RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	SOX12	O15370	315 aa		13.86	□□□□□ -0.19
PCM1-223	ENST00000524356	TRIM41	Q8WV44	630 aa		13.86	□□□□□ -0.19
PCM1-223	ENST00000524356	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
PCM1-223	ENST00000524356	PHF8	Q9UPP1	1060 aa		13.86	□□□□□ -0.19
PCM1-223	ENST00000524356	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.83	□□□□□ -0.2
PCM1-223	ENST00000524356	RNF25	Q96BH1	459 aa	Predicted RBP	13.82	□□□□□ -0.2
PCM1-223	ENST00000524356	LSM11	P83369	360 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
PCM1-223	ENST00000524356	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.79	□□□□□ -0.2
PCM1-223	ENST00000524356	ZFP91	Q96JP5	570 aa	Predicted RBP	13.79	□□□□□ -0.2
PCM1-223	ENST00000524356	RIOK3	O14730	519 aa	Known RBP	13.77	□□□□□ -0.21
PCM1-223	ENST00000524356	POTEE	Q6S8J3	1075 aa		13.71	□□□□□ -0.21
PCM1-223	ENST00000524356	VGF	O15240	615 aa	Predicted RBP	13.7	□□□□□ -0.22
PCM1-223	ENST00000524356	FBXO22	Q8NEZ5	403 aa		13.69	□□□□□ -0.22
PCM1-223	ENST00000524356	NUDT7	P0C024	238 aa		13.67	□□□□□ -0.22
PCM1-223	ENST00000524356	KIF3C	O14782	793 aa		13.66	□□□□□ -0.22
PCM1-223	ENST00000524356	AXIN2	Q9Y2T1	843 aa		13.66	□□□□□ -0.22
PCM1-223	ENST00000524356	PBX2	P40425	430 aa		13.65	□□□□□ -0.22
PCM1-223	ENST00000524356	PLA2G2E	Q9NZK7	142 aa		13.65	□□□□□ -0.22
PCM1-223	ENST00000524356	NLRP6	P59044	892 aa		13.64	□□□□□ -0.23
PCM1-223	ENST00000524356	LHX6	Q9UPM6	363 aa		13.63	□□□□□ -0.23
PCM1-223	ENST00000524356	C2orf72	A6NCS6	295 aa		13.62	□□□□□ -0.23
PCM1-223	ENST00000524356	MFRP	Q9BY79	579 aa		13.57	□□□□□ -0.24
PCM1-223	ENST00000524356	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.57	□□□□□ -0.24
PCM1-223	ENST00000524356	HCST	Q9UBK5	93 aa		13.57	□□□□□ -0.24
PCM1-223	ENST00000524356	PCDHGA4	Q9Y5G9	962 aa		13.57	□□□□□ -0.24
PCM1-223	ENST00000524356	SLC34A2	O95436	690 aa		13.54	□□□□□ -0.24
PCM1-223	ENST00000524356	ADGRD1	Q6QNK2	874 aa		13.52	□□□□□ -0.25
PCM1-223	ENST00000524356	STK24	Q9Y6E0	443 aa		13.49	□□□□□ -0.25
PCM1-223	ENST00000524356	ARHGAP33	O14559	1287 aa		13.47	□□□□□ -0.25
PCM1-223	ENST00000524356	HR	O43593	1189 aa		13.43	□□□□□ -0.26
PCM1-223	ENST00000524356	KDM4F	A0A1W2PPD8	638 aa		13.42	□□□□□ -0.26
PCM1-223	ENST00000524356	DMRTA1	Q5VZB9	504 aa		13.42	□□□□□ -0.26
PCM1-223	ENST00000524356	TMC2	Q8TDI7	906 aa		13.4	□□□□□ -0.26
PCM1-223	ENST00000524356	TK2	O00142	265 aa		13.39	□□□□□ -0.27
PCM1-223	ENST00000524356	STK25	O00506	426 aa		13.39	□□□□□ -0.27
PCM1-223	ENST00000524356	PSEN2	P49810	448 aa		13.38	□□□□□ -0.27
PCM1-223	ENST00000524356	TAOK2	Q9UL54	1235 aa		13.38	□□□□□ -0.27
PCM1-223	ENST00000524356	PSD	A5PKW4	1024 aa	Predicted RBP	13.37	□□□□□ -0.27
PCM1-223	ENST00000524356	KCTD12	Q96CX2	325 aa	Known RBP	13.33	□□□□□ -0.28
PCM1-223	ENST00000524356	PTCD2	Q8WV60	388 aa	Known RBP	13.31	□□□□□ -0.28
PCM1-223	ENST00000524356	PPP1R37	O75864	691 aa		13.3	□□□□□ -0.28
PCM1-223	ENST00000524356	PPP4R3B	Q5MIZ7	849 aa		13.24	□□□□□ -0.29
PCM1-223	ENST00000524356	FOXK1	P85037	733 aa		13.2	□□□□□ -0.3
PCM1-223	ENST00000524356	PLPP6	Q8IY26	295 aa		13.2	□□□□□ -0.3
PCM1-223	ENST00000524356	KCNK17	Q96T54	332 aa		13.2	□□□□□ -0.3
PCM1-223	ENST00000524356	ECM2	O94769	699 aa	Predicted RBP	13.19	□□□□□ -0.3
PCM1-223	ENST00000524356	STAC3	Q96MF2	364 aa		13.19	□□□□□ -0.3
PCM1-223	ENST00000524356	PTPN5	P54829	565 aa		13.18	□□□□□ -0.3
PCM1-223	ENST00000524356	VPS9D1	Q9Y2B5	631 aa		13.18	□□□□□ -0.3
PCM1-223	ENST00000524356	RGL2	O15211	777 aa		13.16	□□□□□ -0.3
PCM1-223	ENST00000524356	IFFO2	Q5TF58	517 aa		13.15	□□□□□ -0.3
PCM1-223	ENST00000524356	RGS20	O76081	388 aa		13.14	□□□□□ -0.31
PCM1-223	ENST00000524356	DSG2	Q14126	1118 aa		13.14	□□□□□ -0.31
PCM1-223	ENST00000524356	GPHN	Q9NQX3	736 aa	Predicted RBP	13.13	□□□□□ -0.31
PCM1-223	ENST00000524356	IRX2	Q9BZI1	471 aa	Predicted RBP	13.11	□□□□□ -0.31
PCM1-223	ENST00000524356		A0A0G2JS52	829 aa		13.09	□□□□□ -0.31
PCM1-223	ENST00000524356	TBC1D12	O60347	775 aa		13.09	□□□□□ -0.31
PCM1-223	ENST00000524356	KCNH8	Q96L42	1107 aa		13.09	□□□□□ -0.31
PCM1-223	ENST00000524356	THSD4	Q6ZMP0	1018 aa		13.08	□□□□□ -0.32
PCM1-223	ENST00000524356	PKD2	Q13563	968 aa		13.07	□□□□□ -0.32
PCM1-223	ENST00000524356	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.06	□□□□□ -0.32
PCM1-223	ENST00000524356	SLC4A5	Q9BY07	1137 aa		13.06	□□□□□ -0.32
PCM1-223	ENST00000524356	BCL2L12	Q9HB09	334 aa		13.04	□□□□□ -0.32
PCM1-223	ENST00000524356	ZNF454	Q8N9F8	522 aa		13.03	□□□□□ -0.32
PCM1-223	ENST00000524356	OXER1	Q8TDS5	423 aa		13.03	□□□□□ -0.32
PCM1-223	ENST00000524356	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.99	□□□□□ -0.33
PCM1-223	ENST00000524356	WNT2B	Q93097	391 aa		12.99	□□□□□ -0.33
PCM1-223	ENST00000524356	ZBED2	Q9BTP6	218 aa		12.99	□□□□□ -0.33
PCM1-223	ENST00000524356	FOSB	P53539	338 aa		12.97	□□□□□ -0.33
PCM1-223	ENST00000524356	MRPL50	Q8N5N7	158 aa	Known RBP	12.95	□□□□□ -0.34
PCM1-223	ENST00000524356	GOLGA8CP	A6NN73	597 aa		12.94	□□□□□ -0.34
PCM1-223	ENST00000524356	PTPRE	P23469	700 aa		12.94	□□□□□ -0.34
PCM1-223	ENST00000524356	JPH4	Q96JJ6	628 aa		12.87	□□□□□ -0.35
PCM1-223	ENST00000524356	ADAM33	Q9BZ11	813 aa		12.87	□□□□□ -0.35
PCM1-223	ENST00000524356	CRISPLD2	Q9H0B8	497 aa		12.87	□□□□□ -0.35
PCM1-223	ENST00000524356	HS6ST3	Q8IZP7	471 aa		12.86	□□□□□ -0.35
PCM1-223	ENST00000524356	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.86	□□□□□ -0.35
PCM1-223	ENST00000524356	ITGBL1	O95965	494 aa	Predicted RBP	12.85	□□□□□ -0.35
PCM1-223	ENST00000524356	PPP1R15B	Q5SWA1	713 aa		12.85	□□□□□ -0.35
PCM1-223	ENST00000524356	NBPF3	Q9H094	633 aa		12.85	□□□□□ -0.35
PCM1-223	ENST00000524356	ZDHHC16	Q969W1	377 aa		12.83	□□□□□ -0.36
PCM1-223	ENST00000524356		Q6ZNB5	142 aa		12.81	□□□□□ -0.36
PCM1-223	ENST00000524356	EVI5	O60447	810 aa		12.79	□□□□□ -0.36
PCM1-223	ENST00000524356	NCKAP5L	Q9HCH0	1330 aa		12.77	□□□□□ -0.37
PCM1-223	ENST00000524356	BCAM	P50895	628 aa		12.76	□□□□□ -0.37
PCM1-223	ENST00000524356	NKX1-1	Q15270	411 aa	Predicted RBP	12.76	□□□□□ -0.37
PCM1-223	ENST00000524356	PROX2	Q3B8N5	592 aa		12.76	□□□□□ -0.37
PCM1-223	ENST00000524356	PPP1R3G	B7ZBB8	358 aa		12.75	□□□□□ -0.37
PCM1-223	ENST00000524356	ANKK1	Q8NFD2	765 aa		12.75	□□□□□ -0.37
PCM1-223	ENST00000524356	RABGEF1	Q9UJ41	708 aa		12.75	□□□□□ -0.37
PCM1-223	ENST00000524356	COL9A1	P20849	921 aa		12.73	□□□□□ -0.37
PCM1-223	ENST00000524356	LCE2B	O14633	110 aa		12.72	□□□□□ -0.37
PCM1-223	ENST00000524356	SOWAHB	A6NEL2	793 aa		12.7	□□□□□ -0.38
PCM1-223	ENST00000524356	CHGA	P10645	457 aa	Known RBP	12.69	□□□□□ -0.38
PCM1-223	ENST00000524356	PCDHGA10	Q9Y5H3	936 aa		12.69	□□□□□ -0.38
PCM1-223	ENST00000524356	PDE4A	P27815	886 aa		12.67	□□□□□ -0.38
PCM1-223	ENST00000524356	DNAJC5	Q9H3Z4	198 aa		12.67	□□□□□ -0.38
PCM1-223	ENST00000524356	WBP1L	Q9NX94	342 aa		12.67	□□□□□ -0.38
PCM1-223	ENST00000524356	LAPTM4B	Q86VI4	370 aa		12.66	□□□□□ -0.38
PCM1-223	ENST00000524356	KCNC4	Q03721	635 aa		12.65	□□□□□ -0.38

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