RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 SIGLEC1Q9BZZ2 1709 aa23.3■■□□□ 1.32
VTI1A-209ENST00000496445 POGZQ7Z3K3 1410 aa23.29■■□□□ 1.32
VTI1A-209ENST00000496445 CDC42BPBQ9Y5S2 1711 aa23.29■■□□□ 1.32
VTI1A-209ENST00000496445 ZFYVE16Q7Z3T8 1539 aa23.28■■□□□ 1.32
VTI1A-209ENST00000496445 PREX2Q70Z35 1606 aa23.26■■□□□ 1.31
VTI1A-209ENST00000496445 HECW2Q9P2P5 1572 aa23.26■■□□□ 1.31
VTI1A-209ENST00000496445 MADDQ8WXG6 1647 aa23.26■■□□□ 1.31
VTI1A-209ENST00000496445 SCAPERQ9BY12 1400 aa23.25■■□□□ 1.31
VTI1A-209ENST00000496445 ARHGAP5Q13017 1502 aa23.25■■□□□ 1.31
VTI1A-209ENST00000496445 YEATS2Q9ULM3 1422 aa23.25■■□□□ 1.31
VTI1A-209ENST00000496445 MAGI2Q86UL8 1455 aa23.23■■□□□ 1.31
VTI1A-209ENST00000496445 CDC42BPAQ5VT25 1732 aa23.22■■□□□ 1.31
VTI1A-209ENST00000496445 KDM5CP41229 1560 aa23.19■■□□□ 1.3
VTI1A-209ENST00000496445 PTPRMP28827 1452 aa23.19■■□□□ 1.3
VTI1A-209ENST00000496445 EFCAB2Q5VUJ9 269 aa23.19■■□□□ 1.3
VTI1A-209ENST00000496445 RIMS1Q86UR5 1692 aaKnown RBP23.17■■□□□ 1.3
VTI1A-209ENST00000496445 PHF23Q9BUL5 403 aaPredicted RBP23.17■■□□□ 1.3
VTI1A-209ENST00000496445 ABCC1P33527 1531 aa23.17■■□□□ 1.3
VTI1A-209ENST00000496445 ITSN2Q9NZM3 1697 aa23.16■■□□□ 1.3
VTI1A-209ENST00000496445 ZNF518AQ6AHZ1 1483 aa23.16■■□□□ 1.3
VTI1A-209ENST00000496445 ARID4BQ4LE39 1312 aaPredicted RBP23.15■■□□□ 1.3
VTI1A-209ENST00000496445 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
VTI1A-209ENST00000496445 ARHGEF12Q9NZN5 1544 aa23.12■■□□□ 1.29
VTI1A-209ENST00000496445 FER1L4A9Z1Z3 1794 aa23.1■■□□□ 1.29
VTI1A-209ENST00000496445 DIP2CQ9Y2E4 1556 aa23.1■■□□□ 1.29
VTI1A-209ENST00000496445 C9orf84Q5VXU9 1444 aa23.09■■□□□ 1.29
VTI1A-209ENST00000496445 ATP10AO60312 1499 aa23.09■■□□□ 1.29
VTI1A-209ENST00000496445 ABCA6Q8N139 1617 aa23.08■■□□□ 1.29
VTI1A-209ENST00000496445 SAMD9LQ8IVG5 1584 aa23.08■■□□□ 1.29
VTI1A-209ENST00000496445 AFAP1Q8N556 730 aa23.06■■□□□ 1.28
VTI1A-209ENST00000496445 GPATCH8Q9UKJ3 1502 aaKnown RBP23.06■■□□□ 1.28
VTI1A-209ENST00000496445 TRAPPC8Q9Y2L5 1435 aa23.06■■□□□ 1.28
VTI1A-209ENST00000496445 REREQ9P2R6 1566 aa23.04■■□□□ 1.28
VTI1A-209ENST00000496445 MLH3Q9UHC1 1453 aa23.04■■□□□ 1.28
VTI1A-209ENST00000496445 KIDINS220Q9ULH0 1771 aa23.03■■□□□ 1.28
VTI1A-209ENST00000496445 EHBP1L1Q8N3D4 1523 aa23.03■■□□□ 1.28
VTI1A-209ENST00000496445 SYCP2Q9BX26 1530 aa23.02■■□□□ 1.28
VTI1A-209ENST00000496445 TIAM1Q13009 1591 aa23.01■■□□□ 1.27
VTI1A-209ENST00000496445 MTUS2Q5JR59 1369 aa23■■□□□ 1.27
VTI1A-209ENST00000496445 LMTK3Q96Q04 1460 aa22.98■■□□□ 1.27
VTI1A-209ENST00000496445 MLECQ14165 292 aa22.97■■□□□ 1.27
VTI1A-209ENST00000496445 CCNB3Q8WWL7 1395 aa22.95■■□□□ 1.26
VTI1A-209ENST00000496445 INO80Q9ULG1 1556 aaPredicted RBP22.93■■□□□ 1.26
VTI1A-209ENST00000496445 LOC105371045A0A1W2PR82 267 aa22.93■■□□□ 1.26
VTI1A-209ENST00000496445 AGLP35573 1532 aa22.92■■□□□ 1.26
VTI1A-209ENST00000496445 ZNF777Q9ULD5 760 aaPredicted RBP22.92■■□□□ 1.26
VTI1A-209ENST00000496445 PLEKHH2Q8IVE3 1493 aa22.91■■□□□ 1.26
VTI1A-209ENST00000496445 SUPT6HQ7KZ85 1726 aaKnown RBP22.91■■□□□ 1.26
VTI1A-209ENST00000496445 KIAA1107Q9UPP5 1409 aa22.91■■□□□ 1.26
VTI1A-209ENST00000496445 MYT1LQ9UL68 1186 aa22.9■■□□□ 1.26
VTI1A-209ENST00000496445 ATP7AQ04656 1500 aa22.89■■□□□ 1.26
VTI1A-209ENST00000496445 VPS8Q8N3P4 1428 aa22.89■■□□□ 1.25
VTI1A-209ENST00000496445 CFDP1Q9UEE9 299 aaPredicted RBP22.88■■□□□ 1.25
VTI1A-209ENST00000496445 PLPPR3Q6T4P5 718 aa22.87■■□□□ 1.25
VTI1A-209ENST00000496445 HNRNPMP52272 730 aaKnown RBP eCLIP22.86■■□□□ 1.25
VTI1A-209ENST00000496445 PREX1Q8TCU6 1659 aa22.86■■□□□ 1.25
VTI1A-209ENST00000496445 NCOA2Q15596 1464 aa22.85■■□□□ 1.25
VTI1A-209ENST00000496445 PLXNC1O60486 1568 aa22.85■■□□□ 1.25
VTI1A-209ENST00000496445 C3P01024 1663 aa22.84■■□□□ 1.25
VTI1A-209ENST00000496445 MBD5Q9P267 1494 aa22.83■■□□□ 1.25
VTI1A-209ENST00000496445 SPAG9O60271 1321 aaKnown RBP22.82■■□□□ 1.24
VTI1A-209ENST00000496445 ZNF644Q9H582 1327 aaPredicted RBP22.82■■□□□ 1.24
VTI1A-209ENST00000496445 ADGBQ8N7X0 1667 aa22.8■■□□□ 1.24
VTI1A-209ENST00000496445 LRRC9Q6ZRR7 1453 aa22.79■■□□□ 1.24
VTI1A-209ENST00000496445 CEBPAP49715 358 aaPredicted RBP22.78■■□□□ 1.24
VTI1A-209ENST00000496445 CAMSAP2Q08AD1 1489 aa22.78■■□□□ 1.24
VTI1A-209ENST00000496445 HSPA2P54652 639 aa22.76■■□□□ 1.23
VTI1A-209ENST00000496445 A2MP01023 1474 aa22.76■■□□□ 1.23
VTI1A-209ENST00000496445 MROH2AA6NES4 1674 aa22.76■■□□□ 1.23
VTI1A-209ENST00000496445 MAP3K1Q13233 1512 aa22.76■■□□□ 1.23
VTI1A-209ENST00000496445 ILDR1Q86SU0 546 aaPredicted RBP22.72■■□□□ 1.23
VTI1A-209ENST00000496445 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
VTI1A-209ENST00000496445 CLTCQ00610 1675 aaKnown RBP22.71■■□□□ 1.23
VTI1A-209ENST00000496445 SETD1BQ9UPS6 1966 aaKnown RBP22.71■■□□□ 1.23
VTI1A-209ENST00000496445 CNTLNQ9NXG0 1405 aa22.71■■□□□ 1.23
VTI1A-209ENST00000496445 ARHGEF5Q12774 1597 aa22.71■■□□□ 1.23
VTI1A-209ENST00000496445 RTEL1-TNFRSF6BF6WH68 1400 aa22.7■■□□□ 1.22
VTI1A-209ENST00000496445 UHRF1BP1Q6BDS2 1440 aa22.67■■□□□ 1.22
VTI1A-209ENST00000496445 KANK4Q5T7N3 995 aaPredicted RBP22.67■■□□□ 1.22
VTI1A-209ENST00000496445 STRCQ7RTU9 1775 aa22.67■■□□□ 1.22
VTI1A-209ENST00000496445 ESF1Q9H501 851 aaKnown RBP22.64■■□□□ 1.21
VTI1A-209ENST00000496445 MYOM3Q5VTT5 1437 aa22.61■■□□□ 1.21
VTI1A-209ENST00000496445 MAST1Q9Y2H9 1570 aa22.6■■□□□ 1.21
VTI1A-209ENST00000496445 ZMYM3Q14202 1370 aa22.6■■□□□ 1.21
VTI1A-209ENST00000496445 DHX29Q7Z478 1369 aaKnown RBP22.6■■□□□ 1.21
VTI1A-209ENST00000496445 NPATQ14207 1427 aa22.59■■□□□ 1.21
VTI1A-209ENST00000496445 MYO3AQ8NEV4 1616 aa22.59■■□□□ 1.21
VTI1A-209ENST00000496445 ZNF142P52746 1687 aaPredicted RBP22.58■■□□□ 1.2
VTI1A-209ENST00000496445 MIA2Q96PC5 1412 aa22.57■■□□□ 1.2
VTI1A-209ENST00000496445 RSPH4AQ5TD94 716 aa22.56■■□□□ 1.2
VTI1A-209ENST00000496445 GGT6Q6P531 493 aa22.56■■□□□ 1.2
VTI1A-209ENST00000496445 PTPRKQ15262 1439 aa22.55■■□□□ 1.2
VTI1A-209ENST00000496445 CROCC2H7BZ55 1655 aa22.55■■□□□ 1.2
VTI1A-209ENST00000496445 KDM5DQ9BY66 1539 aa22.52■■□□□ 1.2
VTI1A-209ENST00000496445 FAM135AQ9P2D6 1515 aa22.52■■□□□ 1.2
VTI1A-209ENST00000496445 RNF17Q9BXT8 1623 aaKnown RBP22.52■■□□□ 1.2
VTI1A-209ENST00000496445 PTPN23Q9H3S7 1636 aa22.52■■□□□ 1.2
VTI1A-209ENST00000496445 PPP6R1Q9UPN7 881 aa22.5■■□□□ 1.19
VTI1A-209ENST00000496445 CEP170BQ9Y4F5 1589 aaPredicted RBP22.5■■□□□ 1.19
VTI1A-209ENST00000496445 EIF2AK4Q9P2K8 1649 aaKnown RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms