RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 HECW1Q76N89 1606 aa16.03■□□□□ 0.16
NEDD9-211ENST00000508546 MED1Q15648 1581 aaPredicted RBP16.03■□□□□ 0.16
NEDD9-211ENST00000508546 NUP153P49790 1475 aaKnown RBP16.03■□□□□ 0.16
NEDD9-211ENST00000508546 UHRF1BP1Q6BDS2 1440 aa16.02■□□□□ 0.16
NEDD9-211ENST00000508546 DMRT2Q9Y5R5 561 aa16.02■□□□□ 0.16
NEDD9-211ENST00000508546 MAGI2Q86UL8 1455 aa15.99■□□□□ 0.15
NEDD9-211ENST00000508546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
NEDD9-211ENST00000508546 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
NEDD9-211ENST00000508546 CEBPAP49715 358 aaPredicted RBP15.98■□□□□ 0.15
NEDD9-211ENST00000508546 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
NEDD9-211ENST00000508546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.95■□□□□ 0.14
NEDD9-211ENST00000508546 PLEKHD1A6NEE1 506 aa15.95■□□□□ 0.14
NEDD9-211ENST00000508546 C3P01024 1663 aa15.95■□□□□ 0.14
NEDD9-211ENST00000508546 C9orf84Q5VXU9 1444 aa15.94■□□□□ 0.14
NEDD9-211ENST00000508546 NCOA1Q15788 1441 aa15.94■□□□□ 0.14
NEDD9-211ENST00000508546 SETD1BQ9UPS6 1966 aaKnown RBP15.93■□□□□ 0.14
NEDD9-211ENST00000508546 ATP10AO60312 1499 aa15.91■□□□□ 0.14
NEDD9-211ENST00000508546 EEA1Q15075 1411 aa15.9■□□□□ 0.14
NEDD9-211ENST00000508546 UBAP1LF5GYI3 381 aa15.87■□□□□ 0.13
NEDD9-211ENST00000508546 CAMSAP1Q5T5Y3 1602 aa15.85■□□□□ 0.13
NEDD9-211ENST00000508546 SCAPERQ9BY12 1400 aa15.85■□□□□ 0.13
NEDD9-211ENST00000508546 RANGAP1P46060 587 aaPredicted RBP15.84■□□□□ 0.13
NEDD9-211ENST00000508546 ZNF335Q9H4Z2 1342 aaPredicted RBP15.84■□□□□ 0.13
NEDD9-211ENST00000508546 PLCH2O75038 1416 aa15.84■□□□□ 0.13
NEDD9-211ENST00000508546 DIP2CQ9Y2E4 1556 aa15.83■□□□□ 0.13
NEDD9-211ENST00000508546 CDK13Q14004 1512 aaKnown RBP15.83■□□□□ 0.12
NEDD9-211ENST00000508546 MYO5CQ9NQX4 1742 aa15.82■□□□□ 0.12
NEDD9-211ENST00000508546 KDM5CP41229 1560 aa15.81■□□□□ 0.12
NEDD9-211ENST00000508546 REREQ9P2R6 1566 aa15.81■□□□□ 0.12
NEDD9-211ENST00000508546 ABCA6Q8N139 1617 aa15.8■□□□□ 0.12
NEDD9-211ENST00000508546 HSPA1LP34931 641 aa15.79■□□□□ 0.12
NEDD9-211ENST00000508546 TRAPPC8Q9Y2L5 1435 aa15.78■□□□□ 0.12
NEDD9-211ENST00000508546 ZNF142P52746 1687 aaPredicted RBP15.76■□□□□ 0.11
NEDD9-211ENST00000508546 EFCAB2Q5VUJ9 269 aa15.76■□□□□ 0.11
NEDD9-211ENST00000508546 ZNF518AQ6AHZ1 1483 aa15.75■□□□□ 0.11
NEDD9-211ENST00000508546 AGLP35573 1532 aa15.74■□□□□ 0.11
NEDD9-211ENST00000508546 MYO3AQ8NEV4 1616 aa15.74■□□□□ 0.11
NEDD9-211ENST00000508546 KIF14Q15058 1648 aa15.73■□□□□ 0.11
NEDD9-211ENST00000508546 PHF23Q9BUL5 403 aaPredicted RBP15.73■□□□□ 0.11
NEDD9-211ENST00000508546 FMN1Q68DA7 1419 aa15.73■□□□□ 0.11
NEDD9-211ENST00000508546 SUPT6HQ7KZ85 1726 aaKnown RBP15.72■□□□□ 0.11
NEDD9-211ENST00000508546 PLA2R1Q13018 1463 aa15.71■□□□□ 0.11
NEDD9-211ENST00000508546 SCAF1Q9H7N4 1312 aaKnown RBP15.71■□□□□ 0.11
NEDD9-211ENST00000508546 NCKAP5LQ9HCH0 1330 aa15.71■□□□□ 0.11
NEDD9-211ENST00000508546 MROH2AA6NES4 1674 aa15.71■□□□□ 0.11
NEDD9-211ENST00000508546 CDK11AQ9UQ88 783 aaPredicted RBP15.71■□□□□ 0.11
NEDD9-211ENST00000508546 TCOF1Q13428 1488 aaKnown RBP15.71■□□□□ 0.1
NEDD9-211ENST00000508546 NPATQ14207 1427 aa15.69■□□□□ 0.1
NEDD9-211ENST00000508546 ALKQ9UM73 1620 aa15.69■□□□□ 0.1
NEDD9-211ENST00000508546 CDC42BPBQ9Y5S2 1711 aa15.69■□□□□ 0.1
NEDD9-211ENST00000508546 TROQ12816 1431 aaPredicted RBP15.68■□□□□ 0.1
NEDD9-211ENST00000508546 ARHGAP5Q13017 1502 aa15.68■□□□□ 0.1
NEDD9-211ENST00000508546 LRRIQ1Q96JM4 1722 aa15.68■□□□□ 0.1
NEDD9-211ENST00000508546 CEP170BQ9Y4F5 1589 aaPredicted RBP15.68■□□□□ 0.1
NEDD9-211ENST00000508546 PIP4K2BP78356 416 aa15.68■□□□□ 0.1
NEDD9-211ENST00000508546 CNTLNQ9NXG0 1405 aa15.68■□□□□ 0.1
NEDD9-211ENST00000508546 ARHGAP35Q9NRY4 1499 aa15.67■□□□□ 0.1
NEDD9-211ENST00000508546 AFAP1Q8N556 730 aa15.67■□□□□ 0.1
NEDD9-211ENST00000508546 MLH3Q9UHC1 1453 aa15.66■□□□□ 0.1
NEDD9-211ENST00000508546 CLIP1P30622 1438 aa15.66■□□□□ 0.1
NEDD9-211ENST00000508546 ATP1B4Q9UN42 357 aaPredicted RBP15.65■□□□□ 0.1
NEDD9-211ENST00000508546 PREX2Q70Z35 1606 aa15.64■□□□□ 0.09
NEDD9-211ENST00000508546 CPS1P31327 1500 aa15.63■□□□□ 0.09
NEDD9-211ENST00000508546 ITSN2Q9NZM3 1697 aa15.63■□□□□ 0.09
NEDD9-211ENST00000508546 ABCC1P33527 1531 aa15.62■□□□□ 0.09
NEDD9-211ENST00000508546 KIDINS220Q9ULH0 1771 aa15.62■□□□□ 0.09
NEDD9-211ENST00000508546 POLR1AO95602 1720 aaPredicted RBP15.61■□□□□ 0.09
NEDD9-211ENST00000508546 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
NEDD9-211ENST00000508546 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
NEDD9-211ENST00000508546 MYT1LQ9UL68 1186 aa15.61■□□□□ 0.09
NEDD9-211ENST00000508546 NEURL4Q96JN8 1562 aa15.61■□□□□ 0.09
NEDD9-211ENST00000508546 PKD2Q13563 968 aa15.6■□□□□ 0.09
NEDD9-211ENST00000508546 PPP6R1Q9UPN7 881 aa15.6■□□□□ 0.09
NEDD9-211ENST00000508546 CLTCQ00610 1675 aaKnown RBP15.6■□□□□ 0.09
NEDD9-211ENST00000508546 SETD1AO15047 1707 aaKnown RBP15.58■□□□□ 0.08
NEDD9-211ENST00000508546 CDC42BPAQ5VT25 1732 aa15.58■□□□□ 0.08
NEDD9-211ENST00000508546 TOM1O60784 492 aa15.57■□□□□ 0.08
NEDD9-211ENST00000508546 RGS17Q9UGC6 210 aaPredicted RBP15.57■□□□□ 0.08
NEDD9-211ENST00000508546 ZMYM3Q14202 1370 aa15.56■□□□□ 0.08
NEDD9-211ENST00000508546 SHANK2Q9UPX8 1470 aa15.56■□□□□ 0.08
NEDD9-211ENST00000508546 VWDEQ8N2E2 1590 aa15.56■□□□□ 0.08
NEDD9-211ENST00000508546 CCDC18Q5T9S5 1454 aa15.55■□□□□ 0.08
NEDD9-211ENST00000508546 PTPRKQ15262 1439 aa15.55■□□□□ 0.08
NEDD9-211ENST00000508546 DNMT1P26358 1616 aaKnown RBP15.54■□□□□ 0.08
NEDD9-211ENST00000508546 CASKIN1Q8WXD9 1431 aa15.52■□□□□ 0.08
NEDD9-211ENST00000508546 EHMT2Q96KQ7 1210 aa15.52■□□□□ 0.08
NEDD9-211ENST00000508546 RNF17Q9BXT8 1623 aaKnown RBP15.52■□□□□ 0.08
NEDD9-211ENST00000508546 SAMD9LQ8IVG5 1584 aa15.52■□□□□ 0.07
NEDD9-211ENST00000508546 SENP3Q9H4L4 574 aaPredicted RBP15.51■□□□□ 0.07
NEDD9-211ENST00000508546 A2ML1A8K2U0 1454 aa15.51■□□□□ 0.07
NEDD9-211ENST00000508546 PLXNC1O60486 1568 aa15.5■□□□□ 0.07
NEDD9-211ENST00000508546 STRCP1A6NGW2 1772 aa15.48■□□□□ 0.07
NEDD9-211ENST00000508546 SYCP2Q9BX26 1530 aa15.47■□□□□ 0.07
NEDD9-211ENST00000508546 SYNMO15061 1565 aa15.46■□□□□ 0.07
NEDD9-211ENST00000508546 FYCO1Q9BQS8 1478 aa15.46■□□□□ 0.06
NEDD9-211ENST00000508546 ATP7AQ04656 1500 aa15.45■□□□□ 0.06
NEDD9-211ENST00000508546 INO80Q9ULG1 1556 aaPredicted RBP15.45■□□□□ 0.06
NEDD9-211ENST00000508546 SPAG9O60271 1321 aaKnown RBP15.44■□□□□ 0.06
NEDD9-211ENST00000508546 GPATCH8Q9UKJ3 1502 aaKnown RBP15.44■□□□□ 0.06
NEDD9-211ENST00000508546 KIAA1107Q9UPP5 1409 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms