RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 NISCHQ9Y2I1 1504 aa24.07■■□□□ 1.44
NEDD9-211ENST00000508546 ABCC9O60706 1549 aa22.61■■□□□ 1.21
NEDD9-211ENST00000508546 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
NEDD9-211ENST00000508546 DNAJC5BQ9UF47 199 aa21.85■■□□□ 1.09
NEDD9-211ENST00000508546 RB1CC1Q8TDY2 1594 aa21.15■□□□□ 0.98
NEDD9-211ENST00000508546 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.93
NEDD9-211ENST00000508546 NACADO15069 1562 aa20.8■□□□□ 0.92
NEDD9-211ENST00000508546 UNC13AQ9UPW8 1703 aa20.8■□□□□ 0.92
NEDD9-211ENST00000508546 BICRAQ9NZM4 1560 aa20.64■□□□□ 0.9
NEDD9-211ENST00000508546 DNAJC5Q9H3Z4 198 aa20.59■□□□□ 0.89
NEDD9-211ENST00000508546 CECR2Q9BXF3 1484 aa20.43■□□□□ 0.86
NEDD9-211ENST00000508546 CC2D2AQ9P2K1 1620 aa20.41■□□□□ 0.86
NEDD9-211ENST00000508546 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.85
NEDD9-211ENST00000508546 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
NEDD9-211ENST00000508546 SHROOM4Q9ULL8 1493 aa20.22■□□□□ 0.83
NEDD9-211ENST00000508546 EIF4G1Q04637 1599 aaKnown RBP20.17■□□□□ 0.82
NEDD9-211ENST00000508546 DCAF1Q9Y4B6 1507 aa19.91■□□□□ 0.78
NEDD9-211ENST00000508546 SCRIBQ14160 1630 aa19.9■□□□□ 0.78
NEDD9-211ENST00000508546 ZCCHC6Q5VYS8 1495 aaKnown RBP19.88■□□□□ 0.77
NEDD9-211ENST00000508546 CUX2O14529 1486 aa19.79■□□□□ 0.76
NEDD9-211ENST00000508546 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
NEDD9-211ENST00000508546 TRIM41Q8WV44 630 aa19.37■□□□□ 0.69
NEDD9-211ENST00000508546 THOC2Q8NI27 1593 aaKnown RBP19.26■□□□□ 0.67
NEDD9-211ENST00000508546 NESP48681 1621 aa19.22■□□□□ 0.67
NEDD9-211ENST00000508546 NCAPD3P42695 1498 aa19.18■□□□□ 0.66
NEDD9-211ENST00000508546 SMARCA2P51531 1590 aa19.06■□□□□ 0.64
NEDD9-211ENST00000508546 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
NEDD9-211ENST00000508546 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
NEDD9-211ENST00000508546 KIF21AQ7Z4S6 1674 aa19■□□□□ 0.63
NEDD9-211ENST00000508546 LAMC3Q9Y6N6 1575 aa18.93■□□□□ 0.62
NEDD9-211ENST00000508546 SMARCA4P51532 1647 aa18.89■□□□□ 0.61
NEDD9-211ENST00000508546 BAZ1AQ9NRL2 1556 aaPredicted RBP18.88■□□□□ 0.61
NEDD9-211ENST00000508546 BAZ1BQ9UIG0 1483 aaKnown RBP18.82■□□□□ 0.6
NEDD9-211ENST00000508546 PDS5BQ9NTI5 1447 aa18.76■□□□□ 0.59
NEDD9-211ENST00000508546 WDR62O43379 1518 aa18.76■□□□□ 0.59
NEDD9-211ENST00000508546 MRC2Q9UBG0 1479 aa18.74■□□□□ 0.59
NEDD9-211ENST00000508546 PEG3Q9GZU2 1588 aa18.69■□□□□ 0.58
NEDD9-211ENST00000508546 RIMBP3CA6NJZ7 1639 aa18.66■□□□□ 0.58
NEDD9-211ENST00000508546 RIMBP3BA6NNM3 1639 aa18.66■□□□□ 0.58
NEDD9-211ENST00000508546 RIMBP3Q9UFD9 1639 aa18.66■□□□□ 0.58
NEDD9-211ENST00000508546 OSCARQ8IYS5 282 aa18.6■□□□□ 0.57
NEDD9-211ENST00000508546 CADPSQ9ULU8 1353 aa18.54■□□□□ 0.56
NEDD9-211ENST00000508546 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
NEDD9-211ENST00000508546 ARHGEF11O15085 1522 aa18.5■□□□□ 0.55
NEDD9-211ENST00000508546 CEP164Q9UPV0 1460 aa18.49■□□□□ 0.55
NEDD9-211ENST00000508546 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.53
NEDD9-211ENST00000508546 URB2Q14146 1524 aaKnown RBP18.33■□□□□ 0.53
NEDD9-211ENST00000508546 AEBP2Q6ZN18 517 aaPredicted RBP18.32■□□□□ 0.52
NEDD9-211ENST00000508546 WIZO95785 1651 aa18.3■□□□□ 0.52
NEDD9-211ENST00000508546 TRHP20396 242 aaPredicted RBP18.29■□□□□ 0.52
