RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ILDR2Q71H61 639 aa27.99■■■□□ 2.07
VIM-208ENST00000497849 PREX1Q8TCU6 1659 aa27.99■■■□□ 2.07
VIM-208ENST00000497849 SCAPERQ9BY12 1400 aa27.97■■■□□ 2.07
VIM-208ENST00000497849 PLCH2O75038 1416 aa27.94■■■□□ 2.06
VIM-208ENST00000497849 STRCQ7RTU9 1775 aa27.94■■■□□ 2.06
VIM-208ENST00000497849 DISP3Q9P2K9 1392 aa27.94■■■□□ 2.06
VIM-208ENST00000497849 ATP10AO60312 1499 aa27.94■■■□□ 2.06
VIM-208ENST00000497849 CDK13Q14004 1512 aaKnown RBP27.92■■■□□ 2.06
VIM-208ENST00000497849 CEBPAP49715 358 aaPredicted RBP27.92■■■□□ 2.06
VIM-208ENST00000497849 C9orf84Q5VXU9 1444 aa27.91■■■□□ 2.06
VIM-208ENST00000497849 SOCS7O14512 581 aa27.88■■■□□ 2.05
VIM-208ENST00000497849 DMRT2Q9Y5R5 561 aa27.84■■■□□ 2.05
VIM-208ENST00000497849 SETD1BQ9UPS6 1966 aaKnown RBP27.82■■■□□ 2.04
VIM-208ENST00000497849 MYO5CQ9NQX4 1742 aa27.82■■■□□ 2.04
VIM-208ENST00000497849 EEA1Q15075 1411 aa27.8■■■□□ 2.04
VIM-208ENST00000497849 UHRF1BP1Q6BDS2 1440 aa27.8■■■□□ 2.04
VIM-208ENST00000497849 EFCAB2Q5VUJ9 269 aa27.79■■■□□ 2.04
VIM-208ENST00000497849 KDM5CP41229 1560 aa27.76■■■□□ 2.03
VIM-208ENST00000497849 ZNF518AQ6AHZ1 1483 aa27.76■■■□□ 2.03
VIM-208ENST00000497849 SPATA31D1Q6ZQQ2 1576 aa27.75■■■□□ 2.03
VIM-208ENST00000497849 KIF14Q15058 1648 aa27.74■■■□□ 2.03
VIM-208ENST00000497849 AFAP1Q8N556 730 aa27.73■■■□□ 2.03
VIM-208ENST00000497849 PTPRTO14522 1441 aa27.73■■■□□ 2.03
VIM-208ENST00000497849 DIP2CQ9Y2E4 1556 aa27.73■■■□□ 2.03
VIM-208ENST00000497849 C3P01024 1663 aa27.72■■■□□ 2.03
VIM-208ENST00000497849 REREQ9P2R6 1566 aa27.69■■■□□ 2.02
VIM-208ENST00000497849 LTBP4Q8N2S1 1624 aa27.69■■■□□ 2.02
VIM-208ENST00000497849 ABCA6Q8N139 1617 aa27.67■■■□□ 2.02
VIM-208ENST00000497849 ARHGAP5Q13017 1502 aa27.67■■■□□ 2.02
VIM-208ENST00000497849 ATP1B4Q9UN42 357 aaPredicted RBP27.65■■■□□ 2.02
VIM-208ENST00000497849 FMN1Q68DA7 1419 aa27.63■■■□□ 2.01
VIM-208ENST00000497849 TROQ12816 1431 aaPredicted RBP27.62■■■□□ 2.01
VIM-208ENST00000497849 CDK11AQ9UQ88 783 aaPredicted RBP27.62■■■□□ 2.01
VIM-208ENST00000497849 MLH3Q9UHC1 1453 aa27.62■■■□□ 2.01
VIM-208ENST00000497849 MYT1LQ9UL68 1186 aa27.61■■■□□ 2.01
VIM-208ENST00000497849 AGLP35573 1532 aa27.61■■■□□ 2.01
VIM-208ENST00000497849 CDC42BPBQ9Y5S2 1711 aa27.61■■■□□ 2.01
VIM-208ENST00000497849 IQSEC2Q5JU85 1478 aa27.6■■■□□ 2.01
VIM-208ENST00000497849 TRAPPC8Q9Y2L5 1435 aa27.59■■■□□ 2.01
VIM-208ENST00000497849 NCOA1Q15788 1441 aa27.58■■■□□ 2.01
VIM-208ENST00000497849 LRRIQ1Q96JM4 1722 aa27.58■■■□□ 2.01
VIM-208ENST00000497849 ARHGAP35Q9NRY4 1499 aa27.57■■■□□ 2
VIM-208ENST00000497849 CLIP1P30622 1438 aa27.53■■■□□ 2
VIM-208ENST00000497849 ESF1Q9H501 851 aaKnown RBP27.53■■■□□ 2
VIM-208ENST00000497849 ABCC1P33527 1531 aa27.52■■■□□ 2
VIM-208ENST00000497849 KIDINS220Q9ULH0 1771 aa27.51■■□□□ 1.99
VIM-208ENST00000497849 ITSN2Q9NZM3 1697 aa27.51■■□□□ 1.99
VIM-208ENST00000497849 PREX2Q70Z35 1606 aa27.5■■□□□ 1.99
VIM-208ENST00000497849 CNTLNQ9NXG0 1405 aa27.49■■□□□ 1.99
VIM-208ENST00000497849 CAMSAP1Q5T5Y3 1602 aa27.49■■□□□ 1.99
VIM-208ENST00000497849 UBTFP17480 764 aaKnown RBP27.46■■□□□ 1.99
VIM-208ENST00000497849 EHMT2Q96KQ7 1210 aa27.46■■□□□ 1.99
VIM-208ENST00000497849 MROH2AA6NES4 1674 aa27.43■■□□□ 1.98
VIM-208ENST00000497849 NPATQ14207 1427 aa27.43■■□□□ 1.98
VIM-208ENST00000497849 ZNF335Q9H4Z2 1342 aaPredicted RBP27.41■■□□□ 1.98
VIM-208ENST00000497849 NCKAP5LQ9HCH0 1330 aa27.4■■□□□ 1.98
VIM-208ENST00000497849 CDC42BPAQ5VT25 1732 aa27.39■■□□□ 1.98
VIM-208ENST00000497849 ZMYM3Q14202 1370 aa27.38■■□□□ 1.97
VIM-208ENST00000497849 SAMD9LQ8IVG5 1584 aa27.36■■□□□ 1.97
VIM-208ENST00000497849 UBAP1LF5GYI3 381 aa27.36■■□□□ 1.97
VIM-208ENST00000497849 ZNF142P52746 1687 aaPredicted RBP27.33■■□□□ 1.97
VIM-208ENST00000497849 SUPT6HQ7KZ85 1726 aaKnown RBP27.33■■□□□ 1.97
VIM-208ENST00000497849 MYO3AQ8NEV4 1616 aa27.32■■□□□ 1.96
VIM-208ENST00000497849 PLA2R1Q13018 1463 aa27.32■■□□□ 1.96
VIM-208ENST00000497849 CLTCQ00610 1675 aaKnown RBP27.31■■□□□ 1.96
VIM-208ENST00000497849 TCOF1Q13428 1488 aaKnown RBP27.3■■□□□ 1.96
VIM-208ENST00000497849 CCDC18Q5T9S5 1454 aa27.3■■□□□ 1.96
VIM-208ENST00000497849 CEP170BQ9Y4F5 1589 aaPredicted RBP27.28■■□□□ 1.96
VIM-208ENST00000497849 CASKIN1Q8WXD9 1431 aa27.28■■□□□ 1.96
VIM-208ENST00000497849 PKD2Q13563 968 aa27.28■■□□□ 1.96
VIM-208ENST00000497849 SYCP2Q9BX26 1530 aa27.27■■□□□ 1.96
VIM-208ENST00000497849 PTPRKQ15262 1439 aa27.26■■□□□ 1.95
VIM-208ENST00000497849 PLXNC1O60486 1568 aa27.26■■□□□ 1.95
VIM-208ENST00000497849 SPAG9O60271 1321 aaKnown RBP27.25■■□□□ 1.95
VIM-208ENST00000497849 ZNF777Q9ULD5 760 aaPredicted RBP27.25■■□□□ 1.95
VIM-208ENST00000497849 ATP7AQ04656 1500 aa27.23■■□□□ 1.95
VIM-208ENST00000497849 HNRNPMP52272 730 aaKnown RBP eCLIP27.22■■□□□ 1.95
VIM-208ENST00000497849 GPATCH8Q9UKJ3 1502 aaKnown RBP27.21■■□□□ 1.95
VIM-208ENST00000497849 INO80Q9ULG1 1556 aaPredicted RBP27.21■■□□□ 1.95
VIM-208ENST00000497849 A2MP01023 1474 aa27.19■■□□□ 1.94
VIM-208ENST00000497849 PPP6R1Q9UPN7 881 aa27.18■■□□□ 1.94
VIM-208ENST00000497849 GGT6Q6P531 493 aa27.16■■□□□ 1.94
VIM-208ENST00000497849 MED1Q15648 1581 aaPredicted RBP27.16■■□□□ 1.94
VIM-208ENST00000497849 KIAA1107Q9UPP5 1409 aa27.16■■□□□ 1.94
VIM-208ENST00000497849 HSPA1LP34931 641 aa27.15■■□□□ 1.94
VIM-208ENST00000497849 DNMT1P26358 1616 aaKnown RBP27.13■■□□□ 1.93
VIM-208ENST00000497849 A2ML1A8K2U0 1454 aa27.12■■□□□ 1.93
VIM-208ENST00000497849 FYCO1Q9BQS8 1478 aa27.12■■□□□ 1.93
VIM-208ENST00000497849 PLEKHH2Q8IVE3 1493 aa27.1■■□□□ 1.93
VIM-208ENST00000497849 ADGBQ8N7X0 1667 aa27.08■■□□□ 1.93
VIM-208ENST00000497849 PIP4K2BP78356 416 aa27.08■■□□□ 1.93
VIM-208ENST00000497849 NEURL4Q96JN8 1562 aa27.08■■□□□ 1.93
VIM-208ENST00000497849 SCAF1Q9H7N4 1312 aaKnown RBP27.08■■□□□ 1.93
VIM-208ENST00000497849 POLR1AO95602 1720 aaPredicted RBP27.07■■□□□ 1.92
VIM-208ENST00000497849 CFDP1Q9UEE9 299 aaPredicted RBP27.07■■□□□ 1.92
VIM-208ENST00000497849 CPS1P31327 1500 aa27.06■■□□□ 1.92
VIM-208ENST00000497849 TOM1O60784 492 aa27.04■■□□□ 1.92
VIM-208ENST00000497849 SHANK2Q9UPX8 1470 aa27.03■■□□□ 1.92
VIM-208ENST00000497849 CCNB3Q8WWL7 1395 aa27.01■■□□□ 1.91
VIM-208ENST00000497849 ALKQ9UM73 1620 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms