RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 AKNAQ7Z591 1439 aa13.91□□□□□ -0.18
USP39-216ENST00000490193 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP39-216ENST00000490193 NCBP3Q53F19 620 aaKnown RBP13.91□□□□□ -0.18
USP39-216ENST00000490193 FANCAO15360 1455 aa13.91□□□□□ -0.18
USP39-216ENST00000490193 EFCAB5A4FU69 1503 aa13.9□□□□□ -0.18
USP39-216ENST00000490193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.9□□□□□ -0.18
USP39-216ENST00000490193 HNRNPUL2Q1KMD3 747 aaKnown RBP13.9□□□□□ -0.18
USP39-216ENST00000490193 TTC37Q6PGP7 1564 aa13.9□□□□□ -0.18
USP39-216ENST00000490193 SIGLEC1Q9BZZ2 1709 aa13.89□□□□□ -0.19
USP39-216ENST00000490193 ARID4BQ4LE39 1312 aaPredicted RBP13.89□□□□□ -0.19
USP39-216ENST00000490193 MAGI2Q86UL8 1455 aa13.88□□□□□ -0.19
USP39-216ENST00000490193 PLEKHD1A6NEE1 506 aa13.88□□□□□ -0.19
USP39-216ENST00000490193 ZFYVE16Q7Z3T8 1539 aa13.87□□□□□ -0.19
USP39-216ENST00000490193 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.87□□□□□ -0.193e-6■□□□□ 11.3
USP39-216ENST00000490193 POGZQ7Z3K3 1410 aa13.87□□□□□ -0.19
USP39-216ENST00000490193 FER1L4A9Z1Z3 1794 aa13.84□□□□□ -0.19
USP39-216ENST00000490193 YEATS2Q9ULM3 1422 aa13.84□□□□□ -0.19
USP39-216ENST00000490193 HECW1Q76N89 1606 aa13.84□□□□□ -0.19
USP39-216ENST00000490193 ILDR2Q71H61 639 aa13.82□□□□□ -0.2
USP39-216ENST00000490193 PLCH2O75038 1416 aa13.81□□□□□ -0.2
USP39-216ENST00000490193 CDK13Q14004 1512 aaKnown RBP13.81□□□□□ -0.2
USP39-216ENST00000490193 MYO5CQ9NQX4 1742 aa13.8□□□□□ -0.2
USP39-216ENST00000490193 ARHGEF12Q9NZN5 1544 aa13.8□□□□□ -0.2
USP39-216ENST00000490193 SOCS7O14512 581 aa13.79□□□□□ -0.2
USP39-216ENST00000490193 SCAPERQ9BY12 1400 aa13.79□□□□□ -0.2
USP39-216ENST00000490193 PREX1Q8TCU6 1659 aa13.79□□□□□ -0.2
USP39-216ENST00000490193 RANGAP1P46060 587 aaPredicted RBP13.78□□□□□ -0.2
USP39-216ENST00000490193 ATP10AO60312 1499 aa13.77□□□□□ -0.21
USP39-216ENST00000490193 HSPA2P54652 639 aa13.77□□□□□ -0.21
USP39-216ENST00000490193 C9orf84Q5VXU9 1444 aa13.76□□□□□ -0.21
USP39-216ENST00000490193 DISP3Q9P2K9 1392 aa13.76□□□□□ -0.21
USP39-216ENST00000490193 FMN1Q68DA7 1419 aa13.75□□□□□ -0.21
USP39-216ENST00000490193 CERKQ8TCT0 537 aa13.75□□□□□ -0.21
USP39-216ENST00000490193 KDM5CP41229 1560 aa13.75□□□□□ -0.21
USP39-216ENST00000490193 ZNF518AQ6AHZ1 1483 aa13.74□□□□□ -0.21
USP39-216ENST00000490193 KIF14Q15058 1648 aa13.73□□□□□ -0.21
USP39-216ENST00000490193 REREQ9P2R6 1566 aa13.73□□□□□ -0.21
USP39-216ENST00000490193 EFCAB2Q5VUJ9 269 aa13.72□□□□□ -0.21
USP39-216ENST00000490193 SPATA31D1Q6ZQQ2 1576 aa13.71□□□□□ -0.21
USP39-216ENST00000490193 ARHGAP35Q9NRY4 1499 aa13.71□□□□□ -0.21
USP39-216ENST00000490193 SETD1BQ9UPS6 1966 aaKnown RBP13.71□□□□□ -0.22
USP39-216ENST00000490193 STRCQ7RTU9 1775 aa13.71□□□□□ -0.22
USP39-216ENST00000490193 LRRIQ1Q96JM4 1722 aa13.7□□□□□ -0.22
USP39-216ENST00000490193 MLECQ14165 292 aa13.7□□□□□ -0.22
USP39-216ENST00000490193 TROQ12816 1431 aaPredicted RBP13.7□□□□□ -0.22
USP39-216ENST00000490193 DIP2CQ9Y2E4 1556 aa13.7□□□□□ -0.22
USP39-216ENST00000490193 CDK11AQ9UQ88 783 aaPredicted RBP13.69□□□□□ -0.22
USP39-216ENST00000490193 CDC42BPBQ9Y5S2 1711 aa13.68□□□□□ -0.22
USP39-216ENST00000490193 ARHGAP5Q13017 1502 aa13.68□□□□□ -0.22
USP39-216ENST00000490193 ABCA6Q8N139 1617 aa13.67□□□□□ -0.22
USP39-216ENST00000490193 MLH3Q9UHC1 1453 aa13.67□□□□□ -0.22
USP39-216ENST00000490193 CLIP1P30622 1438 aa13.66□□□□□ -0.22
USP39-216ENST00000490193 AGLP35573 1532 aa13.66□□□□□ -0.22
USP39-216ENST00000490193 PREX2Q70Z35 1606 aa13.66□□□□□ -0.22
USP39-216ENST00000490193 C3P01024 1663 aa13.66□□□□□ -0.22
USP39-216ENST00000490193 UHRF1BP1Q6BDS2 1440 aa13.65□□□□□ -0.22
USP39-216ENST00000490193 NPM3O75607 178 aaKnown RBP13.65□□□□□ -0.22
USP39-216ENST00000490193 ABCC1P33527 1531 aa13.64□□□□□ -0.23
USP39-216ENST00000490193 ITSN2Q9NZM3 1697 aa13.63□□□□□ -0.23
USP39-216ENST00000490193 CEBPAP49715 358 aaPredicted RBP13.63□□□□□ -0.23
USP39-216ENST00000490193 AFAP1Q8N556 730 aa13.63□□□□□ -0.23
USP39-216ENST00000490193 PTPRTO14522 1441 aa13.62□□□□□ -0.23
USP39-216ENST00000490193 KIDINS220Q9ULH0 1771 aa13.61□□□□□ -0.23
USP39-216ENST00000490193 UBTFP17480 764 aaKnown RBP13.61□□□□□ -0.23
USP39-216ENST00000490193 ATP1B4Q9UN42 357 aaPredicted RBP13.61□□□□□ -0.23
USP39-216ENST00000490193 CCDC18Q5T9S5 1454 aa13.61□□□□□ -0.23
USP39-216ENST00000490193 CDC42BPAQ5VT25 1732 aa13.6□□□□□ -0.23
USP39-216ENST00000490193 POTEHQ6S545 545 aa13.6□□□□□ -0.23
USP39-216ENST00000490193 TRAPPC8Q9Y2L5 1435 aa13.59□□□□□ -0.23
USP39-216ENST00000490193 MROH2AA6NES4 1674 aa13.59□□□□□ -0.23
USP39-216ENST00000490193 CNTLNQ9NXG0 1405 aa13.58□□□□□ -0.24
USP39-216ENST00000490193 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
USP39-216ENST00000490193 IQSEC2Q5JU85 1478 aa13.57□□□□□ -0.24
USP39-216ENST00000490193 LTBP4Q8N2S1 1624 aa13.57□□□□□ -0.24
USP39-216ENST00000490193 SAMD9LQ8IVG5 1584 aa13.55□□□□□ -0.24
USP39-216ENST00000490193 NCOA1Q15788 1441 aa13.55□□□□□ -0.24
USP39-216ENST00000490193 MYT1LQ9UL68 1186 aa13.54□□□□□ -0.24
USP39-216ENST00000490193 NPATQ14207 1427 aa13.54□□□□□ -0.24
USP39-216ENST00000490193 U3KPZ7 1027 aaPredicted RBP13.53□□□□□ -0.24
USP39-216ENST00000490193 FYCO1Q9BQS8 1478 aa13.53□□□□□ -0.24
USP39-216ENST00000490193 DSG3P32926 999 aa13.52□□□□□ -0.25
USP39-216ENST00000490193 ESF1Q9H501 851 aaKnown RBP13.52□□□□□ -0.25
USP39-216ENST00000490193 ZNF142P52746 1687 aaPredicted RBP13.51□□□□□ -0.25
USP39-216ENST00000490193 PLXNC1O60486 1568 aa13.51□□□□□ -0.25
USP39-216ENST00000490193 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
USP39-216ENST00000490193 CAMSAP1Q5T5Y3 1602 aa13.5□□□□□ -0.25
USP39-216ENST00000490193 INO80Q9ULG1 1556 aaPredicted RBP13.5□□□□□ -0.25
USP39-216ENST00000490193 SYCP2Q9BX26 1530 aa13.5□□□□□ -0.25
USP39-216ENST00000490193 SUPT6HQ7KZ85 1726 aaKnown RBP13.49□□□□□ -0.25
USP39-216ENST00000490193 GPATCH8Q9UKJ3 1502 aaKnown RBP13.49□□□□□ -0.25
USP39-216ENST00000490193 ATP7AQ04656 1500 aa13.48□□□□□ -0.25
USP39-216ENST00000490193 KIAA1107Q9UPP5 1409 aa13.47□□□□□ -0.25
USP39-216ENST00000490193 CLTCQ00610 1675 aaKnown RBP13.47□□□□□ -0.25
USP39-216ENST00000490193 MYO3AQ8NEV4 1616 aa13.47□□□□□ -0.25
USP39-216ENST00000490193 PLA2R1Q13018 1463 aa13.47□□□□□ -0.25
USP39-216ENST00000490193 PLEKHH2Q8IVE3 1493 aa13.47□□□□□ -0.25
USP39-216ENST00000490193 ZMYM3Q14202 1370 aa13.46□□□□□ -0.25
USP39-216ENST00000490193 SPAG9O60271 1321 aaKnown RBP13.45□□□□□ -0.26
USP39-216ENST00000490193 CEP170BQ9Y4F5 1589 aaPredicted RBP13.45□□□□□ -0.26
USP39-216ENST00000490193 ADGBQ8N7X0 1667 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms