RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 HECW1Q76N89 1606 aa34.03■■■■□ 3.04
VPS36-203ENST00000475375 UBTFP17480 764 aaKnown RBP34.02■■■■□ 3.04
VPS36-203ENST00000475375 PLCH2O75038 1416 aa34.02■■■■□ 3.04
VPS36-203ENST00000475375 SIGLEC1Q9BZZ2 1709 aa34■■■■□ 3.03
VPS36-203ENST00000475375 EFCAB2Q5VUJ9 269 aa33.95■■■■□ 3.03
VPS36-203ENST00000475375 FMN1Q68DA7 1419 aa33.95■■■■□ 3.02
VPS36-203ENST00000475375 CDK11AQ9UQ88 783 aaPredicted RBP33.94■■■■□ 3.02
VPS36-203ENST00000475375 FER1L4A9Z1Z3 1794 aa33.93■■■■□ 3.02
VPS36-203ENST00000475375 ATP10AO60312 1499 aa33.9■■■■□ 3.02
VPS36-203ENST00000475375 MYO5CQ9NQX4 1742 aa33.89■■■■□ 3.02
VPS36-203ENST00000475375 C9orf84Q5VXU9 1444 aa33.87■■■■□ 3.01
VPS36-203ENST00000475375 ARHGAP35Q9NRY4 1499 aa33.85■■■■□ 3.01
VPS36-203ENST00000475375 MYT1LQ9UL68 1186 aa33.84■■■■□ 3.01
VPS36-203ENST00000475375 KIF14Q15058 1648 aa33.82■■■■□ 3.01
VPS36-203ENST00000475375 ARHGEF12Q9NZN5 1544 aa33.82■■■■□ 3
VPS36-203ENST00000475375 ARHGAP5Q13017 1502 aa33.81■■■■□ 3
VPS36-203ENST00000475375 ZNF518AQ6AHZ1 1483 aa33.8■■■■□ 3
VPS36-203ENST00000475375 CLIP1P30622 1438 aa33.79■■■■□ 3
VPS36-203ENST00000475375 CEBPAP49715 358 aaPredicted RBP33.79■■■■□ 3
VPS36-203ENST00000475375 CERKQ8TCT0 537 aa33.79■■■■□ 3
VPS36-203ENST00000475375 TROQ12816 1431 aaPredicted RBP33.79■■■■□ 3
VPS36-203ENST00000475375 AFAP1Q8N556 730 aa33.77■■■■□ 3
VPS36-203ENST00000475375 PREX1Q8TCU6 1659 aa33.71■■■□□ 2.99
VPS36-203ENST00000475375 KDM5CP41229 1560 aa33.68■■■□□ 2.98
VPS36-203ENST00000475375 UHRF1BP1Q6BDS2 1440 aa33.63■■■□□ 2.97
VPS36-203ENST00000475375 DIP2CQ9Y2E4 1556 aa33.63■■■□□ 2.97
VPS36-203ENST00000475375 LRRIQ1Q96JM4 1722 aa33.62■■■□□ 2.97
VPS36-203ENST00000475375 CHIC1Q5VXU3 224 aa33.61■■■□□ 2.97
VPS36-203ENST00000475375 DMRT2Q9Y5R5 561 aa33.61■■■□□ 2.97
VPS36-203ENST00000475375 ESF1Q9H501 851 aaKnown RBP33.6■■■□□ 2.97
VPS36-203ENST00000475375 CDC42BPBQ9Y5S2 1711 aa33.58■■■□□ 2.97
VPS36-203ENST00000475375 ABCA6Q8N139 1617 aa33.57■■■□□ 2.96
VPS36-203ENST00000475375 MLH3Q9UHC1 1453 aa33.56■■■□□ 2.96
VPS36-203ENST00000475375 REREQ9P2R6 1566 aa33.55■■■□□ 2.96
VPS36-203ENST00000475375 TRAPPC8Q9Y2L5 1435 aa33.55■■■□□ 2.96
VPS36-203ENST00000475375 PREX2Q70Z35 1606 aa33.54■■■□□ 2.96
VPS36-203ENST00000475375 CCDC18Q5T9S5 1454 aa33.54■■■□□ 2.96
VPS36-203ENST00000475375 ABCC1P33527 1531 aa33.53■■■□□ 2.96
VPS36-203ENST00000475375 CASKIN1Q8WXD9 1431 aa33.52■■■□□ 2.96
VPS36-203ENST00000475375 STRCQ7RTU9 1775 aa33.5■■■□□ 2.95
VPS36-203ENST00000475375 SETD1BQ9UPS6 1966 aaKnown RBP33.5■■■□□ 2.95
VPS36-203ENST00000475375 C3P01024 1663 aa33.47■■■□□ 2.95
VPS36-203ENST00000475375 ITSN2Q9NZM3 1697 aa33.47■■■□□ 2.95
VPS36-203ENST00000475375 AGLP35573 1532 aa33.47■■■□□ 2.95
VPS36-203ENST00000475375 ZNF777Q9ULD5 760 aaPredicted RBP33.45■■■□□ 2.95
VPS36-203ENST00000475375 KIDINS220Q9ULH0 1771 aa33.39■■■□□ 2.94
VPS36-203ENST00000475375 CDC42BPAQ5VT25 1732 aa33.39■■■□□ 2.94
VPS36-203ENST00000475375 CNTLNQ9NXG0 1405 aa33.38■■■□□ 2.93
VPS36-203ENST00000475375 PTPRTO14522 1441 aa33.37■■■□□ 2.93
VPS36-203ENST00000475375 FYCO1Q9BQS8 1478 aa33.37■■■□□ 2.93
VPS36-203ENST00000475375 SPAG9O60271 1321 aaKnown RBP33.33■■■□□ 2.93
VPS36-203ENST00000475375 SAMD9LQ8IVG5 1584 aa33.33■■■□□ 2.93
VPS36-203ENST00000475375 DISP3Q9P2K9 1392 aa33.33■■■□□ 2.93
VPS36-203ENST00000475375 SYCP2Q9BX26 1530 aa33.31■■■□□ 2.92
VPS36-203ENST00000475375 HNRNPMP52272 730 aaKnown RBP eCLIP33.3■■■□□ 2.92
VPS36-203ENST00000475375 NCOA1Q15788 1441 aa33.28■■■□□ 2.92
VPS36-203ENST00000475375 GPATCH8Q9UKJ3 1502 aaKnown RBP33.27■■■□□ 2.92
VPS36-203ENST00000475375 CFDP1Q9UEE9 299 aaPredicted RBP33.24■■■□□ 2.91
VPS36-203ENST00000475375 NPATQ14207 1427 aa33.24■■■□□ 2.91
VPS36-203ENST00000475375 ZMYM3Q14202 1370 aa33.23■■■□□ 2.91
VPS36-203ENST00000475375 SUPT6HQ7KZ85 1726 aaKnown RBP33.22■■■□□ 2.91
VPS36-203ENST00000475375 MROH2AA6NES4 1674 aa33.21■■■□□ 2.91
VPS36-203ENST00000475375 CAMSAP1Q5T5Y3 1602 aa33.2■■■□□ 2.91
VPS36-203ENST00000475375 ATP7AQ04656 1500 aa33.2■■■□□ 2.91
VPS36-203ENST00000475375 LTBP4Q8N2S1 1624 aa33.2■■■□□ 2.9
VPS36-203ENST00000475375 CCNB3Q8WWL7 1395 aa33.2■■■□□ 2.9
VPS36-203ENST00000475375 PLEKHH2Q8IVE3 1493 aa33.18■■■□□ 2.9
VPS36-203ENST00000475375 ILDR2Q71H61 639 aa33.17■■■□□ 2.9
VPS36-203ENST00000475375 KIAA1107Q9UPP5 1409 aa33.17■■■□□ 2.9
VPS36-203ENST00000475375 A2MP01023 1474 aa33.15■■■□□ 2.9
VPS36-203ENST00000475375 MTUS2Q5JR59 1369 aa33.15■■■□□ 2.9
VPS36-203ENST00000475375 GGT6Q6P531 493 aa33.15■■■□□ 2.9
VPS36-203ENST00000475375 NCKAP5LQ9HCH0 1330 aa33.14■■■□□ 2.9
VPS36-203ENST00000475375 CLTCQ00610 1675 aaKnown RBP33.13■■■□□ 2.89
VPS36-203ENST00000475375 INO80Q9ULG1 1556 aaPredicted RBP33.12■■■□□ 2.89
VPS36-203ENST00000475375 IQSEC2Q5JU85 1478 aa33.12■■■□□ 2.89
VPS36-203ENST00000475375 PLXNC1O60486 1568 aa33.1■■■□□ 2.89
VPS36-203ENST00000475375 SPATA31D1Q6ZQQ2 1576 aa33.07■■■□□ 2.88
VPS36-203ENST00000475375 MYO3AQ8NEV4 1616 aa33.06■■■□□ 2.88
VPS36-203ENST00000475375 ZNF335Q9H4Z2 1342 aaPredicted RBP33.05■■■□□ 2.88
VPS36-203ENST00000475375 PTPRKQ15262 1439 aa33.04■■■□□ 2.88
VPS36-203ENST00000475375 SOCS7O14512 581 aa33.03■■■□□ 2.88
VPS36-203ENST00000475375 PKD2Q13563 968 aa33.03■■■□□ 2.88
VPS36-203ENST00000475375 ZNF644Q9H582 1327 aaPredicted RBP33.02■■■□□ 2.88
VPS36-203ENST00000475375 ZNF142P52746 1687 aaPredicted RBP33.01■■■□□ 2.88
VPS36-203ENST00000475375 CEP170BQ9Y4F5 1589 aaPredicted RBP33.01■■■□□ 2.88
VPS36-203ENST00000475375 PLA2R1Q13018 1463 aa33■■■□□ 2.87
VPS36-203ENST00000475375 ADGBQ8N7X0 1667 aa32.99■■■□□ 2.87
VPS36-203ENST00000475375 UBAP1LF5GYI3 381 aa32.99■■■□□ 2.87
VPS36-203ENST00000475375 PPP6R1Q9UPN7 881 aa32.99■■■□□ 2.87
VPS36-203ENST00000475375 TIAM1Q13009 1591 aa32.96■■■□□ 2.87
VPS36-203ENST00000475375 TCOF1Q13428 1488 aaKnown RBP32.94■■■□□ 2.86
VPS36-203ENST00000475375 EHBP1L1Q8N3D4 1523 aa32.93■■■□□ 2.86
VPS36-203ENST00000475375 MBD5Q9P267 1494 aa32.92■■■□□ 2.86
VPS36-203ENST00000475375 RTEL1-TNFRSF6BF6WH68 1400 aa32.89■■■□□ 2.86
VPS36-203ENST00000475375 DHX29Q7Z478 1369 aaKnown RBP32.88■■■□□ 2.85
VPS36-203ENST00000475375 A2ML1A8K2U0 1454 aa32.87■■■□□ 2.85
VPS36-203ENST00000475375 CEP162Q5TB80 1403 aa32.86■■■□□ 2.85
VPS36-203ENST00000475375 KIF3BO15066 747 aa32.86■■■□□ 2.85
VPS36-203ENST00000475375 DNMT1P26358 1616 aaKnown RBP32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms