RNA–Protein interactions for RNA: ENST00000520417.1

SKP1-207, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-207ENST00000520417 TMC2Q8TDI7 906 aa12.43□□□□□ -0.42
SKP1-207ENST00000520417 C2orf72A6NCS6 295 aa12.41□□□□□ -0.42
SKP1-207ENST00000520417 GTPBP6O43824 516 aaPredicted RBP12.41□□□□□ -0.42
SKP1-207ENST00000520417 DOK7Q18PE1 504 aa12.41□□□□□ -0.42
SKP1-207ENST00000520417 MARVELD3Q96A59 401 aa12.4□□□□□ -0.42
SKP1-207ENST00000520417 HOXB3P14651 431 aaPredicted RBP12.38□□□□□ -0.43
SKP1-207ENST00000520417 BBXQ8WY36 941 aaPredicted RBP12.38□□□□□ -0.43
SKP1-207ENST00000520417 RIMBP2O15034 1052 aa12.37□□□□□ -0.43
SKP1-207ENST00000520417 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.35□□□□□ -0.43
SKP1-207ENST00000520417 EMP3P54852 163 aa12.34□□□□□ -0.43
SKP1-207ENST00000520417 KIF3CO14782 793 aa12.33□□□□□ -0.44
SKP1-207ENST00000520417 CFAP44Q96MT7 982 aa12.29□□□□□ -0.44
SKP1-207ENST00000520417 FAM205CA6NFA0 338 aa12.27□□□□□ -0.45
SKP1-207ENST00000520417 SPRYD3Q8NCJ5 442 aa12.27□□□□□ -0.45
SKP1-207ENST00000520417 GPHNQ9NQX3 736 aaPredicted RBP12.27□□□□□ -0.45
SKP1-207ENST00000520417 HOXB1P14653 301 aaPredicted RBP12.26□□□□□ -0.45
SKP1-207ENST00000520417 ARSIQ5FYB1 569 aa12.26□□□□□ -0.45
SKP1-207ENST00000520417 PAXIP1Q6ZW49 1069 aaPredicted RBP12.26□□□□□ -0.45
SKP1-207ENST00000520417 PLPP6Q8IY26 295 aa12.25□□□□□ -0.45
SKP1-207ENST00000520417 DSG2Q14126 1118 aa12.24□□□□□ -0.45
SKP1-207ENST00000520417 CDAN1Q8IWY9 1227 aa12.24□□□□□ -0.45
SKP1-207ENST00000520417 ZSWIM6Q9HCJ5 1215 aa12.24□□□□□ -0.45
SKP1-207ENST00000520417 ERBB3P21860 1342 aa12.23□□□□□ -0.45
SKP1-207ENST00000520417 KHSRPQ92945 711 aaKnown RBP eCLIP12.23□□□□□ -0.453e-7■■■□□ 17.1
SKP1-207ENST00000520417 PDE4AP27815 886 aa12.22□□□□□ -0.45
SKP1-207ENST00000520417 FOXK1P85037 733 aa12.22□□□□□ -0.45
SKP1-207ENST00000520417 GPR153Q6NV75 609 aa12.21□□□□□ -0.45
SKP1-207ENST00000520417 HS3ST6Q96QI5 342 aa12.2□□□□□ -0.46
SKP1-207ENST00000520417 LARP6Q9BRS8 491 aaKnown RBP12.2□□□□□ -0.46
SKP1-207ENST00000520417 NCKAP5LQ9HCH0 1330 aa12.19□□□□□ -0.46
SKP1-207ENST00000520417 CRISPLD2Q9H0B8 497 aa12.19□□□□□ -0.46
SKP1-207ENST00000520417 PCDH10Q9P2E7 1040 aa12.18□□□□□ -0.46
SKP1-207ENST00000520417 PPP1R15BQ5SWA1 713 aa12.17□□□□□ -0.46
SKP1-207ENST00000520417 CADPS2Q86UW7 1296 aa12.17□□□□□ -0.46
SKP1-207ENST00000520417 PCDHGA4Q9Y5G9 962 aa12.17□□□□□ -0.46
SKP1-207ENST00000520417 NUDT7P0C024 238 aa12.16□□□□□ -0.46
SKP1-207ENST00000520417 PLSCR2Q9NRY7 297 aa12.16□□□□□ -0.46
SKP1-207ENST00000520417 VARS2Q5ST30 1063 aaKnown RBP12.15□□□□□ -0.46
SKP1-207ENST00000520417 DDX27Q96GQ7 796 aaKnown RBP12.15□□□□□ -0.46
SKP1-207ENST00000520417 POTEB3A0JP26 581 aa12.14□□□□□ -0.47
SKP1-207ENST00000520417 SLC34A2O95436 690 aa12.14□□□□□ -0.47
SKP1-207ENST00000520417 POTEBQ6S5H4 581 aa12.14□□□□□ -0.47
SKP1-207ENST00000520417 UPF1Q92900 1129 aaKnown RBP eCLIP12.14□□□□□ -0.47
SKP1-207ENST00000520417 TBC1D12O60347 775 aa12.11□□□□□ -0.47
SKP1-207ENST00000520417 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
SKP1-207ENST00000520417 PTCD2Q8WV60 388 aaKnown RBP12.08□□□□□ -0.48
SKP1-207ENST00000520417 LHX6Q9UPM6 363 aa12.06□□□□□ -0.48
SKP1-207ENST00000520417 MFSD10Q14728 455 aa12.04□□□□□ -0.48
SKP1-207ENST00000520417 OXER1Q8TDS5 423 aa12.02□□□□□ -0.49
SKP1-207ENST00000520417 MAP3K9P80192 1104 aa12.01□□□□□ -0.49
SKP1-207ENST00000520417 ZNF687Q8N1G0 1237 aa11.99□□□□□ -0.49
SKP1-207ENST00000520417 WDR70Q9NW82 654 aa11.99□□□□□ -0.49
SKP1-207ENST00000520417 KRTAP3-3Q9BYR6 98 aa11.98□□□□□ -0.49
SKP1-207ENST00000520417 KRTAP3-2Q9BYR7 98 aa11.98□□□□□ -0.49
SKP1-207ENST00000520417 EMILIN3Q9NT22 766 aa11.96□□□□□ -0.49
SKP1-207ENST00000520417 TSHZ2Q9NRE2 1034 aa11.95□□□□□ -0.5
SKP1-207ENST00000520417 EVI5O60447 810 aa11.94□□□□□ -0.5
SKP1-207ENST00000520417 PSDA5PKW4 1024 aaPredicted RBP11.93□□□□□ -0.5
SKP1-207ENST00000520417 KDM4FA0A1W2PPD8 638 aa11.92□□□□□ -0.5
SKP1-207ENST00000520417 AXIN2Q9Y2T1 843 aa11.92□□□□□ -0.5
SKP1-207ENST00000520417 PPP4R3BQ5MIZ7 849 aa11.91□□□□□ -0.5
SKP1-207ENST00000520417 ANKRD13DQ6ZTN6 518 aa11.91□□□□□ -0.5
SKP1-207ENST00000520417 SPNS2Q8IVW8 549 aa11.9□□□□□ -0.5
SKP1-207ENST00000520417 ZNF454Q8N9F8 522 aa11.9□□□□□ -0.5
SKP1-207ENST00000520417 DPYSL4O14531 572 aa11.89□□□□□ -0.51
SKP1-207ENST00000520417 CAMK2BQ13554 666 aa11.87□□□□□ -0.51
SKP1-207ENST00000520417 PLCB2Q00722 1185 aa11.86□□□□□ -0.51
SKP1-207ENST00000520417 E2F4Q16254 413 aa11.86□□□□□ -0.51
SKP1-207ENST00000520417 PBX2P40425 430 aa11.84□□□□□ -0.51
SKP1-207ENST00000520417 LSM11P83369 360 aaKnown RBP eCLIP11.83□□□□□ -0.52
SKP1-207ENST00000520417 POTEEQ6S8J3 1075 aa11.83□□□□□ -0.52
SKP1-207ENST00000520417 KCNH8Q96L42 1107 aa11.83□□□□□ -0.52
SKP1-207ENST00000520417 ARHGAP33O14559 1287 aa11.82□□□□□ -0.52
SKP1-207ENST00000520417 PSEN2P49810 448 aa11.82□□□□□ -0.52
SKP1-207ENST00000520417 KCNK17Q96T54 332 aa11.82□□□□□ -0.52
SKP1-207ENST00000520417 ANO8Q9HCE9 1232 aaPredicted RBP11.82□□□□□ -0.52
SKP1-207ENST00000520417 MMRN1Q13201 1228 aa11.81□□□□□ -0.52
SKP1-207ENST00000520417 FOSBP53539 338 aa11.8□□□□□ -0.52
SKP1-207ENST00000520417 HAP1P54257 671 aaPredicted RBP11.8□□□□□ -0.52
SKP1-207ENST00000520417 JPH4Q96JJ6 628 aa11.79□□□□□ -0.52
SKP1-207ENST00000520417 ZDHHC16Q969W1 377 aa11.77□□□□□ -0.53
SKP1-207ENST00000520417 DMRTA1Q5VZB9 504 aa11.76□□□□□ -0.53
SKP1-207ENST00000520417 DDX12PQ92771 950 aa11.76□□□□□ -0.53
SKP1-207ENST00000520417 PTPREP23469 700 aa11.75□□□□□ -0.53
SKP1-207ENST00000520417 ADAM33Q9BZ11 813 aa11.74□□□□□ -0.53
SKP1-207ENST00000520417 BCL2L12Q9HB09 334 aa11.74□□□□□ -0.53
SKP1-207ENST00000520417 PCDHGA10Q9Y5H3 936 aa11.74□□□□□ -0.53
SKP1-207ENST00000520417 PHF14O94880 888 aa11.72□□□□□ -0.53
SKP1-207ENST00000520417 MYT1LQ9UL68 1186 aa11.72□□□□□ -0.53
SKP1-207ENST00000520417 SPDYE16A6NNV3 312 aaPredicted RBP11.71□□□□□ -0.53
SKP1-207ENST00000520417 PDIA6Q15084 440 aa11.71□□□□□ -0.53
SKP1-207ENST00000520417 TYW1BQ6NUM6 668 aa11.71□□□□□ -0.53
SKP1-207ENST00000520417 ADGRD1Q6QNK2 874 aa11.71□□□□□ -0.53
SKP1-207ENST00000520417 RBM33Q96EV2 1170 aaKnown RBP11.71□□□□□ -0.53
SKP1-207ENST00000520417 STAC3Q96MF2 364 aa11.7□□□□□ -0.54
SKP1-207ENST00000520417 GRXCR2A6NFK2 248 aa11.69□□□□□ -0.54
SKP1-207ENST00000520417 NBR1Q14596 966 aa11.69□□□□□ -0.54
SKP1-207ENST00000520417 RNF166Q96A37 237 aaPredicted RBP11.69□□□□□ -0.54
SKP1-207ENST00000520417 PTGER2P43116 358 aa11.68□□□□□ -0.54
SKP1-207ENST00000520417 FBXW7Q969H0 707 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 166.3 ms