NEDD9-211ENST00000508546 ARAP1Q96P48 1450 aa18.28■□□□□ 0.52
NEDD9-211ENST00000508546 CYB5RLQ6IPT4 315 aa18.25■□□□□ 0.51
NEDD9-211ENST00000508546 ZNF608Q9ULD9 1512 aaPredicted RBP18.23■□□□□ 0.51
NEDD9-211ENST00000508546 CFTRP13569 1480 aa18.21■□□□□ 0.51
NEDD9-211ENST00000508546 CHD1O14646 1710 aa18.17■□□□□ 0.5
NEDD9-211ENST00000508546 EIF4G3O43432 1585 aaKnown RBP18.15■□□□□ 0.5
NEDD9-211ENST00000508546 IFT140Q96RY7 1462 aa18.13■□□□□ 0.49
NEDD9-211ENST00000508546 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
NEDD9-211ENST00000508546 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
NEDD9-211ENST00000508546 TOP2AP11388 1531 aaKnown RBP18.05■□□□□ 0.48
NEDD9-211ENST00000508546 TOPBP1Q92547 1522 aa17.97■□□□□ 0.47
NEDD9-211ENST00000508546 CLASP1Q7Z460 1538 aa17.92■□□□□ 0.46
NEDD9-211ENST00000508546 TARBP1Q13395 1621 aaKnown RBP17.91■□□□□ 0.46
NEDD9-211ENST00000508546 AQRO60306 1485 aaKnown RBP eCLIP17.9■□□□□ 0.463e-8■■■□□ 16.2
NEDD9-211ENST00000508546 DNMBPQ6XZF7 1577 aa17.85■□□□□ 0.45
NEDD9-211ENST00000508546 FBLN2P98095 1184 aa17.84■□□□□ 0.45
NEDD9-211ENST00000508546 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
NEDD9-211ENST00000508546 ABCC8Q09428 1581 aa17.81■□□□□ 0.44
NEDD9-211ENST00000508546 SYNJ1O43426 1573 aa17.77■□□□□ 0.44
NEDD9-211ENST00000508546 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
NEDD9-211ENST00000508546 ILDR1Q86SU0 546 aaPredicted RBP17.74■□□□□ 0.43
NEDD9-211ENST00000508546 POLA1P09884 1462 aaPredicted RBP17.74■□□□□ 0.43
NEDD9-211ENST00000508546 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
NEDD9-211ENST00000508546 RAD54L2Q9Y4B4 1467 aa17.68■□□□□ 0.42
NEDD9-211ENST00000508546 MAGI1Q96QZ7 1491 aaPredicted RBP17.64■□□□□ 0.41
NEDD9-211ENST00000508546 WDR97A6NE52 1622 aa17.64■□□□□ 0.41
NEDD9-211ENST00000508546 TDRD9Q8NDG6 1382 aaKnown RBP17.64■□□□□ 0.41
NEDD9-211ENST00000508546 KIF13AQ9H1H9 1805 aa17.63■□□□□ 0.41
NEDD9-211ENST00000508546 ERCC6L2Q5T890 1561 aa17.59■□□□□ 0.41
NEDD9-211ENST00000508546 SYNJ2O15056 1496 aa17.59■□□□□ 0.41
NEDD9-211ENST00000508546 CHMP7Q8WUX9 453 aaPredicted RBP17.57■□□□□ 0.4
NEDD9-211ENST00000508546 SOGA1O94964 1423 aa17.55■□□□□ 0.4
NEDD9-211ENST00000508546 GRIN2BQ13224 1484 aa17.54■□□□□ 0.4
NEDD9-211ENST00000508546 PBRM1Q86U86 1689 aa17.53■□□□□ 0.4
NEDD9-211ENST00000508546 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
NEDD9-211ENST00000508546 KDM4FA0A1W2PPD8 638 aa17.46■□□□□ 0.39
NEDD9-211ENST00000508546 CEP170Q5SW79 1584 aa17.45■□□□□ 0.38
NEDD9-211ENST00000508546 CUX1P39880 1505 aa17.42■□□□□ 0.38
NEDD9-211ENST00000508546 SHROOM2Q13796 1616 aa17.39■□□□□ 0.37
NEDD9-211ENST00000508546 ABCA5Q8WWZ7 1642 aa17.38■□□□□ 0.37
NEDD9-211ENST00000508546 KDM6BO15054 1643 aa17.37■□□□□ 0.37
NEDD9-211ENST00000508546 GRIN2AQ12879 1464 aa17.35■□□□□ 0.37
NEDD9-211ENST00000508546 DIP2BQ9P265 1576 aa17.35■□□□□ 0.37
NEDD9-211ENST00000508546 ABCC10Q5T3U5 1492 aa17.33■□□□□ 0.37
NEDD9-211ENST00000508546 NUP160Q12769 1436 aa17.32■□□□□ 0.36
NEDD9-211ENST00000508546 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
NEDD9-211ENST00000508546 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
NEDD9-211ENST00000508546 HECW2Q9P2P5 1572 aa17.28■□□□□ 0.36
NEDD9-211ENST00000508546 MAPKBP1O60336 1514 aa17.27■□□□□ 0.36
NEDD9-211ENST00000508546 FAM69CQ0P6D2 419 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms