RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 KIF3CO14782 793 aa11.3□□□□□ -0.6
HMGN1-218ENST00000490032 HOXB3P14651 431 aaPredicted RBP11.3□□□□□ -0.6
HMGN1-218ENST00000490032 C2orf72A6NCS6 295 aa11.26□□□□□ -0.61
HMGN1-218ENST00000490032 DOK7Q18PE1 504 aa11.25□□□□□ -0.61
HMGN1-218ENST00000490032 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
HMGN1-218ENST00000490032 TMC2Q8TDI7 906 aa11.22□□□□□ -0.61
HMGN1-218ENST00000490032 RIMBP2O15034 1052 aa11.19□□□□□ -0.62
HMGN1-218ENST00000490032 ZNF710Q8N1W2 664 aa11.19□□□□□ -0.62
HMGN1-218ENST00000490032 ZSWIM6Q9HCJ5 1215 aa11.19□□□□□ -0.62
HMGN1-218ENST00000490032 HOXB1P14653 301 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-218ENST00000490032 GPHNQ9NQX3 736 aaPredicted RBP11.18□□□□□ -0.62
HMGN1-218ENST00000490032 MARVELD3Q96A59 401 aa11.17□□□□□ -0.62
HMGN1-218ENST00000490032 PCDH10Q9P2E7 1040 aa11.16□□□□□ -0.62
HMGN1-218ENST00000490032 FOXK1P85037 733 aa11.15□□□□□ -0.62
HMGN1-218ENST00000490032 CRISPLD2Q9H0B8 497 aa11.15□□□□□ -0.62
HMGN1-218ENST00000490032 SLC34A2O95436 690 aa11.14□□□□□ -0.63
HMGN1-218ENST00000490032 EMP3P54852 163 aa11.14□□□□□ -0.63
HMGN1-218ENST00000490032 GPR153Q6NV75 609 aa11.14□□□□□ -0.63
HMGN1-218ENST00000490032 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.12□□□□□ -0.63
HMGN1-218ENST00000490032 DSG2Q14126 1118 aa11.11□□□□□ -0.63
HMGN1-218ENST00000490032 NCKAP5LQ9HCH0 1330 aa11.1□□□□□ -0.63
HMGN1-218ENST00000490032 PLPP6Q8IY26 295 aa11.09□□□□□ -0.63
HMGN1-218ENST00000490032 SPRYD3Q8NCJ5 442 aa11.09□□□□□ -0.63
HMGN1-218ENST00000490032 PDE4AP27815 886 aa11.08□□□□□ -0.64
HMGN1-218ENST00000490032 ARSIQ5FYB1 569 aa11.08□□□□□ -0.64
HMGN1-218ENST00000490032 CDAN1Q8IWY9 1227 aa11.08□□□□□ -0.64
HMGN1-218ENST00000490032 POTEB3A0JP26 581 aa11.06□□□□□ -0.64
HMGN1-218ENST00000490032 FAM205CA6NFA0 338 aa11.06□□□□□ -0.64
HMGN1-218ENST00000490032 POTEBQ6S5H4 581 aa11.06□□□□□ -0.64
HMGN1-218ENST00000490032 HS3ST6Q96QI5 342 aa11.06□□□□□ -0.64
HMGN1-218ENST00000490032 CADPS2Q86UW7 1296 aa11.05□□□□□ -0.64
HMGN1-218ENST00000490032 PTCD2Q8WV60 388 aaKnown RBP11.04□□□□□ -0.64
HMGN1-218ENST00000490032 PCDHGA4Q9Y5G9 962 aa11.04□□□□□ -0.64
HMGN1-218ENST00000490032 MFSD10Q14728 455 aa11.03□□□□□ -0.64
HMGN1-218ENST00000490032 PPP1R15BQ5SWA1 713 aa11.03□□□□□ -0.64
HMGN1-218ENST00000490032 KHSRPQ92945 711 aaKnown RBP eCLIP11.03□□□□□ -0.641e-7■■□□□ 13.3
HMGN1-218ENST00000490032 PAXIP1Q6ZW49 1069 aaPredicted RBP11.02□□□□□ -0.65
HMGN1-218ENST00000490032 ERBB3P21860 1342 aa11.02□□□□□ -0.65
HMGN1-218ENST00000490032 LARP6Q9BRS8 491 aaKnown RBP11.01□□□□□ -0.65
HMGN1-218ENST00000490032 DDX27Q96GQ7 796 aaKnown RBP11□□□□□ -0.65
HMGN1-218ENST00000490032 CFAP44Q96MT7 982 aa10.99□□□□□ -0.65
HMGN1-218ENST00000490032 KDM4FA0A1W2PPD8 638 aa10.98□□□□□ -0.65
HMGN1-218ENST00000490032 ZNF316A6NFI3 1004 aaPredicted RBP10.98□□□□□ -0.65
HMGN1-218ENST00000490032 NUDT7P0C024 238 aa10.98□□□□□ -0.65
HMGN1-218ENST00000490032 VARS2Q5ST30 1063 aaKnown RBP10.97□□□□□ -0.65
HMGN1-218ENST00000490032 OXER1Q8TDS5 423 aa10.97□□□□□ -0.65
HMGN1-218ENST00000490032 TBC1D12O60347 775 aa10.94□□□□□ -0.66
HMGN1-218ENST00000490032 KRTAP3-3Q9BYR6 98 aa10.93□□□□□ -0.66
HMGN1-218ENST00000490032 KRTAP3-2Q9BYR7 98 aa10.93□□□□□ -0.66
HMGN1-218ENST00000490032 ZNF687Q8N1G0 1237 aa10.92□□□□□ -0.66
HMGN1-218ENST00000490032 LHX6Q9UPM6 363 aa10.92□□□□□ -0.66
HMGN1-218ENST00000490032 UPF1Q92900 1129 aaKnown RBP eCLIP10.91□□□□□ -0.66
HMGN1-218ENST00000490032 CAMK2BQ13554 666 aa10.88□□□□□ -0.67
HMGN1-218ENST00000490032 EMILIN3Q9NT22 766 aa10.88□□□□□ -0.67
HMGN1-218ENST00000490032 PSDA5PKW4 1024 aaPredicted RBP10.87□□□□□ -0.67
HMGN1-218ENST00000490032 PLSCR2Q9NRY7 297 aa10.86□□□□□ -0.67
HMGN1-218ENST00000490032 ANO8Q9HCE9 1232 aaPredicted RBP10.84□□□□□ -0.67
HMGN1-218ENST00000490032 MAP3K9P80192 1104 aa10.82□□□□□ -0.68
HMGN1-218ENST00000490032 EVI5O60447 810 aa10.81□□□□□ -0.68
HMGN1-218ENST00000490032 SPNS2Q8IVW8 549 aa10.81□□□□□ -0.68
HMGN1-218ENST00000490032 PBX2P40425 430 aa10.8□□□□□ -0.68
HMGN1-218ENST00000490032 TSHZ2Q9NRE2 1034 aa10.8□□□□□ -0.68
HMGN1-218ENST00000490032 POTEEQ6S8J3 1075 aa10.79□□□□□ -0.68
HMGN1-218ENST00000490032 PPP4R3BQ5MIZ7 849 aa10.78□□□□□ -0.68
HMGN1-218ENST00000490032 FOSBP53539 338 aa10.76□□□□□ -0.69
HMGN1-218ENST00000490032 PLCB2Q00722 1185 aa10.76□□□□□ -0.69
HMGN1-218ENST00000490032 WDR70Q9NW82 654 aa10.76□□□□□ -0.69
HMGN1-218ENST00000490032 E2F4Q16254 413 aa10.75□□□□□ -0.69
HMGN1-218ENST00000490032 DPYSL4O14531 572 aa10.74□□□□□ -0.69
HMGN1-218ENST00000490032 JPH4Q96JJ6 628 aa10.74□□□□□ -0.69
HMGN1-218ENST00000490032 ARHGAP33O14559 1287 aa10.73□□□□□ -0.69
HMGN1-218ENST00000490032 LSM11P83369 360 aaKnown RBP eCLIP10.73□□□□□ -0.69
HMGN1-218ENST00000490032 MMRN1Q13201 1228 aa10.73□□□□□ -0.69
HMGN1-218ENST00000490032 ZNF454Q8N9F8 522 aa10.73□□□□□ -0.69
HMGN1-218ENST00000490032 AXIN2Q9Y2T1 843 aa10.73□□□□□ -0.69
HMGN1-218ENST00000490032 ARIH1Q9Y4X5 557 aaPredicted RBP10.73□□□□□ -0.69
HMGN1-218ENST00000490032 BCL2L12Q9HB09 334 aa10.7□□□□□ -0.7
HMGN1-218ENST00000490032 PTGER2P43116 358 aa10.68□□□□□ -0.7
HMGN1-218ENST00000490032 PDIA6Q15084 440 aa10.68□□□□□ -0.7
HMGN1-218ENST00000490032 ANKRD13DQ6ZTN6 518 aa10.68□□□□□ -0.7
HMGN1-218ENST00000490032 SPDYE16A6NNV3 312 aaPredicted RBP10.67□□□□□ -0.7
HMGN1-218ENST00000490032 PSEN2P49810 448 aa10.67□□□□□ -0.7
HMGN1-218ENST00000490032 ZDHHC16Q969W1 377 aa10.67□□□□□ -0.7
HMGN1-218ENST00000490032 PCDHGA10Q9Y5H3 936 aa10.67□□□□□ -0.7
HMGN1-218ENST00000490032 PHF14O94880 888 aa10.66□□□□□ -0.7
HMGN1-218ENST00000490032 DMRTA1Q5VZB9 504 aa10.66□□□□□ -0.7
HMGN1-218ENST00000490032 ADAM33Q9BZ11 813 aa10.65□□□□□ -0.7
HMGN1-218ENST00000490032 TK2O00142 265 aa10.64□□□□□ -0.71
HMGN1-218ENST00000490032 KCNK17Q96T54 332 aa10.64□□□□□ -0.71
HMGN1-218ENST00000490032 TYW1BQ6NUM6 668 aa10.63□□□□□ -0.71
HMGN1-218ENST00000490032 FBXW7Q969H0 707 aa10.63□□□□□ -0.71
HMGN1-218ENST00000490032 KCNH8Q96L42 1107 aa10.63□□□□□ -0.71
HMGN1-218ENST00000490032 PTPREP23469 700 aa10.62□□□□□ -0.71
HMGN1-218ENST00000490032 ADGRD1Q6QNK2 874 aa10.62□□□□□ -0.71
HMGN1-218ENST00000490032 EPAS1Q99814 870 aa10.62□□□□□ -0.71
HMGN1-218ENST00000490032 SLC4A5Q9BY07 1137 aa10.6□□□□□ -0.71
HMGN1-218ENST00000490032 MYT1LQ9UL68 1186 aa10.6□□□□□ -0.71
HMGN1-218ENST00000490032 DDX12PQ92771 950 aa10.59□□□□□ -0.71
HMGN1-218ENST00000490032 HRO43593 1189 aa10.58□□□□□ -0.72
HMGN1-218ENST00000490032 KCNV2Q8TDN2 545 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms