RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 TAF7LQ5H9L4 462 aa9.19□□□□□ -0.94
SMARCE1-208ENST00000474246 TEX14Q8IWB6 1497 aa9.19□□□□□ -0.94
SMARCE1-208ENST00000474246 RGS17Q9UGC6 210 aaPredicted RBP9.17□□□□□ -0.94
SMARCE1-208ENST00000474246 CFTRP13569 1480 aa9.17□□□□□ -0.94
SMARCE1-208ENST00000474246 SPDYE2BA6NHP3 402 aa9.17□□□□□ -0.94
SMARCE1-208ENST00000474246 SPDYE6P0CI01 402 aa9.17□□□□□ -0.94
SMARCE1-208ENST00000474246 SPDYE2Q495Y8 402 aa9.17□□□□□ -0.94
SMARCE1-208ENST00000474246 ABCC8Q09428 1581 aa9.16□□□□□ -0.94
SMARCE1-208ENST00000474246 VASPP50552 380 aaPredicted RBP9.15□□□□□ -0.94
SMARCE1-208ENST00000474246 SENP3-EIF4A1A0A087X0R7 540 aa9.14□□□□□ -0.95
SMARCE1-208ENST00000474246 CCDC9Q9Y3X0 531 aaKnown RBP9.14□□□□□ -0.95
SMARCE1-208ENST00000474246 CEP170Q5SW79 1584 aa9.14□□□□□ -0.95
SMARCE1-208ENST00000474246 PPRC1Q5VV67 1664 aaKnown RBP9.13□□□□□ -0.95
SMARCE1-208ENST00000474246 SSUH2Q9Y2M2 353 aa9.13□□□□□ -0.95
SMARCE1-208ENST00000474246 GLI2P10070 1586 aa9.13□□□□□ -0.95
SMARCE1-208ENST00000474246 TOPBP1Q92547 1522 aa9.12□□□□□ -0.95
SMARCE1-208ENST00000474246 TARBP1Q13395 1621 aaKnown RBP9.12□□□□□ -0.95
SMARCE1-208ENST00000474246 ZCCHC6Q5VYS8 1495 aaKnown RBP9.11□□□□□ -0.95
SMARCE1-208ENST00000474246 KIF21BO75037 1637 aa9.1□□□□□ -0.95
SMARCE1-208ENST00000474246 CFAP43Q8NDM7 1665 aa9.1□□□□□ -0.95
SMARCE1-208ENST00000474246 WDR97A6NE52 1622 aa9.1□□□□□ -0.95
SMARCE1-208ENST00000474246 POTEAQ6S8J7 498 aa9.09□□□□□ -0.95
SMARCE1-208ENST00000474246 ZRANB1Q9UGI0 708 aa9.09□□□□□ -0.95
SMARCE1-208ENST00000474246 TOM1O60784 492 aa9.07□□□□□ -0.96
SMARCE1-208ENST00000474246 IGSF3O75054 1194 aa9.07□□□□□ -0.96
SMARCE1-208ENST00000474246 YY1P25490 414 aa9.07□□□□□ -0.96
SMARCE1-208ENST00000474246 DHX37Q8IY37 1157 aaKnown RBP9.07□□□□□ -0.96
SMARCE1-208ENST00000474246 NBR1Q14596 966 aa9.06□□□□□ -0.96
SMARCE1-208ENST00000474246 IFNLR1Q8IU57 520 aaPredicted RBP9.06□□□□□ -0.96
SMARCE1-208ENST00000474246 KIAA0586Q9BVV6 1533 aa9.05□□□□□ -0.96
SMARCE1-208ENST00000474246 SP7Q8TDD2 431 aaPredicted RBP9.05□□□□□ -0.96
SMARCE1-208ENST00000474246 PKNOX2Q96KN3 472 aa9.05□□□□□ -0.96
SMARCE1-208ENST00000474246 PUS7Q96PZ0 661 aaKnown RBP9.05□□□□□ -0.96
SMARCE1-208ENST00000474246 GRIN2BQ13224 1484 aa9.04□□□□□ -0.96
SMARCE1-208ENST00000474246 PIP4K2BP78356 416 aa9.04□□□□□ -0.96
SMARCE1-208ENST00000474246 TDRD9Q8NDG6 1382 aaKnown RBP9.04□□□□□ -0.96
SMARCE1-208ENST00000474246 MADDQ8WXG6 1647 aa9.03□□□□□ -0.96
SMARCE1-208ENST00000474246 PLB1Q6P1J6 1458 aa9.02□□□□□ -0.96
SMARCE1-208ENST00000474246 SHROOM2Q13796 1616 aa9.02□□□□□ -0.97
SMARCE1-208ENST00000474246 MROH2BQ7Z745 1585 aa9.01□□□□□ -0.97
SMARCE1-208ENST00000474246 STRCQ7RTU9 1775 aa9□□□□□ -0.97
SMARCE1-208ENST00000474246 SETD1AO15047 1707 aaKnown RBP9□□□□□ -0.97
SMARCE1-208ENST00000474246 BCORL1Q5H9F3 1711 aa9□□□□□ -0.97
SMARCE1-208ENST00000474246 ADCY10Q96PN6 1610 aa9□□□□□ -0.97
SMARCE1-208ENST00000474246 ARID4BQ4LE39 1312 aaPredicted RBP8.98□□□□□ -0.97
SMARCE1-208ENST00000474246 STAG3Q9UJ98 1225 aa8.98□□□□□ -0.97
SMARCE1-208ENST00000474246 PRG4Q92954 1404 aaPredicted RBP8.97□□□□□ -0.97
SMARCE1-208ENST00000474246 ZBTB7CA1YPR0 619 aa8.97□□□□□ -0.97
SMARCE1-208ENST00000474246 DNMBPQ6XZF7 1577 aa8.97□□□□□ -0.97
SMARCE1-208ENST00000474246 BCCIPQ9P287 314 aaKnown RBP eCLIP8.96□□□□□ -0.97
SMARCE1-208ENST00000474246 RIMS1Q86UR5 1692 aaKnown RBP8.96□□□□□ -0.97
SMARCE1-208ENST00000474246 PLCD3Q8N3E9 789 aa8.96□□□□□ -0.98
SMARCE1-208ENST00000474246 MIER1Q8N108 512 aa8.94□□□□□ -0.98
SMARCE1-208ENST00000474246 MAP3K4Q9Y6R4 1608 aa8.93□□□□□ -0.98
SMARCE1-208ENST00000474246 CHRDL2Q6WN34 429 aa8.93□□□□□ -0.98
SMARCE1-208ENST00000474246 RBM42Q9BTD8 480 aaKnown RBP8.93□□□□□ -0.98
SMARCE1-208ENST00000474246 NUP160Q12769 1436 aa8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 ASXL2Q76L83 1435 aa8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 FGD1P98174 961 aa8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 ZNF326Q5BKZ1 582 aaKnown RBP8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 POLR3GLQ9BT43 218 aa8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 PREX1Q8TCU6 1659 aa8.92□□□□□ -0.98
SMARCE1-208ENST00000474246 SOGA1O94964 1423 aa8.91□□□□□ -0.98
SMARCE1-208ENST00000474246 BCL11BQ9C0K0 894 aaPredicted RBP8.9□□□□□ -0.98
SMARCE1-208ENST00000474246 POLA1P09884 1462 aaPredicted RBP8.9□□□□□ -0.98
SMARCE1-208ENST00000474246 PAXIP1Q6ZW49 1069 aaPredicted RBP8.89□□□□□ -0.99
SMARCE1-208ENST00000474246 AKT1S1Q96B36 256 aa8.89□□□□□ -0.99
SMARCE1-208ENST00000474246 SETBP1Q9Y6X0 1596 aa8.89□□□□□ -0.99
SMARCE1-208ENST00000474246 C1QTNF8P60827 252 aa8.89□□□□□ -0.99
SMARCE1-208ENST00000474246 UHRF1BP1Q6BDS2 1440 aa8.87□□□□□ -0.99
SMARCE1-208ENST00000474246 SPOCK2Q92563 424 aa8.87□□□□□ -0.99
SMARCE1-208ENST00000474246 GRIN2AQ12879 1464 aa8.87□□□□□ -0.99
SMARCE1-208ENST00000474246 CLEC11AQ9Y240 323 aa8.87□□□□□ -0.99
SMARCE1-208ENST00000474246 PTPRKQ15262 1439 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 CENPBP07199 599 aaPredicted RBP8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 RSPH4AQ5TD94 716 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 RAD54L2Q9Y4B4 1467 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 POGZQ7Z3K3 1410 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 JPH4Q96JJ6 628 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 CFAP44Q96MT7 982 aa8.86□□□□□ -0.99
SMARCE1-208ENST00000474246 EPRSP07814 1512 aaKnown RBP8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 ZNF335Q9H4Z2 1342 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 PKD2Q13563 968 aa8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 REM2Q8IYK8 340 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 SPDYE1Q8NFV5 336 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 LRP5O75197 1615 aa8.85□□□□□ -0.99
SMARCE1-208ENST00000474246 BBXQ8WY36 941 aaPredicted RBP8.84□□□□□ -0.99
SMARCE1-208ENST00000474246 PRDM2Q13029 1718 aa8.84□□□□□ -0.99
SMARCE1-208ENST00000474246 TSHZ2Q9NRE2 1034 aa8.82□□□□□ -1
SMARCE1-208ENST00000474246 PRELPP51888 382 aa8.81□□□□□ -1
SMARCE1-208ENST00000474246 TRIM52Q96A61 297 aa8.81□□□□□ -1
SMARCE1-208ENST00000474246 MAGI3Q5TCQ9 1506 aa8.81□□□□□ -1
SMARCE1-208ENST00000474246 KIAA0556O60303 1618 aa8.8□□□□□ -1
SMARCE1-208ENST00000474246 ABCC2Q92887 1545 aa8.8□□□□□ -1
SMARCE1-208ENST00000474246 ARID3AQ99856 593 aa8.79□□□□□ -1
SMARCE1-208ENST00000474246 PRR29P0C7W0 189 aa8.78□□□□□ -1
SMARCE1-208ENST00000474246 NECTIN2Q92692 538 aa8.78□□□□□ -1
SMARCE1-208ENST00000474246 ARAP3Q8WWN8 1544 aa8.78□□□□□ -1
SMARCE1-208ENST00000474246 NCOA1Q15788 1441 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms