RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NISCHQ9Y2I1 1504 aa48.78■■■■■ 5.4
USP53-208ENST00000514305 AEBP2Q6ZN18 517 aaPredicted RBP47.34■■■■■ 5.17
USP53-208ENST00000514305 CHIC1Q5VXU3 224 aa45.2■■■■■ 4.83
USP53-208ENST00000514305 CCDC180Q9P1Z9 1646 aa43.8■■■■■ 4.6
USP53-208ENST00000514305 ABCC9O60706 1549 aa43.53■■■■■ 4.56
USP53-208ENST00000514305 RB1CC1Q8TDY2 1594 aa41.58■■■■■ 4.25
USP53-208ENST00000514305 NACADO15069 1562 aa41.32■■■■■ 4.2
USP53-208ENST00000514305 DCAF8L2P0C7V8 631 aa41.1■■■■■ 4.17
USP53-208ENST00000514305 MYO15BQ96JP2 1530 aa40.78■■■■■ 4.12
USP53-208ENST00000514305 UNC13AQ9UPW8 1703 aa40.66■■■■■ 4.1
USP53-208ENST00000514305 DNAJC5BQ9UF47 199 aa40.55■■■■■ 4.08
USP53-208ENST00000514305 PABPN1Q86U42 306 aaKnown RBP eCLIP40.5■■■■■ 4.07
USP53-208ENST00000514305 ZCCHC6Q5VYS8 1495 aaKnown RBP40.46■■■■■ 4.07
USP53-208ENST00000514305 DCAF1Q9Y4B6 1507 aa40.32■■■■■ 4.05
USP53-208ENST00000514305 BICRAQ9NZM4 1560 aa40.28■■■■■ 4.04
USP53-208ENST00000514305 SENP3Q9H4L4 574 aaPredicted RBP40.15■■■■■ 4.02
USP53-208ENST00000514305 SCRIBQ14160 1630 aa39.87■■■■□ 3.97
USP53-208ENST00000514305 SHROOM4Q9ULL8 1493 aa39.83■■■■□ 3.97
USP53-208ENST00000514305 PHF23Q9BUL5 403 aaPredicted RBP39.78■■■■□ 3.96
USP53-208ENST00000514305 CC2D2AQ9P2K1 1620 aa39.36■■■■□ 3.89
USP53-208ENST00000514305 EIF4G1Q04637 1599 aaKnown RBP39.32■■■■□ 3.88
USP53-208ENST00000514305 CECR2Q9BXF3 1484 aa39.2■■■■□ 3.87
USP53-208ENST00000514305 NCAPD3P42695 1498 aa38.08■■■■□ 3.69
USP53-208ENST00000514305 SMARCA4P51532 1647 aa38.05■■■■□ 3.68
USP53-208ENST00000514305 ATAD2BQ9ULI0 1458 aa37.99■■■■□ 3.67
USP53-208ENST00000514305 SMARCA2P51531 1590 aa37.97■■■■□ 3.67
USP53-208ENST00000514305 BAZ1AQ9NRL2 1556 aaPredicted RBP37.9■■■■□ 3.66
USP53-208ENST00000514305 HMGXB3Q12766 1538 aa37.87■■■■□ 3.65
USP53-208ENST00000514305 BAZ1BQ9UIG0 1483 aaKnown RBP37.69■■■■□ 3.62
USP53-208ENST00000514305 PEG3Q9GZU2 1588 aa37.67■■■■□ 3.62
USP53-208ENST00000514305 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
USP53-208ENST00000514305 MROH2BQ7Z745 1585 aa37.57■■■■□ 3.6
USP53-208ENST00000514305 FOXD1Q16676 465 aa37.51■■■■□ 3.6
USP53-208ENST00000514305 CUX2O14529 1486 aa37.48■■■■□ 3.59
USP53-208ENST00000514305 NESP48681 1621 aa37.42■■■■□ 3.58
USP53-208ENST00000514305 LAMC3Q9Y6N6 1575 aa37.28■■■■□ 3.56
USP53-208ENST00000514305 DNAJC5Q9H3Z4 198 aa37.18■■■■□ 3.54
USP53-208ENST00000514305 WIZO95785 1651 aa37.18■■■■□ 3.54
USP53-208ENST00000514305 THOC2Q8NI27 1593 aaKnown RBP37.06■■■■□ 3.52
USP53-208ENST00000514305 KIF21AQ7Z4S6 1674 aa37.04■■■■□ 3.52
USP53-208ENST00000514305 PDS5BQ9NTI5 1447 aa37.02■■■■□ 3.52
USP53-208ENST00000514305 CADPSQ9ULU8 1353 aa36.93■■■■□ 3.5
USP53-208ENST00000514305 RSF1Q96T23 1441 aaPredicted RBP36.84■■■■□ 3.49
USP53-208ENST00000514305 TOP2AP11388 1531 aaKnown RBP36.72■■■■□ 3.47
USP53-208ENST00000514305 MRC2Q9UBG0 1479 aa36.69■■■■□ 3.46
USP53-208ENST00000514305 CEP164Q9UPV0 1460 aa36.6■■■■□ 3.45
USP53-208ENST00000514305 WDR62O43379 1518 aa36.59■■■■□ 3.45
USP53-208ENST00000514305 CFTRP13569 1480 aa36.56■■■■□ 3.44
USP53-208ENST00000514305 FANCD2Q9BXW9 1451 aa36.55■■■■□ 3.44
USP53-208ENST00000514305 PRDM2Q13029 1718 aa36.36■■■■□ 3.41
USP53-208ENST00000514305 CCDC88BA6NC98 1476 aa36.25■■■■□ 3.39
USP53-208ENST00000514305 PLPPR3Q6T4P5 718 aa36.21■■■■□ 3.39
USP53-208ENST00000514305 URB2Q14146 1524 aaKnown RBP36.2■■■■□ 3.39
USP53-208ENST00000514305 SUPT5HO00267 1087 aaKnown RBP35.88■■■■□ 3.33
USP53-208ENST00000514305 TOPBP1Q92547 1522 aa35.87■■■■□ 3.33
USP53-208ENST00000514305 ABCC8Q09428 1581 aa35.85■■■■□ 3.33
USP53-208ENST00000514305 IFT140Q96RY7 1462 aa35.84■■■■□ 3.33
USP53-208ENST00000514305 DNMBPQ6XZF7 1577 aa35.79■■■■□ 3.32
USP53-208ENST00000514305 OSCARQ8IYS5 282 aa35.77■■■■□ 3.32
USP53-208ENST00000514305 ZNF608Q9ULD9 1512 aaPredicted RBP35.72■■■■□ 3.31
USP53-208ENST00000514305 TRIM41Q8WV44 630 aa35.67■■■■□ 3.3
USP53-208ENST00000514305 EIF4G3O43432 1585 aaKnown RBP35.61■■■■□ 3.29
USP53-208ENST00000514305 TARBP1Q13395 1621 aaKnown RBP35.54■■■■□ 3.28
USP53-208ENST00000514305 POLA1P09884 1462 aaPredicted RBP35.5■■■■□ 3.27
USP53-208ENST00000514305 AQRO60306 1485 aaKnown RBP eCLIP35.41■■■■□ 3.26
USP53-208ENST00000514305 PPP6R1Q9UPN7 881 aa35.4■■■■□ 3.26
USP53-208ENST00000514305 SOGA1O94964 1423 aa35.35■■■■□ 3.25
USP53-208ENST00000514305 RAD54L2Q9Y4B4 1467 aa35.35■■■■□ 3.25
USP53-208ENST00000514305 CHD1O14646 1710 aa35.35■■■■□ 3.25
USP53-208ENST00000514305 FGD5Q6ZNL6 1462 aa35.32■■■■□ 3.24
USP53-208ENST00000514305 RIMBP3CA6NJZ7 1639 aa35.32■■■■□ 3.24
USP53-208ENST00000514305 RIMBP3BA6NNM3 1639 aa35.32■■■■□ 3.24
USP53-208ENST00000514305 RIMBP3Q9UFD9 1639 aa35.32■■■■□ 3.24
USP53-208ENST00000514305 CUX1P39880 1505 aa35.3■■■■□ 3.24
USP53-208ENST00000514305 ADRA2BP18089 450 aa35.28■■■■□ 3.24
USP53-208ENST00000514305 WDR97A6NE52 1622 aa35.27■■■■□ 3.24
USP53-208ENST00000514305 TDRD9Q8NDG6 1382 aaKnown RBP35.24■■■■□ 3.23
USP53-208ENST00000514305 ARHGEF11O15085 1522 aa35.21■■■■□ 3.23
USP53-208ENST00000514305 FBLN2P98095 1184 aa35.2■■■■□ 3.23
USP53-208ENST00000514305 SNAPC4Q5SXM2 1469 aa35.1■■■■□ 3.21
USP53-208ENST00000514305 PIAS4Q8N2W9 510 aaPredicted RBP35.05■■■■□ 3.2
USP53-208ENST00000514305 GRIN2BQ13224 1484 aa35.04■■■■□ 3.2
USP53-208ENST00000514305 MAGI1Q96QZ7 1491 aaPredicted RBP35.04■■■■□ 3.2
USP53-208ENST00000514305 PBRM1Q86U86 1689 aa34.99■■■■□ 3.19
USP53-208ENST00000514305 CHMP7Q8WUX9 453 aaPredicted RBP34.97■■■■□ 3.19
USP53-208ENST00000514305 GAPVD1Q14C86 1478 aa34.94■■■■□ 3.18
USP53-208ENST00000514305 SYNJ1O43426 1573 aa34.93■■■■□ 3.18
USP53-208ENST00000514305 ABCA10Q8WWZ4 1543 aa34.93■■■■□ 3.18
USP53-208ENST00000514305 SYNJ2O15056 1496 aa34.91■■■■□ 3.18
USP53-208ENST00000514305 CYB5RLQ6IPT4 315 aa34.9■■■■□ 3.18
USP53-208ENST00000514305 ABCA5Q8WWZ7 1642 aa34.88■■■■□ 3.17
USP53-208ENST00000514305 CLASP1Q7Z460 1538 aa34.87■■■■□ 3.17
USP53-208ENST00000514305 ARAP1Q96P48 1450 aa34.85■■■■□ 3.17
USP53-208ENST00000514305 BIVM-ERCC5R4GMW8 1640 aa34.84■■■■□ 3.17
USP53-208ENST00000514305 WRNQ14191 1432 aaPredicted RBP eCLIP34.84■■■■□ 3.17
USP53-208ENST00000514305 MSH5O43196 834 aa34.83■■■■□ 3.17
USP53-208ENST00000514305 TOP2BQ02880 1626 aa34.83■■■■□ 3.17
USP53-208ENST00000514305 ADAMTS12P58397 1594 aa34.62■■■■□ 3.13
USP53-208ENST00000514305 GRIN2AQ12879 1464 aa34.58■■■■□ 3.13
USP53-208ENST00000514305 ERICH3Q5RHP9 1530 aa34.52■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms