RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 ZSWIM6Q9HCJ5 1215 aa9.54□□□□□ -0.88
SCN1A-205ENST00000473295 DCAF8L2P0C7V8 631 aa9.53□□□□□ -0.88
SCN1A-205ENST00000473295 CDAN1Q8IWY9 1227 aa9.52□□□□□ -0.89
SCN1A-205ENST00000473295 MARVELD3Q96A59 401 aa9.52□□□□□ -0.89
SCN1A-205ENST00000473295 HOXB1P14653 301 aaPredicted RBP9.51□□□□□ -0.89
SCN1A-205ENST00000473295 TMC2Q8TDI7 906 aa9.5□□□□□ -0.89
SCN1A-205ENST00000473295 KIF3CO14782 793 aa9.49□□□□□ -0.89
SCN1A-205ENST00000473295 PPP1R37O75864 691 aa9.49□□□□□ -0.89
SCN1A-205ENST00000473295 AMER1Q5JTC6 1135 aaPredicted RBP9.49□□□□□ -0.89
SCN1A-205ENST00000473295 C2orf72A6NCS6 295 aa9.48□□□□□ -0.89
SCN1A-205ENST00000473295 PLSCR2Q9NRY7 297 aa9.48□□□□□ -0.89
SCN1A-205ENST00000473295 NKX1-1Q15270 411 aaPredicted RBP9.46□□□□□ -0.9
SCN1A-205ENST00000473295 FAM205CA6NFA0 338 aa9.45□□□□□ -0.9
SCN1A-205ENST00000473295 HS3ST6Q96QI5 342 aa9.44□□□□□ -0.9
SCN1A-205ENST00000473295 ERBB3P21860 1342 aa9.42□□□□□ -0.9
SCN1A-205ENST00000473295 GPR153Q6NV75 609 aa9.42□□□□□ -0.9
SCN1A-205ENST00000473295 SLC34A2O95436 690 aa9.41□□□□□ -0.9
SCN1A-205ENST00000473295 GPHNQ9NQX3 736 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-205ENST00000473295 GTPBP6O43824 516 aaPredicted RBP9.38□□□□□ -0.91
SCN1A-205ENST00000473295 FOXK1P85037 733 aa9.38□□□□□ -0.91
SCN1A-205ENST00000473295 ARSIQ5FYB1 569 aa9.37□□□□□ -0.91
SCN1A-205ENST00000473295 POTEB3A0JP26 581 aa9.34□□□□□ -0.91
SCN1A-205ENST00000473295 VARS2Q5ST30 1063 aaKnown RBP9.34□□□□□ -0.91
SCN1A-205ENST00000473295 POTEBQ6S5H4 581 aa9.34□□□□□ -0.91
SCN1A-205ENST00000473295 PLPP6Q8IY26 295 aa9.34□□□□□ -0.91
SCN1A-205ENST00000473295 ZNF316A6NFI3 1004 aaPredicted RBP9.33□□□□□ -0.92
SCN1A-205ENST00000473295 PDE4AP27815 886 aa9.33□□□□□ -0.92
SCN1A-205ENST00000473295 BBXQ8WY36 941 aaPredicted RBP9.33□□□□□ -0.92
SCN1A-205ENST00000473295 PCDHGA4Q9Y5G9 962 aa9.33□□□□□ -0.92
SCN1A-205ENST00000473295 CRISPLD2Q9H0B8 497 aa9.32□□□□□ -0.92
SCN1A-205ENST00000473295 RTN4Q9NQC3 1192 aaKnown RBP9.32□□□□□ -0.92
SCN1A-205ENST00000473295 TBC1D12O60347 775 aa9.31□□□□□ -0.92
SCN1A-205ENST00000473295 DSG2Q14126 1118 aa9.31□□□□□ -0.92
SCN1A-205ENST00000473295 ZNF687Q8N1G0 1237 aa9.31□□□□□ -0.92
SCN1A-205ENST00000473295 PTCD2Q8WV60 388 aaKnown RBP9.31□□□□□ -0.92
SCN1A-205ENST00000473295 NUDT7P0C024 238 aa9.3□□□□□ -0.92
SCN1A-205ENST00000473295 KHSRPQ92945 711 aaKnown RBP eCLIP9.3□□□□□ -0.92
SCN1A-205ENST00000473295 KRTAP3-3Q9BYR6 98 aa9.29□□□□□ -0.92
SCN1A-205ENST00000473295 KRTAP3-2Q9BYR7 98 aa9.29□□□□□ -0.92
SCN1A-205ENST00000473295 PSDA5PKW4 1024 aaPredicted RBP9.28□□□□□ -0.92
SCN1A-205ENST00000473295 SPNS2Q8IVW8 549 aa9.28□□□□□ -0.92
SCN1A-205ENST00000473295 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.28□□□□□ -0.92
SCN1A-205ENST00000473295 PPP1R15BQ5SWA1 713 aa9.27□□□□□ -0.93
SCN1A-205ENST00000473295 LHX6Q9UPM6 363 aa9.25□□□□□ -0.93
SCN1A-205ENST00000473295 NCKAP5LQ9HCH0 1330 aa9.25□□□□□ -0.93
SCN1A-205ENST00000473295 DDX27Q96GQ7 796 aaKnown RBP9.24□□□□□ -0.93
SCN1A-205ENST00000473295 PBX2P40425 430 aa9.23□□□□□ -0.93
SCN1A-205ENST00000473295 LARP6Q9BRS8 491 aaKnown RBP9.23□□□□□ -0.93
SCN1A-205ENST00000473295 MMRN1Q13201 1228 aa9.22□□□□□ -0.93
SCN1A-205ENST00000473295 SPRYD3Q8NCJ5 442 aa9.22□□□□□ -0.93
SCN1A-205ENST00000473295 MFSD10Q14728 455 aa9.21□□□□□ -0.94
SCN1A-205ENST00000473295 OXER1Q8TDS5 423 aa9.21□□□□□ -0.94
SCN1A-205ENST00000473295 KDM4FA0A1W2PPD8 638 aa9.19□□□□□ -0.94
SCN1A-205ENST00000473295 PTGER2P43116 358 aa9.19□□□□□ -0.94
SCN1A-205ENST00000473295 UPF1Q92900 1129 aaKnown RBP eCLIP9.18□□□□□ -0.94
SCN1A-205ENST00000473295 PPP4R3BQ5MIZ7 849 aa9.17□□□□□ -0.94
SCN1A-205ENST00000473295 LSM11P83369 360 aaKnown RBP eCLIP9.14□□□□□ -0.95
SCN1A-205ENST00000473295 CADPS2Q86UW7 1296 aa9.14□□□□□ -0.95
SCN1A-205ENST00000473295 ARHGAP33O14559 1287 aa9.13□□□□□ -0.95
SCN1A-205ENST00000473295 MAP3K9P80192 1104 aa9.13□□□□□ -0.95
SCN1A-205ENST00000473295 KCNH8Q96L42 1107 aa9.13□□□□□ -0.95
SCN1A-205ENST00000473295 ANKRD13DQ6ZTN6 518 aa9.12□□□□□ -0.95
SCN1A-205ENST00000473295 PAXIP1Q6ZW49 1069 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-205ENST00000473295 CFAP44Q96MT7 982 aa9.12□□□□□ -0.95
SCN1A-205ENST00000473295 EVI5O60447 810 aa9.1□□□□□ -0.95
SCN1A-205ENST00000473295 ANO8Q9HCE9 1232 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-205ENST00000473295 MYT1LQ9UL68 1186 aa9.1□□□□□ -0.95
SCN1A-205ENST00000473295 RNF166Q96A37 237 aaPredicted RBP9.09□□□□□ -0.95
SCN1A-205ENST00000473295 CAMK2BQ13554 666 aa9.08□□□□□ -0.96
SCN1A-205ENST00000473295 POTEEQ6S8J3 1075 aa9.08□□□□□ -0.96
SCN1A-205ENST00000473295 ZNF454Q8N9F8 522 aa9.08□□□□□ -0.96
SCN1A-205ENST00000473295 AXIN2Q9Y2T1 843 aa9.08□□□□□ -0.96
SCN1A-205ENST00000473295 JPH4Q96JJ6 628 aa9.07□□□□□ -0.96
SCN1A-205ENST00000473295 EMILIN3Q9NT22 766 aa9.07□□□□□ -0.96
SCN1A-205ENST00000473295 TK2O00142 265 aa9.06□□□□□ -0.96
SCN1A-205ENST00000473295 FOSBP53539 338 aa9.06□□□□□ -0.96
SCN1A-205ENST00000473295 BCL2L12Q9HB09 334 aa9.05□□□□□ -0.96
SCN1A-205ENST00000473295 ADGRD1Q6QNK2 874 aa9.04□□□□□ -0.96
SCN1A-205ENST00000473295 WDR70Q9NW82 654 aa9.04□□□□□ -0.96
SCN1A-205ENST00000473295 PTPREP23469 700 aa9.02□□□□□ -0.97
SCN1A-205ENST00000473295 PSEN2P49810 448 aa9.02□□□□□ -0.97
SCN1A-205ENST00000473295 ZDHHC16Q969W1 377 aa9.02□□□□□ -0.97
SCN1A-205ENST00000473295 KCNK17Q96T54 332 aa9.02□□□□□ -0.97
SCN1A-205ENST00000473295 DMRTA1Q5VZB9 504 aa9□□□□□ -0.97
SCN1A-205ENST00000473295 FBXW7Q969H0 707 aa9□□□□□ -0.97
SCN1A-205ENST00000473295 STAC3Q96MF2 364 aa9□□□□□ -0.97
SCN1A-205ENST00000473295 DPYSL4O14531 572 aa8.99□□□□□ -0.97
SCN1A-205ENST00000473295 PHF14O94880 888 aa8.99□□□□□ -0.97
SCN1A-205ENST00000473295 E2F4Q16254 413 aa8.99□□□□□ -0.97
SCN1A-205ENST00000473295 SLC4A5Q9BY07 1137 aa8.99□□□□□ -0.97
SCN1A-205ENST00000473295 TYW1BQ6NUM6 668 aa8.98□□□□□ -0.97
SCN1A-205ENST00000473295 SPDYE16A6NNV3 312 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-205ENST00000473295 EPAS1Q99814 870 aa8.97□□□□□ -0.97
SCN1A-205ENST00000473295 HRO43593 1189 aa8.96□□□□□ -0.98
SCN1A-205ENST00000473295 ADAM33Q9BZ11 813 aa8.96□□□□□ -0.98
SCN1A-205ENST00000473295 PCDHGA10Q9Y5H3 936 aa8.96□□□□□ -0.98
SCN1A-205ENST00000473295 ARIH1Q9Y4X5 557 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-205ENST00000473295 PDIA6Q15084 440 aa8.94□□□□□ -0.98
SCN1A-205ENST00000473295 VPS9D1Q9Y2B5 631 aa8.94□□□□□ -0.98
SCN1A-205ENST00000473295 PPP1R3GB7ZBB8 358 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms