□ 2.35
VPS28-205ENST00000526204 FOXD1Q16676 465 aa29.69■■■□□ 2.34
VPS28-205ENST00000526204 SLC4A1APQ9BWU0 796 aaKnown RBP29.69■■■□□ 2.34
VPS28-205ENST00000526204 WASHC2AQ641Q2 1341 aa29.68■■■□□ 2.34
VPS28-205ENST00000526204 NCOA1Q15788 1441 aa29.67■■■□□ 2.34
VPS28-205ENST00000526204 ADGRL2O95490 1459 aa29.66■■■□□ 2.34
VPS28-205ENST00000526204 TEX14Q8IWB6 1497 aa29.63■■■□□ 2.33
VPS28-205ENST00000526204 ADGBQ8N7X0 1667 aa29.62■■■□□ 2.33
VPS28-205ENST00000526204 KIF14Q15058 1648 aa29.62■■■□□ 2.33
VPS28-205ENST00000526204 PLEKHD1A6NEE1 506 aa29.6■■■□□ 2.33
VPS28-205ENST00000526204 PZPP20742 1482 aa29.59■■■□□ 2.33
VPS28-205ENST00000526204 ANKRD30AQ9BXX3 1397 aa29.59■■■□□ 2.33
VPS28-205ENST00000526204 ABCA8O94911 1581 aa29.58■■■□□ 2.33
VPS28-205ENST00000526204 ZNF777Q9ULD5 760 aaPredicted RBP29.56■■■□□ 2.32
VPS28-205ENST00000526204 CROCC2H7BZ55 1655 aa29.56■■■□□ 2.32
VPS28-205ENST00000526204 CNTLNQ9NXG0 1405 aa29.55■■■□□ 2.32
VPS28-205ENST00000526204 NBPF8Q3BBV2 869 aa29.53■■■□□ 2.32
VPS28-205ENST00000526204 NEFLP07196 543 aa29.53■■■□□ 2.32
VPS28-205ENST00000526204 ATP10BO94823 1461 aa29.52■■■□□ 2.32
VPS28-205ENST00000526204 KIAA1107Q9UPP5 1409 aa29.52■■■□□ 2.32
VPS28-205ENST00000526204 CCDC7Q96M83 1385 aa29.52■■■□□ 2.32
VPS28-205ENST00000526204 FKBP8Q14318 412 aa29.51■■■□□ 2.32
VPS28-205ENST00000526204 ABCC10Q5T3U5 1492 aa29.5■■■□□ 2.31
VPS28-205ENST00000526204 SHANK2Q9UPX8 1470 aa29.5■■■□□ 2.31
VPS28-205ENST00000526204 SPATA31E1Q6ZUB1 1445 aa29.48■■■□□ 2.31
VPS28-205ENST00000526204 ANKRD50Q9ULJ7 1429 aa29.47■■■□□ 2.31
VPS28-205ENST00000526204 CDC42BPAQ5VT25 1732 aa29.44■■■□□ 2.3
VPS28-205ENST00000526204 C11orf95C9JLR9 678 aaPredicted RBP29.44■■■□□ 2.3
VPS28-205ENST00000526204 C9orf84Q5VXU9 1444 aa29.41■■■□□ 2.3
VPS28-205ENST00000526204 PKD2Q13563 968 aa29.41■■■□□ 2.3
VPS28-205ENST00000526204 MBD5Q9P267 1494 aa29.4■■■□□ 2.3
VPS28-205ENST00000526204 TSPY4P0CV99 314 aa29.39■■■□□ 2.3
VPS28-205ENST00000526204 TSPY10P0CW01 314 aa29.39■■■□□ 2.3
VPS28-205ENST00000526204 HNRNPUQ00839 825 aaKnown RBP eCLIP29.39■■■□□ 2.3
VPS28-205ENST00000526204 PTPRGP23470 1445 aa29.38■■■□□ 2.29
VPS28-205ENST00000526204 PRKRIP1Q9H875 184 aaPredicted RBP29.36■■■□□ 2.29
VPS28-205ENST00000526204 KIF7Q2M1P5 1343 aa29.35■■■□□ 2.29
VPS28-205ENST00000526204 TSHZ2Q9NRE2 1034 aa29.35■■■□□ 2.29
VPS28-205ENST00000526204 BCANQ96GW7 911 aa29.34■■■□□ 2.29
VPS28-205ENST00000526204 POLR1AO95602 1720 aaPredicted RBP29.34■■■□□ 2.29
VPS28-205ENST00000526204 MYT1Q01538 1121 aa29.33■■■□□ 2.29
VPS28-205ENST00000526204 ARHGEF5Q12774 1597 aa29.33■■■□□ 2.29
VPS28-205ENST00000526204 NUP155O75694 1391 aa29.33■■■□□ 2.29
VPS28-205ENST00000526204 KDM5DQ9BY66 1539 aa29.33■■■□□ 2.29
VPS28-205ENST00000526204 RSPH4AQ5TD94 716 aa29.29■■■□□ 2.28
VPS28-205ENST00000526204 KIF15Q9NS87 1388 aa29.27■■■□□ 2.28
VPS28-205ENST00000526204 UHRF1BP1Q6BDS2 1440 aa29.27■■■□□ 2.28
VPS28-205ENST00000526204 ARID4BQ4LE39 1312 aaPredicted RBP29.26■■■□□ 2.27
VPS28-205ENST00000526204 USP47Q96K76 1375 aa29.25■■■□□ 2.27
VPS28-205ENST00000526204 ARHGEF12Q9NZN5 1544 aa29.24■■■□□ 2.27
VPS28-205ENST00000526204 HNRNPMP52272 730 aaKnown RBP eCLIP29.24■■■□□ 2.27
VPS28-205ENST00000526204 CCDC141Q6ZP82 1450 aa29.23■■■□□ 2.27
VPS28-205ENST00000526204 MRS2Q9HD23 443 aa29.21■■■□□ 2.27
VPS28-205ENST00000526204 CCDC184Q52MB2 194 aa29.2■■■□□ 2.27
VPS28-205ENST00000526204 PREX2Q70Z35 1606 aa29.19■■■□□ 2.26
VPS28-205ENST00000526204 RALGAPBQ86X10 1494 aa29.19■■■□□ 2.26
VPS28-205ENST00000526204 ZNF326Q5BKZ1 582 aaKnown RBP29.18■■■□□ 2.26
VPS28-205ENST00000526204 SAMD9LQ8IVG5 1584 aa29.17■■■□□ 2.26
VPS28-205ENST00000526204 KDM5CP41229 1560 aa29.16■■■□□ 2.26
VPS28-205ENST00000526204 CHD1O14646 1710 aa29.15■■■□□ 2.26
VPS28-205ENST00000526204 CDC42BPBQ9Y5S2 1711 aa29.14■■■□□ 2.25
VPS28-205ENST00000526204 SHROOM2Q13796 1616 aa29.13■■■□□ 2.25
VPS28-205ENST00000526204 FAM9BQ8IZU0 186 aa29.12■■■□□ 2.25
VPS28-205ENST00000526204 ROCK2O75116 1388 aaKnown RBP29.12■■■□□ 2.25
VPS28-205ENST00000526204 ZBED9Q6R2W3 1325 aa29.11■■■□□ 2.25
VPS28-205ENST00000526204 DHX29Q7Z478 1369 aaKnown RBP29.11■■■□□ 2.25
VPS28-205ENST00000526204 ERICH6BQ5W0A0 696 aa29.1■■■□□ 2.25
VPS28-205ENST00000526204 BCORL1Q5H9F3 1711 aa29.1■■■□□ 2.25
VPS28-205ENST00000526204 CARD11Q9BXL7 1154 aa29.09■■■□□ 2.25
VPS28-205ENST00000526204 FAM135AQ9P2D6 1515 aa29.08■■■□□ 2.24
VPS28-205ENST00000526204 MAST1Q9Y2H9 1570 aa29.07■■■□□ 2.24
VPS28-205ENST00000526204 PLEKHH2Q8IVE3 1493 aa29.05■■■□□ 2.24
VPS28-205ENST00000526204 ARHGAP5Q13017 1502 aa29.04■■■□□ 2.24
VPS28-205ENST00000526204 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.03■■■□□ 2.247e-7■■□□□ 14.3
VPS28-205ENST00000526204 ABCC2Q92887 1545 aa29.03■■■□□ 2.24
VPS28-205ENST00000526204 SYCP2Q9BX26 1530 aa29.02■■■□□ 2.24
VPS28-205ENST00000526204 DCAF11Q8TEB1 546 aa29.02■■■□□ 2.24
VPS28-205ENST00000526204 TTC37Q6PGP7 1564 aa29.01■■■□□ 2.23
VPS28-205ENST00000526204 POLR3GLQ9BT43 218 aa28.99■■■□□ 2.23
VPS28-205ENST00000526204 KDM2AQ9Y2K7 1162 aa28.99■■■□□ 2.23
VPS28-205ENST00000526204 CCDC144AA2RUR9 1427 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms