RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 PLCH2O75038 1416 aa42.95■■■■■ 4.47
PVT1-219ENST00000523427 HECW1Q76N89 1606 aa42.93■■■■■ 4.46
PVT1-219ENST00000523427 MAGI2Q86UL8 1455 aa42.89■■■■■ 4.46
PVT1-219ENST00000523427 SIGLEC1Q9BZZ2 1709 aa42.89■■■■■ 4.46
PVT1-219ENST00000523427 FMN1Q68DA7 1419 aa42.88■■■■■ 4.46
PVT1-219ENST00000523427 EFCAB2Q5VUJ9 269 aa42.88■■■■■ 4.45
PVT1-219ENST00000523427 CDK11AQ9UQ88 783 aaPredicted RBP42.87■■■■■ 4.45
PVT1-219ENST00000523427 ARHGAP35Q9NRY4 1499 aa42.85■■■■■ 4.45
PVT1-219ENST00000523427 MYT1LQ9UL68 1186 aa42.77■■■■■ 4.44
PVT1-219ENST00000523427 ATP10AO60312 1499 aa42.74■■■■■ 4.43
PVT1-219ENST00000523427 MYO5CQ9NQX4 1742 aa42.74■■■■■ 4.43
PVT1-219ENST00000523427 CHIC1Q5VXU3 224 aa42.74■■■■■ 4.43
PVT1-219ENST00000523427 KIF14Q15058 1648 aa42.74■■■■■ 4.43
PVT1-219ENST00000523427 FER1L4A9Z1Z3 1794 aa42.72■■■■■ 4.43
PVT1-219ENST00000523427 AFAP1Q8N556 730 aa42.7■■■■■ 4.43
PVT1-219ENST00000523427 TROQ12816 1431 aaPredicted RBP42.69■■■■■ 4.42
PVT1-219ENST00000523427 C9orf84Q5VXU9 1444 aa42.69■■■■■ 4.42
PVT1-219ENST00000523427 ARHGAP5Q13017 1502 aa42.68■■■■■ 4.42
PVT1-219ENST00000523427 CEBPAP49715 358 aaPredicted RBP42.68■■■■■ 4.42
PVT1-219ENST00000523427 CLIP1P30622 1438 aa42.65■■■■■ 4.42
PVT1-219ENST00000523427 ARHGEF12Q9NZN5 1544 aa42.61■■■■■ 4.41
PVT1-219ENST00000523427 ZNF518AQ6AHZ1 1483 aa42.6■■■■■ 4.41
PVT1-219ENST00000523427 LRRIQ1Q96JM4 1722 aa42.52■■■■■ 4.4
PVT1-219ENST00000523427 CERKQ8TCT0 537 aa42.51■■■■■ 4.4
PVT1-219ENST00000523427 KDM5CP41229 1560 aa42.46■■■■■ 4.39
PVT1-219ENST00000523427 CDC42BPBQ9Y5S2 1711 aa42.41■■■■■ 4.38
PVT1-219ENST00000523427 DIP2CQ9Y2E4 1556 aa42.41■■■■■ 4.38
PVT1-219ENST00000523427 PREX1Q8TCU6 1659 aa42.41■■■■■ 4.38
PVT1-219ENST00000523427 TRAPPC8Q9Y2L5 1435 aa42.4■■■■■ 4.38
PVT1-219ENST00000523427 CASKIN1Q8WXD9 1431 aa42.38■■■■■ 4.38
PVT1-219ENST00000523427 ESF1Q9H501 851 aaKnown RBP42.38■■■■■ 4.37
PVT1-219ENST00000523427 ZNF777Q9ULD5 760 aaPredicted RBP42.34■■■■■ 4.37
PVT1-219ENST00000523427 UHRF1BP1Q6BDS2 1440 aa42.34■■■■■ 4.37
PVT1-219ENST00000523427 CCDC18Q5T9S5 1454 aa42.34■■■■■ 4.37
PVT1-219ENST00000523427 MLH3Q9UHC1 1453 aa42.34■■■■■ 4.37
PVT1-219ENST00000523427 ABCA6Q8N139 1617 aa42.34■■■■■ 4.37
PVT1-219ENST00000523427 PREX2Q70Z35 1606 aa42.31■■■■■ 4.36
PVT1-219ENST00000523427 ABCC1P33527 1531 aa42.3■■■■■ 4.36
PVT1-219ENST00000523427 DMRT2Q9Y5R5 561 aa42.28■■■■■ 4.36
PVT1-219ENST00000523427 REREQ9P2R6 1566 aa42.25■■■■■ 4.35
PVT1-219ENST00000523427 ITSN2Q9NZM3 1697 aa42.23■■■■■ 4.35
PVT1-219ENST00000523427 SETD1BQ9UPS6 1966 aaKnown RBP42.2■■■■■ 4.35
PVT1-219ENST00000523427 STRCQ7RTU9 1775 aa42.19■■■■■ 4.34
PVT1-219ENST00000523427 AGLP35573 1532 aa42.18■■■■■ 4.34
PVT1-219ENST00000523427 C3P01024 1663 aa42.18■■■■■ 4.34
PVT1-219ENST00000523427 CDC42BPAQ5VT25 1732 aa42.17■■■■■ 4.34
PVT1-219ENST00000523427 KIDINS220Q9ULH0 1771 aa42.15■■■■■ 4.34
PVT1-219ENST00000523427 HNRNPMP52272 730 aaKnown RBP eCLIP42.15■■■■■ 4.346e-7■■■□□ 16.1
PVT1-219ENST00000523427 FYCO1Q9BQS8 1478 aa42.15■■■■■ 4.34
PVT1-219ENST00000523427 SPAG9O60271 1321 aaKnown RBP42.11■■■■■ 4.33
PVT1-219ENST00000523427 SAMD9LQ8IVG5 1584 aa42.07■■■■■ 4.33
PVT1-219ENST00000523427 GPATCH8Q9UKJ3 1502 aaKnown RBP42.07■■■■■ 4.33
PVT1-219ENST00000523427 SYCP2Q9BX26 1530 aa42.06■■■■■ 4.32
PVT1-219ENST00000523427 CNTLNQ9NXG0 1405 aa42.04■■■■■ 4.32
PVT1-219ENST00000523427 CFDP1Q9UEE9 299 aaPredicted RBP42.04■■■■■ 4.32
PVT1-219ENST00000523427 PTPRTO14522 1441 aa41.99■■■■■ 4.31
PVT1-219ENST00000523427 CCNB3Q8WWL7 1395 aa41.97■■■■■ 4.31
PVT1-219ENST00000523427 ZMYM3Q14202 1370 aa41.95■■■■■ 4.31
PVT1-219ENST00000523427 SUPT6HQ7KZ85 1726 aaKnown RBP41.95■■■■■ 4.31
PVT1-219ENST00000523427 MTUS2Q5JR59 1369 aa41.92■■■■■ 4.3
PVT1-219ENST00000523427 GGT6Q6P531 493 aa41.91■■■■■ 4.3
PVT1-219ENST00000523427 ATP7AQ04656 1500 aa41.9■■■■■ 4.3
PVT1-219ENST00000523427 NCOA1Q15788 1441 aa41.89■■■■■ 4.3
PVT1-219ENST00000523427 KIAA1107Q9UPP5 1409 aa41.87■■■■■ 4.29
PVT1-219ENST00000523427 DISP3Q9P2K9 1392 aa41.87■■■■■ 4.29
PVT1-219ENST00000523427 PLEKHH2Q8IVE3 1493 aa41.86■■■■■ 4.29
PVT1-219ENST00000523427 NPATQ14207 1427 aa41.85■■■■■ 4.29
PVT1-219ENST00000523427 A2MP01023 1474 aa41.85■■■■■ 4.29
PVT1-219ENST00000523427 ZNF644Q9H582 1327 aaPredicted RBP41.84■■■■■ 4.29
PVT1-219ENST00000523427 NCKAP5LQ9HCH0 1330 aa41.83■■■■■ 4.29
PVT1-219ENST00000523427 CAMSAP1Q5T5Y3 1602 aa41.83■■■■■ 4.29
PVT1-219ENST00000523427 MROH2AA6NES4 1674 aa41.8■■■■■ 4.28
PVT1-219ENST00000523427 CLTCQ00610 1675 aaKnown RBP41.79■■■■■ 4.28
PVT1-219ENST00000523427 LTBP4Q8N2S1 1624 aa41.78■■■■■ 4.28
PVT1-219ENST00000523427 INO80Q9ULG1 1556 aaPredicted RBP41.78■■■■■ 4.28
PVT1-219ENST00000523427 PLXNC1O60486 1568 aa41.73■■■■■ 4.27
PVT1-219ENST00000523427 ILDR2Q71H61 639 aa41.71■■■■■ 4.27
PVT1-219ENST00000523427 PTPRKQ15262 1439 aa41.69■■■■■ 4.26
PVT1-219ENST00000523427 ZNF335Q9H4Z2 1342 aaPredicted RBP41.68■■■■■ 4.26
PVT1-219ENST00000523427 TIAM1Q13009 1591 aa41.66■■■■■ 4.26
PVT1-219ENST00000523427 MYO3AQ8NEV4 1616 aa41.63■■■■■ 4.26
PVT1-219ENST00000523427 MBD5Q9P267 1494 aa41.61■■■■■ 4.25
PVT1-219ENST00000523427 EHBP1L1Q8N3D4 1523 aa41.61■■■■■ 4.25
PVT1-219ENST00000523427 PKD2Q13563 968 aa41.61■■■■■ 4.25
PVT1-219ENST00000523427 CEP170BQ9Y4F5 1589 aaPredicted RBP41.59■■■■■ 4.25
PVT1-219ENST00000523427 ADGBQ8N7X0 1667 aa41.59■■■■■ 4.25
PVT1-219ENST00000523427 PPP6R1Q9UPN7 881 aa41.59■■■■■ 4.25
PVT1-219ENST00000523427 IQSEC2Q5JU85 1478 aa41.57■■■■■ 4.25
PVT1-219ENST00000523427 UBAP1LF5GYI3 381 aa41.55■■■■■ 4.24
PVT1-219ENST00000523427 KIF3BO15066 747 aa41.55■■■■■ 4.24
PVT1-219ENST00000523427 CEP162Q5TB80 1403 aa41.54■■■■■ 4.24
PVT1-219ENST00000523427 PLA2R1Q13018 1463 aa41.53■■■■■ 4.24
PVT1-219ENST00000523427 DHX29Q7Z478 1369 aaKnown RBP41.53■■■■■ 4.24
PVT1-219ENST00000523427 ZNF142P52746 1687 aaPredicted RBP41.53■■■■■ 4.24
PVT1-219ENST00000523427 RTEL1-TNFRSF6BF6WH68 1400 aa41.51■■■■■ 4.24
PVT1-219ENST00000523427 FBXO31Q5XUX0 539 aaPredicted RBP41.5■■■■■ 4.23
PVT1-219ENST00000523427 TCOF1Q13428 1488 aaKnown RBP41.48■■■■■ 4.23
PVT1-219ENST00000523427 SPATA31D1Q6ZQQ2 1576 aa41.47■■■■■ 4.23
PVT1-219ENST00000523427 SOCS7O14512 581 aa41.44■■■■■ 4.22
PVT1-219ENST00000523427 A2ML1A8K2U0 1454 aa41.43■■■■■ 4.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms