RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 TMC2Q8TDI7 906 aa16.74■□□□□ 0.27
SMC5-203ENST00000475540 TSHZ2Q9NRE2 1034 aa16.74■□□□□ 0.27
SMC5-203ENST00000475540 HAP1P54257 671 aaPredicted RBP16.73■□□□□ 0.27
SMC5-203ENST00000475540 PDE4AP27815 886 aa16.71■□□□□ 0.27
SMC5-203ENST00000475540 TMEM92Q6UXU6 159 aa16.71■□□□□ 0.27
SMC5-203ENST00000475540 CADPS2Q86UW7 1296 aa16.7■□□□□ 0.26
SMC5-203ENST00000475540 C2orf72A6NCS6 295 aa16.68■□□□□ 0.26
SMC5-203ENST00000475540 GPHNQ9NQX3 736 aaPredicted RBP16.67■□□□□ 0.26
SMC5-203ENST00000475540 KIF3CO14782 793 aa16.65■□□□□ 0.26
SMC5-203ENST00000475540 CRISPLD2Q9H0B8 497 aa16.65■□□□□ 0.26
SMC5-203ENST00000475540 NCKAP5LQ9HCH0 1330 aa16.64■□□□□ 0.25
SMC5-203ENST00000475540 LARP6Q9BRS8 491 aaKnown RBP16.63■□□□□ 0.25
SMC5-203ENST00000475540 FOXK1P85037 733 aa16.58■□□□□ 0.24
SMC5-203ENST00000475540 SNPHO15079 494 aa16.56■□□□□ 0.24
SMC5-203ENST00000475540 DDX27Q96GQ7 796 aaKnown RBP16.56■□□□□ 0.24
SMC5-203ENST00000475540 WDR70Q9NW82 654 aa16.56■□□□□ 0.24
SMC5-203ENST00000475540 DSG2Q14126 1118 aa16.55■□□□□ 0.24
SMC5-203ENST00000475540 PPP1R15BQ5SWA1 713 aa16.53■□□□□ 0.24
SMC5-203ENST00000475540 PLPP6Q8IY26 295 aa16.53■□□□□ 0.24
SMC5-203ENST00000475540 MFSD10Q14728 455 aa16.52■□□□□ 0.24
SMC5-203ENST00000475540 DOK7Q18PE1 504 aa16.47■□□□□ 0.23
SMC5-203ENST00000475540 VSIG10Q8N0Z9 540 aa16.47■□□□□ 0.23
SMC5-203ENST00000475540 POTEMA6NI47 508 aa16.45■□□□□ 0.22
SMC5-203ENST00000475540 RIMBP2O15034 1052 aa16.42■□□□□ 0.22
SMC5-203ENST00000475540 HOXB3P14651 431 aaPredicted RBP16.42■□□□□ 0.22
SMC5-203ENST00000475540 ZNF710Q8N1W2 664 aa16.42■□□□□ 0.22
SMC5-203ENST00000475540 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
SMC5-203ENST00000475540 SLC34A2O95436 690 aa16.39■□□□□ 0.21
SMC5-203ENST00000475540 FAM163AQ96GL9 167 aaPredicted RBP16.39■□□□□ 0.21
SMC5-203ENST00000475540 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
SMC5-203ENST00000475540 E2F4Q16254 413 aa16.37■□□□□ 0.21
SMC5-203ENST00000475540 SLC24A1O60721 1099 aa16.35■□□□□ 0.21
SMC5-203ENST00000475540 ZSWIM6Q9HCJ5 1215 aa16.34■□□□□ 0.21
SMC5-203ENST00000475540 TBC1D12O60347 775 aa16.33■□□□□ 0.2
SMC5-203ENST00000475540 CAMK2BQ13554 666 aa16.33■□□□□ 0.2
SMC5-203ENST00000475540 PTCD2Q8WV60 388 aaKnown RBP16.32■□□□□ 0.2
SMC5-203ENST00000475540 ST18O60284 1047 aa16.3■□□□□ 0.2
SMC5-203ENST00000475540 UPF1Q92900 1129 aaKnown RBP eCLIP16.3■□□□□ 0.2
SMC5-203ENST00000475540 PCDHGA4Q9Y5G9 962 aa16.29■□□□□ 0.2
SMC5-203ENST00000475540 OXER1Q8TDS5 423 aa16.28■□□□□ 0.2
SMC5-203ENST00000475540 EMILIN3Q9NT22 766 aa16.28■□□□□ 0.2
SMC5-203ENST00000475540 MAP3K9P80192 1104 aa16.27■□□□□ 0.2
SMC5-203ENST00000475540 ARSIQ5FYB1 569 aa16.27■□□□□ 0.2
SMC5-203ENST00000475540 GPR153Q6NV75 609 aa16.26■□□□□ 0.19
SMC5-203ENST00000475540 HOXB1P14653 301 aaPredicted RBP16.24■□□□□ 0.19
SMC5-203ENST00000475540 P3H3Q8IVL6 736 aa16.23■□□□□ 0.19
SMC5-203ENST00000475540 PCDH10Q9P2E7 1040 aa16.21■□□□□ 0.19
SMC5-203ENST00000475540 KHSRPQ92945 711 aaKnown RBP eCLIP16.19■□□□□ 0.184e-7■■■■□ 22.3
SMC5-203ENST00000475540 DPYSL4O14531 572 aa16.18■□□□□ 0.18
SMC5-203ENST00000475540 KCNV2Q8TDN2 545 aa16.18■□□□□ 0.18
SMC5-203ENST00000475540 NUDT7P0C024 238 aa16.17■□□□□ 0.18
SMC5-203ENST00000475540 ARHGEF1Q92888 912 aaKnown RBP16.17■□□□□ 0.18
SMC5-203ENST00000475540 ARIH1Q9Y4X5 557 aaPredicted RBP16.17■□□□□ 0.18
SMC5-203ENST00000475540 LCE2DQ5TA82 110 aaPredicted RBP16.16■□□□□ 0.18
SMC5-203ENST00000475540 ZNF316A6NFI3 1004 aaPredicted RBP16.14■□□□□ 0.17
SMC5-203ENST00000475540 EVI5O60447 810 aa16.13■□□□□ 0.17
SMC5-203ENST00000475540 MARVELD3Q96A59 401 aa16.13■□□□□ 0.17
SMC5-203ENST00000475540 EMP3P54852 163 aa16.12■□□□□ 0.17
SMC5-203ENST00000475540 SPDYE16A6NNV3 312 aaPredicted RBP16.1■□□□□ 0.17
SMC5-203ENST00000475540 KDM4FA0A1W2PPD8 638 aa16.08■□□□□ 0.16
SMC5-203ENST00000475540 ANO8Q9HCE9 1232 aaPredicted RBP16.08■□□□□ 0.16
SMC5-203ENST00000475540 ERBB3P21860 1342 aa16.07■□□□□ 0.16
SMC5-203ENST00000475540 PDIA6Q15084 440 aa16.05■□□□□ 0.16
SMC5-203ENST00000475540 LHX6Q9UPM6 363 aa16.05■□□□□ 0.16
SMC5-203ENST00000475540 FAM205CA6NFA0 338 aa16.03■□□□□ 0.16
SMC5-203ENST00000475540 PSDA5PKW4 1024 aaPredicted RBP16■□□□□ 0.15
SMC5-203ENST00000475540 PTGER2P43116 358 aa15.97■□□□□ 0.15
SMC5-203ENST00000475540 VARS2Q5ST30 1063 aaKnown RBP15.97■□□□□ 0.15
SMC5-203ENST00000475540 HS3ST6Q96QI5 342 aa15.96■□□□□ 0.15
SMC5-203ENST00000475540 ZNF454Q8N9F8 522 aa15.93■□□□□ 0.14
SMC5-203ENST00000475540 DDX12PQ92771 950 aa15.93■□□□□ 0.14
SMC5-203ENST00000475540 PPP4R3BQ5MIZ7 849 aa15.92■□□□□ 0.14
SMC5-203ENST00000475540 JPH4Q96JJ6 628 aa15.92■□□□□ 0.14
SMC5-203ENST00000475540 FOSBP53539 338 aa15.91■□□□□ 0.14
SMC5-203ENST00000475540 PHF14O94880 888 aa15.9■□□□□ 0.14
SMC5-203ENST00000475540 POTEB3A0JP26 581 aa15.89■□□□□ 0.13
SMC5-203ENST00000475540 GRXCR2A6NFK2 248 aa15.89■□□□□ 0.13
SMC5-203ENST00000475540 SEMA3EO15041 775 aa15.89■□□□□ 0.13
SMC5-203ENST00000475540 POTEBQ6S5H4 581 aa15.89■□□□□ 0.13
SMC5-203ENST00000475540 EPAS1Q99814 870 aa15.88■□□□□ 0.13
SMC5-203ENST00000475540 NBR1Q14596 966 aa15.87■□□□□ 0.13
SMC5-203ENST00000475540 PCDHGA10Q9Y5H3 936 aa15.87■□□□□ 0.13
SMC5-203ENST00000475540 ZNF687Q8N1G0 1237 aa15.86■□□□□ 0.13
SMC5-203ENST00000475540 ZDHHC16Q969W1 377 aa15.86■□□□□ 0.13
SMC5-203ENST00000475540 TYW1BQ6NUM6 668 aa15.85■□□□□ 0.13
SMC5-203ENST00000475540 FBXW7Q969H0 707 aa15.84■□□□□ 0.13
SMC5-203ENST00000475540 MLLT3P42568 568 aaPredicted RBP15.83■□□□□ 0.12
SMC5-203ENST00000475540 SMYD5Q6GMV2 418 aa15.82■□□□□ 0.12
SMC5-203ENST00000475540 TESPA1A2RU30 521 aaPredicted RBP15.81■□□□□ 0.12
SMC5-203ENST00000475540 CDAN1Q8IWY9 1227 aa15.78■□□□□ 0.12
SMC5-203ENST00000475540 OSBPP22059 807 aa15.77■□□□□ 0.12
SMC5-203ENST00000475540 RBM33Q96EV2 1170 aaKnown RBP15.77■□□□□ 0.12
SMC5-203ENST00000475540 ADAM33Q9BZ11 813 aa15.77■□□□□ 0.12
SMC5-203ENST00000475540 BCL2L12Q9HB09 334 aa15.77■□□□□ 0.12
SMC5-203ENST00000475540 KCNH8Q96L42 1107 aa15.76■□□□□ 0.11
SMC5-203ENST00000475540 TULP1O00294 542 aaPredicted RBP15.75■□□□□ 0.11
SMC5-203ENST00000475540 PBX2P40425 430 aa15.75■□□□□ 0.11
SMC5-203ENST00000475540 PTPREP23469 700 aa15.74■□□□□ 0.11
SMC5-203ENST00000475540 ARHGAP33O14559 1287 aa15.73■□□□□ 0.11
SMC5-203ENST00000475540 MAP3K7O43318 606 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms