RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 NUP153P49790 1475 aaKnown RBP23.75■■□□□ 1.39
EXOSC3-207ENST00000490516 ARHGEF12Q9NZN5 1544 aa23.74■■□□□ 1.39
EXOSC3-207ENST00000490516 SAMD9Q5K651 1589 aa23.74■■□□□ 1.39
EXOSC3-207ENST00000490516 MAGI2Q86UL8 1455 aa23.72■■□□□ 1.39
EXOSC3-207ENST00000490516 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.71■■□□□ 1.39
EXOSC3-207ENST00000490516 UHRF1BP1Q6BDS2 1440 aa23.67■■□□□ 1.38
EXOSC3-207ENST00000490516 LTBP4Q8N2S1 1624 aa23.66■■□□□ 1.38
EXOSC3-207ENST00000490516 SETD1BQ9UPS6 1966 aaKnown RBP23.66■■□□□ 1.38
EXOSC3-207ENST00000490516 PLEKHD1A6NEE1 506 aa23.66■■□□□ 1.38
EXOSC3-207ENST00000490516 ATP10AO60312 1499 aa23.64■■□□□ 1.38
EXOSC3-207ENST00000490516 PTPRTO14522 1441 aa23.64■■□□□ 1.37
EXOSC3-207ENST00000490516 C9orf84Q5VXU9 1444 aa23.62■■□□□ 1.37
EXOSC3-207ENST00000490516 SCAPERQ9BY12 1400 aa23.61■■□□□ 1.37
EXOSC3-207ENST00000490516 IQSEC2Q5JU85 1478 aa23.59■■□□□ 1.37
EXOSC3-207ENST00000490516 C3P01024 1663 aa23.55■■□□□ 1.36
EXOSC3-207ENST00000490516 RANGAP1P46060 587 aaPredicted RBP23.53■■□□□ 1.36
EXOSC3-207ENST00000490516 PLCH2O75038 1416 aa23.5■■□□□ 1.35
EXOSC3-207ENST00000490516 NCOA1Q15788 1441 aa23.47■■□□□ 1.35
EXOSC3-207ENST00000490516 CDK13Q14004 1512 aaKnown RBP23.46■■□□□ 1.35
EXOSC3-207ENST00000490516 MYO5CQ9NQX4 1742 aa23.45■■□□□ 1.34
EXOSC3-207ENST00000490516 UBAP1LF5GYI3 381 aa23.45■■□□□ 1.34
EXOSC3-207ENST00000490516 DIP2CQ9Y2E4 1556 aa23.43■■□□□ 1.34
EXOSC3-207ENST00000490516 TRAPPC8Q9Y2L5 1435 aa23.41■■□□□ 1.34
EXOSC3-207ENST00000490516 KDM5CP41229 1560 aa23.4■■□□□ 1.34
EXOSC3-207ENST00000490516 EFCAB2Q5VUJ9 269 aa23.4■■□□□ 1.34
EXOSC3-207ENST00000490516 ZNF518AQ6AHZ1 1483 aa23.4■■□□□ 1.34
EXOSC3-207ENST00000490516 CAMSAP1Q5T5Y3 1602 aa23.4■■□□□ 1.34
EXOSC3-207ENST00000490516 ZNF335Q9H4Z2 1342 aaPredicted RBP23.39■■□□□ 1.34
EXOSC3-207ENST00000490516 AFAP1Q8N556 730 aa23.39■■□□□ 1.33
EXOSC3-207ENST00000490516 ABCA6Q8N139 1617 aa23.38■■□□□ 1.33
EXOSC3-207ENST00000490516 MYT1LQ9UL68 1186 aa23.38■■□□□ 1.33
EXOSC3-207ENST00000490516 REREQ9P2R6 1566 aa23.38■■□□□ 1.33
EXOSC3-207ENST00000490516 MED1Q15648 1581 aaPredicted RBP23.37■■□□□ 1.33
EXOSC3-207ENST00000490516 ESF1Q9H501 851 aaKnown RBP23.35■■□□□ 1.33
EXOSC3-207ENST00000490516 NCKAP5LQ9HCH0 1330 aa23.33■■□□□ 1.33
EXOSC3-207ENST00000490516 CSRNP3Q8WYN3 585 aa23.33■■□□□ 1.33
EXOSC3-207ENST00000490516 KIF14Q15058 1648 aa23.33■■□□□ 1.32
EXOSC3-207ENST00000490516 AGLP35573 1532 aa23.3■■□□□ 1.32
EXOSC3-207ENST00000490516 ARHGAP5Q13017 1502 aa23.3■■□□□ 1.32
EXOSC3-207ENST00000490516 HSPA1LP34931 641 aa23.27■■□□□ 1.32
EXOSC3-207ENST00000490516 SUPT6HQ7KZ85 1726 aaKnown RBP23.27■■□□□ 1.32
EXOSC3-207ENST00000490516 MLH3Q9UHC1 1453 aa23.26■■□□□ 1.31
EXOSC3-207ENST00000490516 CNTLNQ9NXG0 1405 aa23.25■■□□□ 1.31
EXOSC3-207ENST00000490516 SCAF1Q9H7N4 1312 aaKnown RBP23.24■■□□□ 1.31
EXOSC3-207ENST00000490516 MROH2AA6NES4 1674 aa23.23■■□□□ 1.31
EXOSC3-207ENST00000490516 CDC42BPBQ9Y5S2 1711 aa23.23■■□□□ 1.31
EXOSC3-207ENST00000490516 NPATQ14207 1427 aa23.23■■□□□ 1.31
EXOSC3-207ENST00000490516 ATP1B4Q9UN42 357 aaPredicted RBP23.22■■□□□ 1.31
EXOSC3-207ENST00000490516 PIP4K2BP78356 416 aa23.21■■□□□ 1.31
EXOSC3-207ENST00000490516 KIDINS220Q9ULH0 1771 aa23.21■■□□□ 1.31
EXOSC3-207ENST00000490516 ZNF142P52746 1687 aaPredicted RBP23.2■■□□□ 1.3
EXOSC3-207ENST00000490516 MYO3AQ8NEV4 1616 aa23.19■■□□□ 1.3
EXOSC3-207ENST00000490516 ITSN2Q9NZM3 1697 aa23.18■■□□□ 1.3
EXOSC3-207ENST00000490516 PLA2R1Q13018 1463 aa23.17■■□□□ 1.3
EXOSC3-207ENST00000490516 PKD2Q13563 968 aa23.17■■□□□ 1.3
EXOSC3-207ENST00000490516 TCOF1Q13428 1488 aaKnown RBP23.17■■□□□ 1.3
EXOSC3-207ENST00000490516 ZMYM3Q14202 1370 aa23.16■■□□□ 1.3
EXOSC3-207ENST00000490516 ABCC1P33527 1531 aa23.15■■□□□ 1.3
EXOSC3-207ENST00000490516 TROQ12816 1431 aaPredicted RBP23.15■■□□□ 1.3
EXOSC3-207ENST00000490516 CEP170BQ9Y4F5 1589 aaPredicted RBP23.14■■□□□ 1.3
EXOSC3-207ENST00000490516 CLTCQ00610 1675 aaKnown RBP23.14■■□□□ 1.29
EXOSC3-207ENST00000490516 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
EXOSC3-207ENST00000490516 CDK11AQ9UQ88 783 aaPredicted RBP23.14■■□□□ 1.29
EXOSC3-207ENST00000490516 PPP6R1Q9UPN7 881 aa23.13■■□□□ 1.29
EXOSC3-207ENST00000490516 PREX2Q70Z35 1606 aa23.11■■□□□ 1.29
EXOSC3-207ENST00000490516 LRRIQ1Q96JM4 1722 aa23.11■■□□□ 1.29
EXOSC3-207ENST00000490516 TOM1O60784 492 aa23.09■■□□□ 1.29
EXOSC3-207ENST00000490516 CLIP1P30622 1438 aa23.08■■□□□ 1.29
EXOSC3-207ENST00000490516 PTPRKQ15262 1439 aa23.06■■□□□ 1.28
EXOSC3-207ENST00000490516 FMN1Q68DA7 1419 aa23.06■■□□□ 1.28
EXOSC3-207ENST00000490516 CPS1P31327 1500 aa23.03■■□□□ 1.28
EXOSC3-207ENST00000490516 POLR1AO95602 1720 aaPredicted RBP23.03■■□□□ 1.28
EXOSC3-207ENST00000490516 SAMD9LQ8IVG5 1584 aa23.03■■□□□ 1.28
EXOSC3-207ENST00000490516 CDC42BPAQ5VT25 1732 aa23.02■■□□□ 1.28
EXOSC3-207ENST00000490516 DNMT1P26358 1616 aaKnown RBP23.01■■□□□ 1.27
EXOSC3-207ENST00000490516 ALKQ9UM73 1620 aa23.01■■□□□ 1.27
EXOSC3-207ENST00000490516 EEA1Q15075 1411 aa23.01■■□□□ 1.27
EXOSC3-207ENST00000490516 SHANK2Q9UPX8 1470 aa23■■□□□ 1.27
EXOSC3-207ENST00000490516 NEURL4Q96JN8 1562 aa22.99■■□□□ 1.27
EXOSC3-207ENST00000490516 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
EXOSC3-207ENST00000490516 ARHGAP35Q9NRY4 1499 aa22.98■■□□□ 1.27
EXOSC3-207ENST00000490516 A2ML1A8K2U0 1454 aa22.97■■□□□ 1.27
EXOSC3-207ENST00000490516 PLXNC1O60486 1568 aa22.95■■□□□ 1.26
EXOSC3-207ENST00000490516 SYCP2Q9BX26 1530 aa22.93■■□□□ 1.26
EXOSC3-207ENST00000490516 SPAG9O60271 1321 aaKnown RBP22.93■■□□□ 1.26
EXOSC3-207ENST00000490516 GGT6Q6P531 493 aa22.93■■□□□ 1.26
EXOSC3-207ENST00000490516 EHMT2Q96KQ7 1210 aa22.92■■□□□ 1.26
EXOSC3-207ENST00000490516 ZNF777Q9ULD5 760 aaPredicted RBP22.92■■□□□ 1.26
EXOSC3-207ENST00000490516 VWDEQ8N2E2 1590 aa22.92■■□□□ 1.26
EXOSC3-207ENST00000490516 ATP7AQ04656 1500 aa22.92■■□□□ 1.26
EXOSC3-207ENST00000490516 RGS17Q9UGC6 210 aaPredicted RBP22.91■■□□□ 1.26
EXOSC3-207ENST00000490516 A2MP01023 1474 aa22.9■■□□□ 1.26
EXOSC3-207ENST00000490516 INO80Q9ULG1 1556 aaPredicted RBP22.89■■□□□ 1.26
EXOSC3-207ENST00000490516 HNRNPMP52272 730 aaKnown RBP eCLIP22.88■■□□□ 1.25
EXOSC3-207ENST00000490516 UBTFP17480 764 aaKnown RBP22.85■■□□□ 1.25
EXOSC3-207ENST00000490516 STRCP1A6NGW2 1772 aa22.85■■□□□ 1.25
EXOSC3-207ENST00000490516 ADGBQ8N7X0 1667 aa22.82■■□□□ 1.24
EXOSC3-207ENST00000490516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.81■■□□□ 1.24
EXOSC3-207ENST00000490516 FBXO31Q5XUX0 539 aaPredicted RBP22.81■■□□□ 1.24
EXOSC3-207ENST00000490516 TNRQ92752 1358 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms