RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ZFYVE16Q7Z3T8 1539 aa21.3■■□□□ 1
HMGCS1-205ENST00000508319 MADDQ8WXG6 1647 aa21.3■■□□□ 1
HMGCS1-205ENST00000508319 SIGLEC1Q9BZZ2 1709 aa21.29■■□□□ 1
HMGCS1-205ENST00000508319 PTPRMP28827 1452 aa21.29■■□□□ 1
HMGCS1-205ENST00000508319 CCDC18Q5T9S5 1454 aa21.29■■□□□ 1
HMGCS1-205ENST00000508319 CLIP1P30622 1438 aa21.29■■□□□ 1
HMGCS1-205ENST00000508319 YEATS2Q9ULM3 1422 aa21.29■■□□□ 1
HMGCS1-205ENST00000508319 MAGI2Q86UL8 1455 aa21.28■■□□□ 1
HMGCS1-205ENST00000508319 SCAPERQ9BY12 1400 aa21.28■■□□□ 1
HMGCS1-205ENST00000508319 FYCO1Q9BQS8 1478 aa21.26■□□□□ 0.99
HMGCS1-205ENST00000508319 ARHGAP5Q13017 1502 aa21.24■□□□□ 0.99
HMGCS1-205ENST00000508319 CDC42BPBQ9Y5S2 1711 aa21.24■□□□□ 0.99
HMGCS1-205ENST00000508319 ARID4BQ4LE39 1312 aaPredicted RBP21.24■□□□□ 0.99
HMGCS1-205ENST00000508319 PREX2Q70Z35 1606 aa21.23■□□□□ 0.99
HMGCS1-205ENST00000508319 EFCAB2Q5VUJ9 269 aa21.23■□□□□ 0.99
HMGCS1-205ENST00000508319 RIMS1Q86UR5 1692 aaKnown RBP21.21■□□□□ 0.99
HMGCS1-205ENST00000508319 KDM5CP41229 1560 aa21.21■□□□□ 0.99
HMGCS1-205ENST00000508319 ZNF518AQ6AHZ1 1483 aa21.19■□□□□ 0.98
HMGCS1-205ENST00000508319 CDC42BPAQ5VT25 1732 aa21.18■□□□□ 0.98
HMGCS1-205ENST00000508319 ABCC1P33527 1531 aa21.16■□□□□ 0.98
HMGCS1-205ENST00000508319 ATP10AO60312 1499 aa21.14■□□□□ 0.98
HMGCS1-205ENST00000508319 C9orf84Q5VXU9 1444 aa21.14■□□□□ 0.98
HMGCS1-205ENST00000508319 FER1L4A9Z1Z3 1794 aa21.14■□□□□ 0.97
HMGCS1-205ENST00000508319 ITSN2Q9NZM3 1697 aa21.14■□□□□ 0.97
HMGCS1-205ENST00000508319 DIP2CQ9Y2E4 1556 aa21.11■□□□□ 0.97
HMGCS1-205ENST00000508319 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
HMGCS1-205ENST00000508319 LMTK3Q96Q04 1460 aa21.1■□□□□ 0.97
HMGCS1-205ENST00000508319 ABCA6Q8N139 1617 aa21.1■□□□□ 0.97
HMGCS1-205ENST00000508319 AFAP1Q8N556 730 aa21.09■□□□□ 0.97
HMGCS1-205ENST00000508319 REREQ9P2R6 1566 aa21.08■□□□□ 0.97
HMGCS1-205ENST00000508319 TRAPPC8Q9Y2L5 1435 aa21.08■□□□□ 0.97
HMGCS1-205ENST00000508319 MLH3Q9UHC1 1453 aa21.07■□□□□ 0.96
HMGCS1-205ENST00000508319 SAMD9LQ8IVG5 1584 aa21.06■□□□□ 0.96
HMGCS1-205ENST00000508319 CEP162Q5TB80 1403 aa21.05■□□□□ 0.96
HMGCS1-205ENST00000508319 GPATCH8Q9UKJ3 1502 aaKnown RBP21.05■□□□□ 0.96
HMGCS1-205ENST00000508319 MLECQ14165 292 aa21.05■□□□□ 0.96
HMGCS1-205ENST00000508319 KIDINS220Q9ULH0 1771 aa21.03■□□□□ 0.96
HMGCS1-205ENST00000508319 SYCP2Q9BX26 1530 aa21.02■□□□□ 0.96
HMGCS1-205ENST00000508319 EHBP1L1Q8N3D4 1523 aa20.99■□□□□ 0.95
HMGCS1-205ENST00000508319 AGLP35573 1532 aa20.99■□□□□ 0.95
HMGCS1-205ENST00000508319 MTUS2Q5JR59 1369 aa20.98■□□□□ 0.95
HMGCS1-205ENST00000508319 ILDR1Q86SU0 546 aaPredicted RBP20.98■□□□□ 0.95
HMGCS1-205ENST00000508319 MYT1LQ9UL68 1186 aa20.97■□□□□ 0.95
HMGCS1-205ENST00000508319 TIAM1Q13009 1591 aa20.97■□□□□ 0.95
HMGCS1-205ENST00000508319 PLPPR3Q6T4P5 718 aa20.96■□□□□ 0.95
HMGCS1-205ENST00000508319 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
HMGCS1-205ENST00000508319 ZNF777Q9ULD5 760 aaPredicted RBP20.94■□□□□ 0.94
HMGCS1-205ENST00000508319 KIAA1107Q9UPP5 1409 aa20.94■□□□□ 0.94
HMGCS1-205ENST00000508319 PLEKHH2Q8IVE3 1493 aa20.94■□□□□ 0.94
HMGCS1-205ENST00000508319 INO80Q9ULG1 1556 aaPredicted RBP20.93■□□□□ 0.94
HMGCS1-205ENST00000508319 PREX1Q8TCU6 1659 aa20.93■□□□□ 0.94
HMGCS1-205ENST00000508319 ATP7AQ04656 1500 aa20.92■□□□□ 0.94
HMGCS1-205ENST00000508319 CFDP1Q9UEE9 299 aaPredicted RBP20.91■□□□□ 0.94
HMGCS1-205ENST00000508319 HSPA2P54652 639 aa20.9■□□□□ 0.94
HMGCS1-205ENST00000508319 C3P01024 1663 aa20.89■□□□□ 0.94
HMGCS1-205ENST00000508319 PLXNC1O60486 1568 aa20.89■□□□□ 0.93
HMGCS1-205ENST00000508319 HNRNPMP52272 730 aaKnown RBP eCLIP20.88■□□□□ 0.93
HMGCS1-205ENST00000508319 SPAG9O60271 1321 aaKnown RBP20.87■□□□□ 0.93
HMGCS1-205ENST00000508319 CEBPAP49715 358 aaPredicted RBP20.87■□□□□ 0.93
HMGCS1-205ENST00000508319 SUPT6HQ7KZ85 1726 aaKnown RBP20.85■□□□□ 0.93
HMGCS1-205ENST00000508319 MBD5Q9P267 1494 aa20.84■□□□□ 0.93
HMGCS1-205ENST00000508319 VPS8Q8N3P4 1428 aa20.84■□□□□ 0.93
HMGCS1-205ENST00000508319 SETD1BQ9UPS6 1966 aaKnown RBP20.83■□□□□ 0.93
HMGCS1-205ENST00000508319 NCOA2Q15596 1464 aa20.83■□□□□ 0.93
HMGCS1-205ENST00000508319 ZNF644Q9H582 1327 aaPredicted RBP20.82■□□□□ 0.92
HMGCS1-205ENST00000508319 MROH2AA6NES4 1674 aa20.82■□□□□ 0.92
HMGCS1-205ENST00000508319 CNTLNQ9NXG0 1405 aa20.81■□□□□ 0.92
HMGCS1-205ENST00000508319 ADGBQ8N7X0 1667 aa20.81■□□□□ 0.92
HMGCS1-205ENST00000508319 LOC105371045A0A1W2PR82 267 aa20.81■□□□□ 0.92
HMGCS1-205ENST00000508319 A2MP01023 1474 aa20.81■□□□□ 0.92
HMGCS1-205ENST00000508319 UHRF1BP1Q6BDS2 1440 aa20.8■□□□□ 0.92
HMGCS1-205ENST00000508319 CAMSAP2Q08AD1 1489 aa20.78■□□□□ 0.92
HMGCS1-205ENST00000508319 ESF1Q9H501 851 aaKnown RBP20.77■□□□□ 0.92
HMGCS1-205ENST00000508319 STRCQ7RTU9 1775 aa20.77■□□□□ 0.91
HMGCS1-205ENST00000508319 LRRC9Q6ZRR7 1453 aa20.76■□□□□ 0.91
HMGCS1-205ENST00000508319 CLTCQ00610 1675 aaKnown RBP20.75■□□□□ 0.91
HMGCS1-205ENST00000508319 RTEL1-TNFRSF6BF6WH68 1400 aa20.75■□□□□ 0.91
HMGCS1-205ENST00000508319 CCDC141Q6ZP82 1450 aa20.75■□□□□ 0.91
HMGCS1-205ENST00000508319 MAP3K1Q13233 1512 aa20.73■□□□□ 0.91
HMGCS1-205ENST00000508319 FBXO41Q8TF61 875 aa20.72■□□□□ 0.91
HMGCS1-205ENST00000508319 ARHGEF5Q12774 1597 aa20.72■□□□□ 0.91
HMGCS1-205ENST00000508319 NPATQ14207 1427 aa20.71■□□□□ 0.91
HMGCS1-205ENST00000508319 ZMYM3Q14202 1370 aa20.7■□□□□ 0.9
HMGCS1-205ENST00000508319 DHX29Q7Z478 1369 aaKnown RBP20.66■□□□□ 0.9
HMGCS1-205ENST00000508319 MYO3AQ8NEV4 1616 aa20.66■□□□□ 0.9
HMGCS1-205ENST00000508319 ZNF142P52746 1687 aaPredicted RBP20.66■□□□□ 0.9
HMGCS1-205ENST00000508319 GGT6Q6P531 493 aa20.65■□□□□ 0.9
HMGCS1-205ENST00000508319 PTPRKQ15262 1439 aa20.64■□□□□ 0.89
HMGCS1-205ENST00000508319 KANK4Q5T7N3 995 aaPredicted RBP20.64■□□□□ 0.89
HMGCS1-205ENST00000508319 NCOA1Q15788 1441 aa20.63■□□□□ 0.89
HMGCS1-205ENST00000508319 RSPH4AQ5TD94 716 aa20.63■□□□□ 0.89
HMGCS1-205ENST00000508319 MYOM3Q5VTT5 1437 aa20.61■□□□□ 0.89
HMGCS1-205ENST00000508319 MAST1Q9Y2H9 1570 aa20.61■□□□□ 0.89
HMGCS1-205ENST00000508319 PPP6R1Q9UPN7 881 aa20.61■□□□□ 0.89
HMGCS1-205ENST00000508319 FAM135AQ9P2D6 1515 aa20.61■□□□□ 0.89
HMGCS1-205ENST00000508319 PTPRTO14522 1441 aa20.61■□□□□ 0.89
HMGCS1-205ENST00000508319 CAMSAP1Q5T5Y3 1602 aa20.6■□□□□ 0.89
HMGCS1-205ENST00000508319 CEP170BQ9Y4F5 1589 aaPredicted RBP20.6■□□□□ 0.89
HMGCS1-205ENST00000508319 DMRT2Q9Y5R5 561 aa20.6■□□□□ 0.89
HMGCS1-205ENST00000508319 KDM5DQ9BY66 1539 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms