RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 HCSTQ9UBK5 93 aa5.84□□□□□ -1.47
HMGB1-208ENST00000490788 BOLA1Q9Y3E2 137 aa5.84□□□□□ -1.47
HMGB1-208ENST00000490788 STK24Q9Y6E0 443 aa5.84□□□□□ -1.47
HMGB1-208ENST00000490788 CHGAP10645 457 aaKnown RBP5.83□□□□□ -1.48
HMGB1-208ENST00000490788 DPY19L2Q6NUT2 758 aa5.83□□□□□ -1.48
HMGB1-208ENST00000490788 CABP2Q9NPB3 220 aa5.83□□□□□ -1.48
HMGB1-208ENST00000490788 BCL11BQ9C0K0 894 aaPredicted RBP5.82□□□□□ -1.48
HMGB1-208ENST00000490788 LOC100996750A0A140TA64 210 aa5.81□□□□□ -1.48
HMGB1-208ENST00000490788 HOXB3P14651 431 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-208ENST00000490788 ZNF687Q8N1G0 1237 aa5.81□□□□□ -1.48
HMGB1-208ENST00000490788 KRTAP4-6Q9BYQ5 205 aa5.81□□□□□ -1.48
HMGB1-208ENST00000490788 DOK7Q18PE1 504 aa5.79□□□□□ -1.48
HMGB1-208ENST00000490788 HS6ST3Q8IZP7 471 aa5.79□□□□□ -1.48
HMGB1-208ENST00000490788 ZNF710Q8N1W2 664 aa5.78□□□□□ -1.48
HMGB1-208ENST00000490788 RIMBP2O15034 1052 aa5.77□□□□□ -1.49
HMGB1-208ENST00000490788 VARS2Q5ST30 1063 aaKnown RBP5.76□□□□□ -1.49
HMGB1-208ENST00000490788 EFCAB3Q8N7B9 438 aa5.76□□□□□ -1.49
HMGB1-208ENST00000490788 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-208ENST00000490788 SOX12O15370 315 aa5.75□□□□□ -1.49
HMGB1-208ENST00000490788 ZSWIM6Q9HCJ5 1215 aa5.75□□□□□ -1.49
HMGB1-208ENST00000490788 RYDENQ9NUL5 291 aaKnown RBP5.75□□□□□ -1.49
HMGB1-208ENST00000490788 NLRP6P59044 892 aa5.73□□□□□ -1.49
HMGB1-208ENST00000490788 MICALL2Q8IY33 904 aa5.72□□□□□ -1.49
HMGB1-208ENST00000490788 BBXQ8WY36 941 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-208ENST00000490788 Q6ZNB5 142 aa5.71□□□□□ -1.5
HMGB1-208ENST00000490788 IFFO2Q5TF58 517 aa5.7□□□□□ -1.5
HMGB1-208ENST00000490788 ANKRD13DQ6ZTN6 518 aa5.7□□□□□ -1.5
HMGB1-208ENST00000490788 PHF8Q9UPP1 1060 aa5.7□□□□□ -1.5
HMGB1-208ENST00000490788 GPR153Q6NV75 609 aa5.69□□□□□ -1.5
HMGB1-208ENST00000490788 TMEM92Q6UXU6 159 aa5.69□□□□□ -1.5
HMGB1-208ENST00000490788 DNAJC5Q9H3Z4 198 aa5.68□□□□□ -1.5
HMGB1-208ENST00000490788 SPRYD3Q8NCJ5 442 aa5.67□□□□□ -1.5
HMGB1-208ENST00000490788 MS4A4AQ96JQ5 239 aa5.67□□□□□ -1.5
HMGB1-208ENST00000490788 CFAP44Q96MT7 982 aa5.67□□□□□ -1.5
HMGB1-208ENST00000490788 MFRPQ9BY79 579 aa5.67□□□□□ -1.5
HMGB1-208ENST00000490788 LSM11P83369 360 aaKnown RBP eCLIP5.66□□□□□ -1.5
HMGB1-208ENST00000490788 NKX1-1Q15270 411 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-208ENST00000490788 PAXIP1Q6ZW49 1069 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-208ENST00000490788 FBXO22Q8NEZ5 403 aa5.64□□□□□ -1.51
HMGB1-208ENST00000490788 GTPBP6O43824 516 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-208ENST00000490788 ARSIQ5FYB1 569 aa5.62□□□□□ -1.51
HMGB1-208ENST00000490788 ZNF316A6NFI3 1004 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-208ENST00000490788 A0A0G2JS52 829 aa5.59□□□□□ -1.51
HMGB1-208ENST00000490788 KIF3CO14782 793 aa5.59□□□□□ -1.51
HMGB1-208ENST00000490788 PBX2P40425 430 aa5.59□□□□□ -1.51
HMGB1-208ENST00000490788 LAPTM4AQ15012 233 aa5.59□□□□□ -1.51
HMGB1-208ENST00000490788 PPP1R37O75864 691 aa5.58□□□□□ -1.52
HMGB1-208ENST00000490788 SLC34A2O95436 690 aa5.58□□□□□ -1.52
HMGB1-208ENST00000490788 PLCB2Q00722 1185 aa5.58□□□□□ -1.52
HMGB1-208ENST00000490788 TMC2Q8TDI7 906 aa5.57□□□□□ -1.52
HMGB1-208ENST00000490788 C2orf72A6NCS6 295 aa5.55□□□□□ -1.52
HMGB1-208ENST00000490788 HAP1P54257 671 aaPredicted RBP5.55□□□□□ -1.52
HMGB1-208ENST00000490788 TRAF7Q6Q0C0 670 aa5.55□□□□□ -1.52
HMGB1-208ENST00000490788 KHSRPQ92945 711 aaKnown RBP eCLIP5.55□□□□□ -1.52
HMGB1-208ENST00000490788 PSDA5PKW4 1024 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-208ENST00000490788 NUDT7P0C024 238 aa5.53□□□□□ -1.52
HMGB1-208ENST00000490788 PDE4AP27815 886 aa5.53□□□□□ -1.52
HMGB1-208ENST00000490788 PCDHGA4Q9Y5G9 962 aa5.53□□□□□ -1.52
HMGB1-208ENST00000490788 LHX6Q9UPM6 363 aa5.52□□□□□ -1.53
HMGB1-208ENST00000490788 LCE2BO14633 110 aa5.51□□□□□ -1.53
HMGB1-208ENST00000490788 WDR70Q9NW82 654 aa5.51□□□□□ -1.53
HMGB1-208ENST00000490788 ARHGAP33O14559 1287 aa5.5□□□□□ -1.53
HMGB1-208ENST00000490788 LARP6Q9BRS8 491 aaKnown RBP5.5□□□□□ -1.53
HMGB1-208ENST00000490788 GPHNQ9NQX3 736 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-208ENST00000490788 POTEEQ6S8J3 1075 aa5.49□□□□□ -1.53
HMGB1-208ENST00000490788 ZNF775Q96BV0 537 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-208ENST00000490788 TSHZ2Q9NRE2 1034 aa5.49□□□□□ -1.53
HMGB1-208ENST00000490788 TK2O00142 265 aa5.48□□□□□ -1.53
HMGB1-208ENST00000490788 PTCD2Q8WV60 388 aaKnown RBP5.48□□□□□ -1.53
HMGB1-208ENST00000490788 DDX27Q96GQ7 796 aaKnown RBP5.48□□□□□ -1.53
HMGB1-208ENST00000490788 KDM4FA0A1W2PPD8 638 aa5.47□□□□□ -1.53
HMGB1-208ENST00000490788 ADGRD1Q6QNK2 874 aa5.47□□□□□ -1.53
HMGB1-208ENST00000490788 AXIN2Q9Y2T1 843 aa5.47□□□□□ -1.53
HMGB1-208ENST00000490788 FOXK1P85037 733 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 PPP1R15BQ5SWA1 713 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 CADPS2Q86UW7 1296 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 PLPP6Q8IY26 295 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 CRISPLD2Q9H0B8 497 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 NCKAP5LQ9HCH0 1330 aa5.46□□□□□ -1.54
HMGB1-208ENST00000490788 DSG2Q14126 1118 aa5.45□□□□□ -1.54
HMGB1-208ENST00000490788 ZNF787Q6DD87 383 aa5.45□□□□□ -1.54
HMGB1-208ENST00000490788 TBC1D12O60347 775 aa5.44□□□□□ -1.54
HMGB1-208ENST00000490788 HRO43593 1189 aa5.43□□□□□ -1.54
HMGB1-208ENST00000490788 PPP4R3BQ5MIZ7 849 aa5.43□□□□□ -1.54
HMGB1-208ENST00000490788 MFSD10Q14728 455 aa5.42□□□□□ -1.54
HMGB1-208ENST00000490788 VSIG10Q8N0Z9 540 aa5.42□□□□□ -1.54
HMGB1-208ENST00000490788 MAP3K9P80192 1104 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 E2F4Q16254 413 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 DMRTA1Q5VZB9 504 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 P3H3Q8IVL6 736 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 UPF1Q92900 1129 aaKnown RBP eCLIP5.4□□□□□ -1.54
HMGB1-208ENST00000490788 KCNH8Q96L42 1107 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 STAC3Q96MF2 364 aa5.4□□□□□ -1.54
HMGB1-208ENST00000490788 SLC24A1O60721 1099 aa5.39□□□□□ -1.55
HMGB1-208ENST00000490788 PSEN2P49810 448 aa5.39□□□□□ -1.55
HMGB1-208ENST00000490788 STK17AQ9UEE5 414 aa5.39□□□□□ -1.55
HMGB1-208ENST00000490788 KCTD12Q96CX2 325 aaKnown RBP5.38□□□□□ -1.55
HMGB1-208ENST00000490788 SLC4A5Q9BY07 1137 aa5.38□□□□□ -1.55
HMGB1-208ENST00000490788 OXER1Q8TDS5 423 aa5.36□□□□□ -1.55
HMGB1-208ENST00000490788 VPS9D1Q9Y2B5 631 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms