RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ARHGEF40Q8TER5 1519 aa32.08■■■□□ 2.73
USP53-208ENST00000514305 MYO5CQ9NQX4 1742 aa32.07■■■□□ 2.72
USP53-208ENST00000514305 ADAMTSL3P82987 1691 aa32.06■■■□□ 2.72
USP53-208ENST00000514305 KIF14Q15058 1648 aa32.04■■■□□ 2.72
USP53-208ENST00000514305 ARID4BQ4LE39 1312 aaPredicted RBP32.04■■■□□ 2.72
USP53-208ENST00000514305 BCORL1Q5H9F3 1711 aa32.04■■■□□ 2.72
USP53-208ENST00000514305 PLCH2O75038 1416 aa32.04■■■□□ 2.72
USP53-208ENST00000514305 LRRIQ1Q96JM4 1722 aa32.03■■■□□ 2.72
USP53-208ENST00000514305 ZMYM4Q5VZL5 1548 aa32.01■■■□□ 2.72
USP53-208ENST00000514305 TROQ12816 1431 aaPredicted RBP31.98■■■□□ 2.71
USP53-208ENST00000514305 ZFYVE16Q7Z3T8 1539 aa31.96■■■□□ 2.71
USP53-208ENST00000514305 PTPRMP28827 1452 aa31.96■■■□□ 2.71
USP53-208ENST00000514305 PCF11O94913 1555 aaKnown RBP31.95■■■□□ 2.71
USP53-208ENST00000514305 SCAPERQ9BY12 1400 aa31.95■■■□□ 2.71
USP53-208ENST00000514305 DMRT2Q9Y5R5 561 aa31.95■■■□□ 2.71
USP53-208ENST00000514305 MADDQ8WXG6 1647 aa31.94■■■□□ 2.7
USP53-208ENST00000514305 MAGI2Q86UL8 1455 aa31.94■■■□□ 2.7
USP53-208ENST00000514305 EFCAB2Q5VUJ9 269 aa31.93■■■□□ 2.7
USP53-208ENST00000514305 POGZQ7Z3K3 1410 aa31.92■■■□□ 2.7
USP53-208ENST00000514305 CCDC18Q5T9S5 1454 aa31.92■■■□□ 2.7
USP53-208ENST00000514305 CASKIN1Q8WXD9 1431 aa31.92■■■□□ 2.7
USP53-208ENST00000514305 ARHGAP5Q13017 1502 aa31.89■■■□□ 2.7
USP53-208ENST00000514305 YEATS2Q9ULM3 1422 aa31.88■■■□□ 2.69
USP53-208ENST00000514305 RIMS1Q86UR5 1692 aaKnown RBP31.86■■■□□ 2.69
USP53-208ENST00000514305 PPP4R3CPQ6ZMV5 832 aa31.85■■■□□ 2.69
USP53-208ENST00000514305 FYCO1Q9BQS8 1478 aa31.83■■■□□ 2.69
USP53-208ENST00000514305 CDC42BPBQ9Y5S2 1711 aa31.81■■■□□ 2.68
USP53-208ENST00000514305 SIGLEC1Q9BZZ2 1709 aa31.8■■■□□ 2.68
USP53-208ENST00000514305 ZNF518AQ6AHZ1 1483 aa31.8■■■□□ 2.68
USP53-208ENST00000514305 PREX2Q70Z35 1606 aa31.78■■■□□ 2.68
USP53-208ENST00000514305 ATP10AO60312 1499 aa31.75■■■□□ 2.67
USP53-208ENST00000514305 FER1L4A9Z1Z3 1794 aa31.74■■■□□ 2.67
USP53-208ENST00000514305 C9orf84Q5VXU9 1444 aa31.74■■■□□ 2.67
USP53-208ENST00000514305 KDM5CP41229 1560 aa31.73■■■□□ 2.67
USP53-208ENST00000514305 VPS8Q8N3P4 1428 aa31.71■■■□□ 2.67
USP53-208ENST00000514305 CDC42BPAQ5VT25 1732 aa31.7■■■□□ 2.67
USP53-208ENST00000514305 MLECQ14165 292 aa31.7■■■□□ 2.67
USP53-208ENST00000514305 MYT1LQ9UL68 1186 aa31.69■■■□□ 2.66
USP53-208ENST00000514305 AFAP1Q8N556 730 aa31.68■■■□□ 2.66
USP53-208ENST00000514305 ABCC1P33527 1531 aa31.66■■■□□ 2.66
USP53-208ENST00000514305 ITSN2Q9NZM3 1697 aa31.66■■■□□ 2.66
USP53-208ENST00000514305 LMTK3Q96Q04 1460 aa31.63■■■□□ 2.65
USP53-208ENST00000514305 ILDR1Q86SU0 546 aaPredicted RBP31.62■■■□□ 2.65
USP53-208ENST00000514305 DIP2CQ9Y2E4 1556 aa31.61■■■□□ 2.65
USP53-208ENST00000514305 ARHGEF12Q9NZN5 1544 aa31.61■■■□□ 2.65
USP53-208ENST00000514305 APLP2Q06481 763 aa31.6■■■□□ 2.65
USP53-208ENST00000514305 MLH3Q9UHC1 1453 aa31.59■■■□□ 2.65
USP53-208ENST00000514305 ABCA6Q8N139 1617 aa31.58■■■□□ 2.65
USP53-208ENST00000514305 TRAPPC8Q9Y2L5 1435 aa31.57■■■□□ 2.64
USP53-208ENST00000514305 REREQ9P2R6 1566 aa31.56■■■□□ 2.64
USP53-208ENST00000514305 ZNF777Q9ULD5 760 aaPredicted RBP31.52■■■□□ 2.64
USP53-208ENST00000514305 MTUS2Q5JR59 1369 aa31.52■■■□□ 2.64
USP53-208ENST00000514305 SAMD9LQ8IVG5 1584 aa31.51■■■□□ 2.64
USP53-208ENST00000514305 GPATCH8Q9UKJ3 1502 aaKnown RBP31.51■■■□□ 2.63
USP53-208ENST00000514305 KIDINS220Q9ULH0 1771 aa31.5■■■□□ 2.63
USP53-208ENST00000514305 SYCP2Q9BX26 1530 aa31.48■■■□□ 2.63
USP53-208ENST00000514305 CCNB3Q8WWL7 1395 aa31.47■■■□□ 2.63
USP53-208ENST00000514305 PREX1Q8TCU6 1659 aa31.45■■■□□ 2.63
USP53-208ENST00000514305 AGLP35573 1532 aa31.44■■■□□ 2.62
USP53-208ENST00000514305 HSPA2P54652 639 aa31.43■■■□□ 2.62
USP53-208ENST00000514305 CFDP1Q9UEE9 299 aaPredicted RBP31.43■■■□□ 2.62
USP53-208ENST00000514305 PLEKHH2Q8IVE3 1493 aa31.43■■■□□ 2.62
USP53-208ENST00000514305 EHBP1L1Q8N3D4 1523 aa31.43■■■□□ 2.62
USP53-208ENST00000514305 MAP3K1Q13233 1512 aa31.39■■■□□ 2.62
USP53-208ENST00000514305 ESF1Q9H501 851 aaKnown RBP31.39■■■□□ 2.62
USP53-208ENST00000514305 CEBPAP49715 358 aaPredicted RBP31.38■■■□□ 2.61
USP53-208ENST00000514305 HNRNPMP52272 730 aaKnown RBP eCLIP31.38■■■□□ 2.61
USP53-208ENST00000514305 SPAG9O60271 1321 aaKnown RBP31.38■■■□□ 2.61
USP53-208ENST00000514305 KIAA1107Q9UPP5 1409 aa31.38■■■□□ 2.61
USP53-208ENST00000514305 TIAM1Q13009 1591 aa31.35■■■□□ 2.61
USP53-208ENST00000514305 C3P01024 1663 aa31.35■■■□□ 2.61
USP53-208ENST00000514305 ATP7AQ04656 1500 aa31.34■■■□□ 2.61
USP53-208ENST00000514305 SETD1BQ9UPS6 1966 aaKnown RBP31.34■■■□□ 2.61
USP53-208ENST00000514305 INO80Q9ULG1 1556 aaPredicted RBP31.32■■■□□ 2.6
USP53-208ENST00000514305 SUPT6HQ7KZ85 1726 aaKnown RBP31.31■■■□□ 2.6
USP53-208ENST00000514305 UHRF1BP1Q6BDS2 1440 aa31.29■■■□□ 2.6
USP53-208ENST00000514305 CNTLNQ9NXG0 1405 aa31.28■■■□□ 2.6
USP53-208ENST00000514305 FBXO41Q8TF61 875 aa31.26■■■□□ 2.59
USP53-208ENST00000514305 MROH2AA6NES4 1674 aa31.22■■■□□ 2.59
USP53-208ENST00000514305 ADGBQ8N7X0 1667 aa31.22■■■□□ 2.59
USP53-208ENST00000514305 PLXNC1O60486 1568 aa31.22■■■□□ 2.59
USP53-208ENST00000514305 A2MP01023 1474 aa31.22■■■□□ 2.59
USP53-208ENST00000514305 LRRC9Q6ZRR7 1453 aa31.21■■■□□ 2.59
USP53-208ENST00000514305 ZNF644Q9H582 1327 aaPredicted RBP31.21■■■□□ 2.59
USP53-208ENST00000514305 NCOA2Q15596 1464 aa31.19■■■□□ 2.58
USP53-208ENST00000514305 MBD5Q9P267 1494 aa31.16■■■□□ 2.58
USP53-208ENST00000514305 CLTCQ00610 1675 aaKnown RBP31.15■■■□□ 2.58
USP53-208ENST00000514305 STRCQ7RTU9 1775 aa31.15■■■□□ 2.58
USP53-208ENST00000514305 KANK4Q5T7N3 995 aaPredicted RBP31.14■■■□□ 2.58
USP53-208ENST00000514305 CNKSR2Q8WXI2 1034 aa31.12■■■□□ 2.57
USP53-208ENST00000514305 CAMSAP2Q08AD1 1489 aa31.12■■■□□ 2.57
USP53-208ENST00000514305 RTEL1-TNFRSF6BF6WH68 1400 aa31.11■■■□□ 2.57
USP53-208ENST00000514305 CCDC141Q6ZP82 1450 aa31.09■■■□□ 2.57
USP53-208ENST00000514305 NPATQ14207 1427 aa31.09■■■□□ 2.57
USP53-208ENST00000514305 ZMYM3Q14202 1370 aa31.09■■■□□ 2.57
USP53-208ENST00000514305 GGT6Q6P531 493 aa31.08■■■□□ 2.57
USP53-208ENST00000514305 RSPH4AQ5TD94 716 aa31.05■■■□□ 2.56
USP53-208ENST00000514305 CERKQ8TCT0 537 aa31.02■■■□□ 2.56
USP53-208ENST00000514305 DHX29Q7Z478 1369 aaKnown RBP31.01■■■□□ 2.55
USP53-208ENST00000514305 ARHGEF5Q12774 1597 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms