RNA–Protein interactions for RNA: ENST00000483065.1

R3HDM1-216, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-216ENST00000483065 RYDENQ9NUL5 291 aaKnown RBP8.59□□□□□ -1.03
R3HDM1-216ENST00000483065 ZBTB7CA1YPR0 619 aa8.57□□□□□ -1.04
R3HDM1-216ENST00000483065 LMOD2Q6P5Q4 547 aa8.57□□□□□ -1.04
R3HDM1-216ENST00000483065 RSPH6AQ9H0K4 717 aa8.57□□□□□ -1.04
R3HDM1-216ENST00000483065 ZBTB47Q9UFB7 747 aaPredicted RBP8.57□□□□□ -1.04
R3HDM1-216ENST00000483065 NEUROD2Q15784 382 aa8.56□□□□□ -1.04
R3HDM1-216ENST00000483065 IRX2Q9BZI1 471 aaPredicted RBP8.56□□□□□ -1.04
R3HDM1-216ENST00000483065 PLEKHG5O94827 1062 aa8.55□□□□□ -1.04
R3HDM1-216ENST00000483065 CIZ1Q9ULV3 898 aaPredicted RBP8.55□□□□□ -1.04
R3HDM1-216ENST00000483065 ZMYND15Q9H091 742 aa8.54□□□□□ -1.04
R3HDM1-216ENST00000483065 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.51□□□□□ -1.05
R3HDM1-216ENST00000483065 ERBB3P21860 1342 aa8.51□□□□□ -1.05
R3HDM1-216ENST00000483065 OCEL1Q9H607 264 aa8.5□□□□□ -1.05
R3HDM1-216ENST00000483065 HRCP23327 699 aa8.49□□□□□ -1.05
R3HDM1-216ENST00000483065 WDR70Q9NW82 654 aa8.48□□□□□ -1.05
R3HDM1-216ENST00000483065 PDIA4P13667 645 aaKnown RBP8.47□□□□□ -1.05
R3HDM1-216ENST00000483065 MIER1Q8N108 512 aa8.46□□□□□ -1.06
R3HDM1-216ENST00000483065 GTPBP6O43824 516 aaPredicted RBP8.45□□□□□ -1.06
R3HDM1-216ENST00000483065 HOXB1P14653 301 aaPredicted RBP8.45□□□□□ -1.06
R3HDM1-216ENST00000483065 C3orf67Q6ZVT6 689 aa8.42□□□□□ -1.06
R3HDM1-216ENST00000483065 SGIP1Q9BQI5 828 aa8.42□□□□□ -1.06
R3HDM1-216ENST00000483065 RGS20O76081 388 aa8.41□□□□□ -1.06
R3HDM1-216ENST00000483065 GSE1Q14687 1217 aa8.4□□□□□ -1.06
R3HDM1-216ENST00000483065 VARS2Q5ST30 1063 aaKnown RBP8.4□□□□□ -1.06
R3HDM1-216ENST00000483065 TMEM106CQ9BVX2 250 aa8.4□□□□□ -1.06
R3HDM1-216ENST00000483065 ZNF687Q8N1G0 1237 aa8.39□□□□□ -1.07
R3HDM1-216ENST00000483065 LOC100996750A0A140TA64 210 aa8.38□□□□□ -1.07
R3HDM1-216ENST00000483065 HMGB1P09429 215 aaKnown RBP8.38□□□□□ -1.07
R3HDM1-216ENST00000483065 HOXB3P14651 431 aaPredicted RBP8.38□□□□□ -1.07
R3HDM1-216ENST00000483065 KRTAP4-6Q9BYQ5 205 aa8.38□□□□□ -1.07
R3HDM1-216ENST00000483065 HCSTQ9UBK5 93 aa8.38□□□□□ -1.07
R3HDM1-216ENST00000483065 ZC3H15Q8WU90 426 aaKnown RBP8.37□□□□□ -1.07
R3HDM1-216ENST00000483065 NKX1-1Q15270 411 aaPredicted RBP8.36□□□□□ -1.07
R3HDM1-216ENST00000483065 ARID3AQ99856 593 aa8.36□□□□□ -1.07
R3HDM1-216ENST00000483065 PCDHB13Q9Y5F0 798 aa8.36□□□□□ -1.07
R3HDM1-216ENST00000483065 RIOK3O14730 519 aaKnown RBP8.35□□□□□ -1.07
R3HDM1-216ENST00000483065 STK25O00506 426 aa8.33□□□□□ -1.08
R3HDM1-216ENST00000483065 ANKRD13DQ6ZTN6 518 aa8.33□□□□□ -1.08
R3HDM1-216ENST00000483065 SLC24A3Q9HC58 644 aa8.33□□□□□ -1.08
R3HDM1-216ENST00000483065 VGFO15240 615 aaPredicted RBP8.31□□□□□ -1.08
R3HDM1-216ENST00000483065 SMYD5Q6GMV2 418 aa8.31□□□□□ -1.08
R3HDM1-216ENST00000483065 KCNV2Q8TDN2 545 aa8.31□□□□□ -1.08
R3HDM1-216ENST00000483065 ZNF710Q8N1W2 664 aa8.3□□□□□ -1.08
R3HDM1-216ENST00000483065 IFNL1Q8IU54 200 aa8.29□□□□□ -1.08
R3HDM1-216ENST00000483065 SHROOM4Q9ULL8 1493 aa8.28□□□□□ -1.08
R3HDM1-216ENST00000483065 Q6ZNB5 142 aa8.28□□□□□ -1.08
R3HDM1-216ENST00000483065 KCTD17Q8N5Z5 321 aa8.28□□□□□ -1.08
R3HDM1-216ENST00000483065 ARHGEF1Q92888 912 aaKnown RBP8.28□□□□□ -1.08
R3HDM1-216ENST00000483065 FLIIQ13045 1269 aa8.25□□□□□ -1.09
R3HDM1-216ENST00000483065 L3MBTL3Q96JM7 780 aaPredicted RBP8.25□□□□□ -1.09
R3HDM1-216ENST00000483065 APBB1O00213 710 aa8.24□□□□□ -1.09
R3HDM1-216ENST00000483065 RASEFQ8IZ41 740 aa8.24□□□□□ -1.09
R3HDM1-216ENST00000483065 PDCD7Q8N8D1 485 aaKnown RBP8.24□□□□□ -1.09
R3HDM1-216ENST00000483065 RNF25Q96BH1 459 aaPredicted RBP8.24□□□□□ -1.09
R3HDM1-216ENST00000483065 ZMYND10O75800 440 aa8.23□□□□□ -1.09
R3HDM1-216ENST00000483065 AK7Q96M32 723 aa8.21□□□□□ -1.1
R3HDM1-216ENST00000483065 LSM11P83369 360 aaKnown RBP eCLIP8.2□□□□□ -1.1
R3HDM1-216ENST00000483065 STK24Q9Y6E0 443 aa8.2□□□□□ -1.1
R3HDM1-216ENST00000483065 DOK7Q18PE1 504 aa8.19□□□□□ -1.1
R3HDM1-216ENST00000483065 TESPA1A2RU30 521 aaPredicted RBP8.18□□□□□ -1.1
R3HDM1-216ENST00000483065 IL27Q8NEV9 243 aa8.18□□□□□ -1.1
R3HDM1-216ENST00000483065 BARGINQ6ZT62 677 aa8.17□□□□□ -1.1
R3HDM1-216ENST00000483065 TRAIPQ9BWF2 469 aa8.16□□□□□ -1.1
R3HDM1-216ENST00000483065 C1orf115Q9H7X2 142 aa8.16□□□□□ -1.1
R3HDM1-216ENST00000483065 RAD21O60216 631 aa8.15□□□□□ -1.1
R3HDM1-216ENST00000483065 DCAF8Q5TAQ9 597 aa8.15□□□□□ -1.1
R3HDM1-216ENST00000483065 BCL11BQ9C0K0 894 aaPredicted RBP8.15□□□□□ -1.1
R3HDM1-216ENST00000483065 KRI1Q8N9T8 703 aaKnown RBP8.14□□□□□ -1.11
R3HDM1-216ENST00000483065 HSP90B1P14625 803 aaKnown RBP8.13□□□□□ -1.11
R3HDM1-216ENST00000483065 E2F4Q16254 413 aa8.13□□□□□ -1.11
R3HDM1-216ENST00000483065 CHRM1P11229 460 aaPredicted RBP8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 CDK11BP21127 795 aaKnown RBP8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 NECTIN2Q92692 538 aa8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 FAM212AQ96EL1 285 aa8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 KDM4CQ9H3R0 1056 aa8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 CDK11AQ9UQ88 783 aaPredicted RBP8.12□□□□□ -1.11
R3HDM1-216ENST00000483065 ARID3CA6NKF2 412 aa8.11□□□□□ -1.11
R3HDM1-216ENST00000483065 LCE2BO14633 110 aa8.11□□□□□ -1.11
R3HDM1-216ENST00000483065 RIMBP2O15034 1052 aa8.11□□□□□ -1.11
R3HDM1-216ENST00000483065 TMCO4Q5TGY1 634 aa8.1□□□□□ -1.11
R3HDM1-216ENST00000483065 A6NJR5 290 aa8.09□□□□□ -1.11
R3HDM1-216ENST00000483065 SEMA3EO15041 775 aa8.09□□□□□ -1.11
R3HDM1-216ENST00000483065 IFFO2Q5TF58 517 aa8.09□□□□□ -1.11
R3HDM1-216ENST00000483065 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 PATL2C9JE40 543 aaKnown RBP8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 MKRN3Q13064 507 aaKnown RBP8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 CCDC82Q8N4S0 544 aa8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 ZFP91Q96JP5 570 aaPredicted RBP8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 GPBP1L1Q9HC44 474 aaPredicted RBP8.08□□□□□ -1.12
R3HDM1-216ENST00000483065 LOC105371045A0A1W2PR82 267 aa8.07□□□□□ -1.12
R3HDM1-216ENST00000483065 PDE4CQ08493 712 aa8.07□□□□□ -1.12
R3HDM1-216ENST00000483065 EIF5BO60841 1220 aaKnown RBP8.06□□□□□ -1.12
R3HDM1-216ENST00000483065 DDRGK1Q96HY6 314 aa8.06□□□□□ -1.12
R3HDM1-216ENST00000483065 A0A0G2JS52 829 aa8.05□□□□□ -1.12
R3HDM1-216ENST00000483065 AEBP1Q8IUX7 1158 aa8.05□□□□□ -1.12
R3HDM1-216ENST00000483065 SERPINA10Q9UK55 444 aa8.05□□□□□ -1.12
R3HDM1-216ENST00000483065 TRAK2O60296 914 aa8.04□□□□□ -1.12
R3HDM1-216ENST00000483065 CADPS2Q86UW7 1296 aa8.04□□□□□ -1.12
R3HDM1-216ENST00000483065 CCDC97Q96F63 343 aaPredicted RBP8.04□□□□□ -1.12
R3HDM1-216ENST00000483065 ZSWIM6Q9HCJ5 1215 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms