RNA–Protein interactions for RNA: ENST00000502773.5

PDGFC-203, Transcript of platelet derived growth factor C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFC, Length 4,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-203ENST00000502773 DISP1Q96F81 1524 aa10.3□□□□□ -0.76
PDGFC-203ENST00000502773 NEFLP07196 543 aa10.3□□□□□ -0.76
PDGFC-203ENST00000502773 CHIC2Q9UKJ5 165 aa10.3□□□□□ -0.76
PDGFC-203ENST00000502773 PLEKHH2Q8IVE3 1493 aa10.3□□□□□ -0.76
PDGFC-203ENST00000502773 DAPK1P53355 1430 aa10.29□□□□□ -0.76
PDGFC-203ENST00000502773 MAPKBP1O60336 1514 aa10.28□□□□□ -0.76
PDGFC-203ENST00000502773 SIN3AQ96ST3 1273 aa10.28□□□□□ -0.76
PDGFC-203ENST00000502773 ZNF777Q9ULD5 760 aaPredicted RBP10.27□□□□□ -0.76
PDGFC-203ENST00000502773 NUP153P49790 1475 aaKnown RBP10.27□□□□□ -0.77
PDGFC-203ENST00000502773 SLC24A1O60721 1099 aa10.26□□□□□ -0.77
PDGFC-203ENST00000502773 KIF14Q15058 1648 aa10.26□□□□□ -0.77
PDGFC-203ENST00000502773 CDK13Q14004 1512 aaKnown RBP10.26□□□□□ -0.77
PDGFC-203ENST00000502773 GCC2Q8IWJ2 1684 aa10.26□□□□□ -0.77
PDGFC-203ENST00000502773 PRG4Q92954 1404 aaPredicted RBP10.24□□□□□ -0.77
PDGFC-203ENST00000502773 SHANK2Q9UPX8 1470 aa10.24□□□□□ -0.77
PDGFC-203ENST00000502773 ARID4BQ4LE39 1312 aaPredicted RBP10.24□□□□□ -0.77
PDGFC-203ENST00000502773 DNMT1P26358 1616 aaKnown RBP10.23□□□□□ -0.77
PDGFC-203ENST00000502773 ARID3CA6NKF2 412 aa10.23□□□□□ -0.77
PDGFC-203ENST00000502773 ABCC5O15440 1437 aa10.22□□□□□ -0.77
PDGFC-203ENST00000502773 EIF5BO60841 1220 aaKnown RBP10.22□□□□□ -0.77
PDGFC-203ENST00000502773 DDX10Q13206 875 aaKnown RBP10.22□□□□□ -0.77
PDGFC-203ENST00000502773 STAC3Q96MF2 364 aa10.22□□□□□ -0.77
PDGFC-203ENST00000502773 ADGRL2O95490 1459 aa10.22□□□□□ -0.77
PDGFC-203ENST00000502773 CEP170Q5SW79 1584 aa10.22□□□□□ -0.77
PDGFC-203ENST00000502773 ADCY10Q96PN6 1610 aa10.21□□□□□ -0.77
PDGFC-203ENST00000502773 CAMSAP2Q08AD1 1489 aa10.21□□□□□ -0.78
PDGFC-203ENST00000502773 EFCAB2Q5VUJ9 269 aa10.21□□□□□ -0.78
PDGFC-203ENST00000502773 GPATCH8Q9UKJ3 1502 aaKnown RBP10.2□□□□□ -0.78
PDGFC-203ENST00000502773 PHF23Q9BUL5 403 aaPredicted RBP10.2□□□□□ -0.78
PDGFC-203ENST00000502773 NPM1P06748 294 aaKnown RBP eCLIP10.19□□□□□ -0.78
PDGFC-203ENST00000502773 PTPRKQ15262 1439 aa10.19□□□□□ -0.78
PDGFC-203ENST00000502773 ANKRD50Q9ULJ7 1429 aa10.19□□□□□ -0.78
PDGFC-203ENST00000502773 ANP32EQ9BTT0 268 aa10.19□□□□□ -0.78
PDGFC-203ENST00000502773 ABCA8O94911 1581 aa10.19□□□□□ -0.78
PDGFC-203ENST00000502773 NCOA1Q15788 1441 aa10.19□□□□□ -0.78
PDGFC-203ENST00000502773 ROCK2O75116 1388 aaKnown RBP10.19□□□□□ -0.78
PDGFC-203ENST00000502773 PLB1Q6P1J6 1458 aa10.18□□□□□ -0.78
PDGFC-203ENST00000502773 MAGI3Q5TCQ9 1506 aa10.18□□□□□ -0.78
PDGFC-203ENST00000502773 KIAA1107Q9UPP5 1409 aa10.18□□□□□ -0.78
PDGFC-203ENST00000502773 ATP10BO94823 1461 aa10.17□□□□□ -0.78
PDGFC-203ENST00000502773 C9orf84Q5VXU9 1444 aa10.16□□□□□ -0.78
PDGFC-203ENST00000502773 ADGBQ8N7X0 1667 aa10.16□□□□□ -0.78
PDGFC-203ENST00000502773 ANKRD30BQ9BXX2 1392 aa10.16□□□□□ -0.78
PDGFC-203ENST00000502773 RPRD2Q5VT52 1461 aaKnown RBP10.16□□□□□ -0.78
PDGFC-203ENST00000502773 NUP155O75694 1391 aa10.16□□□□□ -0.78
PDGFC-203ENST00000502773 CCDC141Q6ZP82 1450 aa10.16□□□□□ -0.78
PDGFC-203ENST00000502773 ARHGEF5Q12774 1597 aa10.15□□□□□ -0.78
PDGFC-203ENST00000502773 L3MBTL2Q969R5 705 aa10.15□□□□□ -0.79
PDGFC-203ENST00000502773 PKD2Q13563 968 aa10.14□□□□□ -0.79
PDGFC-203ENST00000502773 LRRIQ1Q96JM4 1722 aa10.13□□□□□ -0.79
PDGFC-203ENST00000502773 KIF15Q9NS87 1388 aa10.13□□□□□ -0.79
PDGFC-203ENST00000502773 HSPA5P11021 654 aaKnown RBP10.13□□□□□ -0.79
PDGFC-203ENST00000502773 KANK1Q14678 1352 aa10.13□□□□□ -0.79
PDGFC-203ENST00000502773 UHRF1BP1LA0JNW5 1464 aa10.13□□□□□ -0.79
PDGFC-203ENST00000502773 ERICH6BQ5W0A0 696 aa10.11□□□□□ -0.79
PDGFC-203ENST00000502773 KTN1Q86UP2 1357 aaKnown RBP10.11□□□□□ -0.79
PDGFC-203ENST00000502773 CDCA8Q53HL2 280 aa10.11□□□□□ -0.79
PDGFC-203ENST00000502773 ABCC2Q92887 1545 aa10.11□□□□□ -0.79
PDGFC-203ENST00000502773 ABCC10Q5T3U5 1492 aa10.11□□□□□ -0.79
PDGFC-203ENST00000502773 ARHGAP5Q13017 1502 aa10.1□□□□□ -0.79
PDGFC-203ENST00000502773 ZNF644Q9H582 1327 aaPredicted RBP10.1□□□□□ -0.79
PDGFC-203ENST00000502773 ARHGEF12Q9NZN5 1544 aa10.09□□□□□ -0.79
PDGFC-203ENST00000502773 MYT1LQ9UL68 1186 aa10.08□□□□□ -0.8
PDGFC-203ENST00000502773 HNRNPMP52272 730 aaKnown RBP eCLIP10.07□□□□□ -0.8
PDGFC-203ENST00000502773 CCDC144AA2RUR9 1427 aa10.07□□□□□ -0.8
PDGFC-203ENST00000502773 KDM5DQ9BY66 1539 aa10.07□□□□□ -0.8
PDGFC-203ENST00000502773 CNTLNQ9NXG0 1405 aa10.07□□□□□ -0.8
PDGFC-203ENST00000502773 CARD11Q9BXL7 1154 aa10.07□□□□□ -0.8
PDGFC-203ENST00000502773 PLCH2O75038 1416 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 ARAP3Q8WWN8 1544 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 KCNH8Q96L42 1107 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 SHROOM2Q13796 1616 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 CCDC7Q96M83 1385 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 RTEL1-TNFRSF6BF6WH68 1400 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 ERBINQ96RT1 1412 aa10.06□□□□□ -0.8
PDGFC-203ENST00000502773 SPAG9O60271 1321 aaKnown RBP10.05□□□□□ -0.8
PDGFC-203ENST00000502773 DUOX2Q9NRD8 1548 aa10.05□□□□□ -0.8
PDGFC-203ENST00000502773 MAST1Q9Y2H9 1570 aa10.05□□□□□ -0.8
PDGFC-203ENST00000502773 CROCC2H7BZ55 1655 aa10.05□□□□□ -0.8
PDGFC-203ENST00000502773 ZNF326Q5BKZ1 582 aaKnown RBP10.04□□□□□ -0.8
PDGFC-203ENST00000502773 TEX14Q8IWB6 1497 aa10.04□□□□□ -0.8
PDGFC-203ENST00000502773 UHRF1BP1Q6BDS2 1440 aa10.04□□□□□ -0.8
PDGFC-203ENST00000502773 RALBP1Q15311 655 aa10.04□□□□□ -0.8
PDGFC-203ENST00000502773 PREX2Q70Z35 1606 aa10.03□□□□□ -0.8
PDGFC-203ENST00000502773 WASHC2AQ641Q2 1341 aa10.03□□□□□ -0.8
PDGFC-203ENST00000502773 WASHC2CQ9Y4E1 1318 aa10.03□□□□□ -0.8
PDGFC-203ENST00000502773 PZPP20742 1482 aa10.03□□□□□ -0.8
PDGFC-203ENST00000502773 OSCARQ8IYS5 282 aa10.02□□□□□ -0.8
PDGFC-203ENST00000502773 USP47Q96K76 1375 aa10.02□□□□□ -0.81
PDGFC-203ENST00000502773 CHD1O14646 1710 aa10.02□□□□□ -0.81
PDGFC-203ENST00000502773 KDM5BQ9UGL1 1544 aa10.01□□□□□ -0.81
PDGFC-203ENST00000502773 MRS2Q9HD23 443 aa10.01□□□□□ -0.81
PDGFC-203ENST00000502773 HNRNPUQ00839 825 aaKnown RBP eCLIP10.01□□□□□ -0.81
PDGFC-203ENST00000502773 DCAF11Q8TEB1 546 aa10.01□□□□□ -0.81
PDGFC-203ENST00000502773 CDC42BPAQ5VT25 1732 aa10.01□□□□□ -0.81
PDGFC-203ENST00000502773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10□□□□□ -0.81
PDGFC-203ENST00000502773 MBD5Q9P267 1494 aa10□□□□□ -0.81
PDGFC-203ENST00000502773 WDR7Q9Y4E6 1490 aa10□□□□□ -0.81
PDGFC-203ENST00000502773 RALGAPBQ86X10 1494 aa10□□□□□ -0.81
PDGFC-203ENST00000502773 EIF3AQ14152 1382 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms