RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KIF3CO14782 793 aa10.3□□□□□ -0.76
CD44-219ENST00000525685 GTPBP6O43824 516 aaPredicted RBP10.3□□□□□ -0.76
CD44-219ENST00000525685 C2orf72A6NCS6 295 aa10.28□□□□□ -0.76
CD44-219ENST00000525685 DOK7Q18PE1 504 aa10.26□□□□□ -0.77
CD44-219ENST00000525685 TMC2Q8TDI7 906 aa10.24□□□□□ -0.77
CD44-219ENST00000525685 MARVELD3Q96A59 401 aa10.23□□□□□ -0.77
CD44-219ENST00000525685 ZNF710Q8N1W2 664 aa10.22□□□□□ -0.77
CD44-219ENST00000525685 BBXQ8WY36 941 aaPredicted RBP10.22□□□□□ -0.77
CD44-219ENST00000525685 RIMBP2O15034 1052 aa10.21□□□□□ -0.77
CD44-219ENST00000525685 HOXB1P14653 301 aaPredicted RBP10.2□□□□□ -0.78
CD44-219ENST00000525685 ZSWIM6Q9HCJ5 1215 aa10.19□□□□□ -0.78
CD44-219ENST00000525685 GPHNQ9NQX3 736 aaPredicted RBP10.19□□□□□ -0.78
CD44-219ENST00000525685 EMP3P54852 163 aa10.18□□□□□ -0.78
CD44-219ENST00000525685 PCDH10Q9P2E7 1040 aa10.18□□□□□ -0.78
CD44-219ENST00000525685 GPR153Q6NV75 609 aa10.17□□□□□ -0.78
CD44-219ENST00000525685 FOXK1P85037 733 aa10.15□□□□□ -0.78
CD44-219ENST00000525685 CRISPLD2Q9H0B8 497 aa10.15□□□□□ -0.78
CD44-219ENST00000525685 CDAN1Q8IWY9 1227 aa10.14□□□□□ -0.79
CD44-219ENST00000525685 SLC34A2O95436 690 aa10.13□□□□□ -0.79
CD44-219ENST00000525685 DSG2Q14126 1118 aa10.13□□□□□ -0.79
CD44-219ENST00000525685 NCKAP5LQ9HCH0 1330 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 POTEB3A0JP26 581 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 FAM205CA6NFA0 338 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 ARSIQ5FYB1 569 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 POTEBQ6S5H4 581 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 PLPP6Q8IY26 295 aa10.12□□□□□ -0.79
CD44-219ENST00000525685 HS3ST6Q96QI5 342 aa10.11□□□□□ -0.79
CD44-219ENST00000525685 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.11□□□□□ -0.79
CD44-219ENST00000525685 KHSRPQ92945 711 aaKnown RBP eCLIP10.1□□□□□ -0.79
CD44-219ENST00000525685 PDE4AP27815 886 aa10.09□□□□□ -0.79
CD44-219ENST00000525685 SPRYD3Q8NCJ5 442 aa10.09□□□□□ -0.79
CD44-219ENST00000525685 CADPS2Q86UW7 1296 aa10.08□□□□□ -0.8
CD44-219ENST00000525685 PCDHGA4Q9Y5G9 962 aa10.08□□□□□ -0.8
CD44-219ENST00000525685 ERBB3P21860 1342 aa10.07□□□□□ -0.8
CD44-219ENST00000525685 PPP1R15BQ5SWA1 713 aa10.06□□□□□ -0.8
CD44-219ENST00000525685 PTCD2Q8WV60 388 aaKnown RBP10.06□□□□□ -0.8
CD44-219ENST00000525685 LARP6Q9BRS8 491 aaKnown RBP10.05□□□□□ -0.8
CD44-219ENST00000525685 NUDT7P0C024 238 aa10.04□□□□□ -0.8
CD44-219ENST00000525685 MFSD10Q14728 455 aa10.04□□□□□ -0.8
CD44-219ENST00000525685 VARS2Q5ST30 1063 aaKnown RBP10.04□□□□□ -0.8
CD44-219ENST00000525685 PAXIP1Q6ZW49 1069 aaPredicted RBP10.04□□□□□ -0.8
CD44-219ENST00000525685 ZNF316A6NFI3 1004 aaPredicted RBP10.02□□□□□ -0.81
CD44-219ENST00000525685 CFAP44Q96MT7 982 aa10.02□□□□□ -0.81
CD44-219ENST00000525685 KDM4FA0A1W2PPD8 638 aa10.01□□□□□ -0.81
CD44-219ENST00000525685 DDX27Q96GQ7 796 aaKnown RBP10.01□□□□□ -0.81
CD44-219ENST00000525685 OXER1Q8TDS5 423 aa10□□□□□ -0.81
CD44-219ENST00000525685 KRTAP3-3Q9BYR6 98 aa10□□□□□ -0.81
CD44-219ENST00000525685 KRTAP3-2Q9BYR7 98 aa10□□□□□ -0.81
CD44-219ENST00000525685 PLSCR2Q9NRY7 297 aa9.99□□□□□ -0.81
CD44-219ENST00000525685 LHX6Q9UPM6 363 aa9.98□□□□□ -0.81
CD44-219ENST00000525685 TBC1D12O60347 775 aa9.97□□□□□ -0.81
CD44-219ENST00000525685 ZNF687Q8N1G0 1237 aa9.97□□□□□ -0.81
CD44-219ENST00000525685 UPF1Q92900 1129 aaKnown RBP eCLIP9.97□□□□□ -0.81
CD44-219ENST00000525685 EMILIN3Q9NT22 766 aa9.92□□□□□ -0.82
CD44-219ENST00000525685 PSDA5PKW4 1024 aaPredicted RBP9.9□□□□□ -0.82
CD44-219ENST00000525685 CAMK2BQ13554 666 aa9.9□□□□□ -0.82
CD44-219ENST00000525685 SPNS2Q8IVW8 549 aa9.89□□□□□ -0.83
CD44-219ENST00000525685 MAP3K9P80192 1104 aa9.86□□□□□ -0.83
CD44-219ENST00000525685 POTEEQ6S8J3 1075 aa9.86□□□□□ -0.83
CD44-219ENST00000525685 ANO8Q9HCE9 1232 aaPredicted RBP9.86□□□□□ -0.83
CD44-219ENST00000525685 EVI5O60447 810 aa9.85□□□□□ -0.83
CD44-219ENST00000525685 PBX2P40425 430 aa9.85□□□□□ -0.83
CD44-219ENST00000525685 TSHZ2Q9NRE2 1034 aa9.84□□□□□ -0.83
CD44-219ENST00000525685 PPP4R3BQ5MIZ7 849 aa9.83□□□□□ -0.84
CD44-219ENST00000525685 MMRN1Q13201 1228 aa9.82□□□□□ -0.84
CD44-219ENST00000525685 AXIN2Q9Y2T1 843 aa9.82□□□□□ -0.84
CD44-219ENST00000525685 DPYSL4O14531 572 aa9.81□□□□□ -0.84
CD44-219ENST00000525685 FOSBP53539 338 aa9.81□□□□□ -0.84
CD44-219ENST00000525685 LSM11P83369 360 aaKnown RBP eCLIP9.81□□□□□ -0.84
CD44-219ENST00000525685 ARHGAP33O14559 1287 aa9.8□□□□□ -0.84
CD44-219ENST00000525685 ZNF454Q8N9F8 522 aa9.8□□□□□ -0.84
CD44-219ENST00000525685 E2F4Q16254 413 aa9.79□□□□□ -0.84
CD44-219ENST00000525685 JPH4Q96JJ6 628 aa9.79□□□□□ -0.84
CD44-219ENST00000525685 WDR70Q9NW82 654 aa9.79□□□□□ -0.84
CD44-219ENST00000525685 PLCB2Q00722 1185 aa9.78□□□□□ -0.84
CD44-219ENST00000525685 ANKRD13DQ6ZTN6 518 aa9.78□□□□□ -0.84
CD44-219ENST00000525685 PSEN2P49810 448 aa9.76□□□□□ -0.85
CD44-219ENST00000525685 BCL2L12Q9HB09 334 aa9.75□□□□□ -0.85
CD44-219ENST00000525685 DMRTA1Q5VZB9 504 aa9.74□□□□□ -0.85
CD44-219ENST00000525685 ARIH1Q9Y4X5 557 aaPredicted RBP9.74□□□□□ -0.85
CD44-219ENST00000525685 PCDHGA10Q9Y5H3 936 aa9.74□□□□□ -0.85
CD44-219ENST00000525685 PDIA6Q15084 440 aa9.73□□□□□ -0.85
CD44-219ENST00000525685 ZDHHC16Q969W1 377 aa9.73□□□□□ -0.85
CD44-219ENST00000525685 KCNK17Q96T54 332 aa9.73□□□□□ -0.85
CD44-219ENST00000525685 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
CD44-219ENST00000525685 PHF14O94880 888 aa9.71□□□□□ -0.86
CD44-219ENST00000525685 PTGER2P43116 358 aa9.71□□□□□ -0.86
CD44-219ENST00000525685 ADGRD1Q6QNK2 874 aa9.71□□□□□ -0.86
CD44-219ENST00000525685 SPDYE16A6NNV3 312 aaPredicted RBP9.7□□□□□ -0.86
CD44-219ENST00000525685 TK2O00142 265 aa9.7□□□□□ -0.86
CD44-219ENST00000525685 KCNH8Q96L42 1107 aa9.7□□□□□ -0.86
CD44-219ENST00000525685 PTPREP23469 700 aa9.69□□□□□ -0.86
CD44-219ENST00000525685 TYW1BQ6NUM6 668 aa9.69□□□□□ -0.86
CD44-219ENST00000525685 MYT1LQ9UL68 1186 aa9.69□□□□□ -0.86
CD44-219ENST00000525685 DDX12PQ92771 950 aa9.67□□□□□ -0.86
CD44-219ENST00000525685 FBXW7Q969H0 707 aa9.67□□□□□ -0.86
CD44-219ENST00000525685 EPAS1Q99814 870 aa9.67□□□□□ -0.86
CD44-219ENST00000525685 HRO43593 1189 aa9.66□□□□□ -0.86
CD44-219ENST00000525685 RNF166Q96A37 237 aaPredicted RBP9.66□□□□□ -0.86
CD44-219ENST00000525685 SLC4A5Q9BY07 1137 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms