RNA–Protein interactions for RNA: ENST00000467533.5

HDAC3-203, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 663 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-203ENST00000467533 MAGI2Q86UL8 1455 aa17.77■□□□□ 0.44
HDAC3-203ENST00000467533 UHRF1BP1Q6BDS2 1440 aa17.75■□□□□ 0.43
HDAC3-203ENST00000467533 NUP153P49790 1475 aaKnown RBP17.75■□□□□ 0.43
HDAC3-203ENST00000467533 PRXQ9BXM0 1461 aa17.75■□□□□ 0.43
HDAC3-203ENST00000467533 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.74■□□□□ 0.43
HDAC3-203ENST00000467533 IQSEC2Q5JU85 1478 aa17.7■□□□□ 0.42
HDAC3-203ENST00000467533 CEBPAP49715 358 aaPredicted RBP17.7■□□□□ 0.42
HDAC3-203ENST00000467533 PTPRTO14522 1441 aa17.7■□□□□ 0.42
HDAC3-203ENST00000467533 C9orf84Q5VXU9 1444 aa17.7■□□□□ 0.42
HDAC3-203ENST00000467533 LTBP4Q8N2S1 1624 aa17.69■□□□□ 0.42
HDAC3-203ENST00000467533 ATP10AO60312 1499 aa17.68■□□□□ 0.42
HDAC3-203ENST00000467533 PLEKHD1A6NEE1 506 aa17.66■□□□□ 0.42
HDAC3-203ENST00000467533 SCAPERQ9BY12 1400 aa17.65■□□□□ 0.42
HDAC3-203ENST00000467533 C3P01024 1663 aa17.64■□□□□ 0.42
HDAC3-203ENST00000467533 SETD1BQ9UPS6 1966 aaKnown RBP17.64■□□□□ 0.41
HDAC3-203ENST00000467533 MYO5CQ9NQX4 1742 aa17.6■□□□□ 0.41
HDAC3-203ENST00000467533 PLCH2O75038 1416 aa17.56■□□□□ 0.4
HDAC3-203ENST00000467533 NCOA1Q15788 1441 aa17.56■□□□□ 0.4
HDAC3-203ENST00000467533 DIP2CQ9Y2E4 1556 aa17.55■□□□□ 0.4
HDAC3-203ENST00000467533 RANGAP1P46060 587 aaPredicted RBP17.55■□□□□ 0.4
HDAC3-203ENST00000467533 CDK13Q14004 1512 aaKnown RBP17.55■□□□□ 0.4
HDAC3-203ENST00000467533 ZNF518AQ6AHZ1 1483 aa17.55■□□□□ 0.4
HDAC3-203ENST00000467533 MED1Q15648 1581 aaPredicted RBP17.54■□□□□ 0.4
HDAC3-203ENST00000467533 UBAP1LF5GYI3 381 aa17.54■□□□□ 0.4
HDAC3-203ENST00000467533 KDM5CP41229 1560 aa17.53■□□□□ 0.4
HDAC3-203ENST00000467533 REREQ9P2R6 1566 aa17.53■□□□□ 0.4
HDAC3-203ENST00000467533 CAMSAP1Q5T5Y3 1602 aa17.52■□□□□ 0.4
HDAC3-203ENST00000467533 ABCA6Q8N139 1617 aa17.52■□□□□ 0.4
HDAC3-203ENST00000467533 MYT1LQ9UL68 1186 aa17.51■□□□□ 0.39
HDAC3-203ENST00000467533 TRAPPC8Q9Y2L5 1435 aa17.51■□□□□ 0.39
HDAC3-203ENST00000467533 ESF1Q9H501 851 aaKnown RBP17.5■□□□□ 0.39
HDAC3-203ENST00000467533 EFCAB2Q5VUJ9 269 aa17.48■□□□□ 0.39
HDAC3-203ENST00000467533 SUPT6HQ7KZ85 1726 aaKnown RBP17.47■□□□□ 0.39
HDAC3-203ENST00000467533 AGLP35573 1532 aa17.47■□□□□ 0.39
HDAC3-203ENST00000467533 ARHGAP5Q13017 1502 aa17.47■□□□□ 0.39
HDAC3-203ENST00000467533 ZNF335Q9H4Z2 1342 aaPredicted RBP17.47■□□□□ 0.39
HDAC3-203ENST00000467533 KIF14Q15058 1648 aa17.46■□□□□ 0.39
HDAC3-203ENST00000467533 MROH2AA6NES4 1674 aa17.44■□□□□ 0.38
HDAC3-203ENST00000467533 AFAP1Q8N556 730 aa17.43■□□□□ 0.38
HDAC3-203ENST00000467533 CNTLNQ9NXG0 1405 aa17.43■□□□□ 0.38
HDAC3-203ENST00000467533 ZNF142P52746 1687 aaPredicted RBP17.42■□□□□ 0.38
HDAC3-203ENST00000467533 MYO3AQ8NEV4 1616 aa17.42■□□□□ 0.38
HDAC3-203ENST00000467533 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
HDAC3-203ENST00000467533 NCKAP5LQ9HCH0 1330 aa17.41■□□□□ 0.38
HDAC3-203ENST00000467533 MLH3Q9UHC1 1453 aa17.4■□□□□ 0.38
HDAC3-203ENST00000467533 NPATQ14207 1427 aa17.39■□□□□ 0.38
HDAC3-203ENST00000467533 CSRNP3Q8WYN3 585 aa17.39■□□□□ 0.37
HDAC3-203ENST00000467533 ITSN2Q9NZM3 1697 aa17.39■□□□□ 0.37
HDAC3-203ENST00000467533 PLA2R1Q13018 1463 aa17.37■□□□□ 0.37
HDAC3-203ENST00000467533 HSPA1LP34931 641 aa17.37■□□□□ 0.37
HDAC3-203ENST00000467533 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
HDAC3-203ENST00000467533 CDC42BPBQ9Y5S2 1711 aa17.37■□□□□ 0.37
HDAC3-203ENST00000467533 ABCC1P33527 1531 aa17.36■□□□□ 0.37
HDAC3-203ENST00000467533 CEP170BQ9Y4F5 1589 aaPredicted RBP17.36■□□□□ 0.37
HDAC3-203ENST00000467533 KIDINS220Q9ULH0 1771 aa17.35■□□□□ 0.37
HDAC3-203ENST00000467533 PIP4K2BP78356 416 aa17.35■□□□□ 0.37
HDAC3-203ENST00000467533 CLTCQ00610 1675 aaKnown RBP17.34■□□□□ 0.37
HDAC3-203ENST00000467533 TCOF1Q13428 1488 aaKnown RBP17.34■□□□□ 0.37
HDAC3-203ENST00000467533 PREX2Q70Z35 1606 aa17.34■□□□□ 0.37
HDAC3-203ENST00000467533 ATP1B4Q9UN42 357 aaPredicted RBP17.34■□□□□ 0.37
HDAC3-203ENST00000467533 CLIP1P30622 1438 aa17.33■□□□□ 0.36
HDAC3-203ENST00000467533 PKD2Q13563 968 aa17.33■□□□□ 0.36
HDAC3-203ENST00000467533 TROQ12816 1431 aaPredicted RBP17.32■□□□□ 0.36
HDAC3-203ENST00000467533 CDK11AQ9UQ88 783 aaPredicted RBP17.32■□□□□ 0.36
HDAC3-203ENST00000467533 PPP6R1Q9UPN7 881 aa17.31■□□□□ 0.36
HDAC3-203ENST00000467533 POLR1AO95602 1720 aaPredicted RBP17.3■□□□□ 0.36
HDAC3-203ENST00000467533 ZMYM3Q14202 1370 aa17.29■□□□□ 0.36
HDAC3-203ENST00000467533 CPS1P31327 1500 aa17.29■□□□□ 0.36
HDAC3-203ENST00000467533 TOM1O60784 492 aa17.28■□□□□ 0.36
HDAC3-203ENST00000467533 FMN1Q68DA7 1419 aa17.28■□□□□ 0.36
HDAC3-203ENST00000467533 LRRIQ1Q96JM4 1722 aa17.27■□□□□ 0.36
HDAC3-203ENST00000467533 EEA1Q15075 1411 aa17.25■□□□□ 0.35
HDAC3-203ENST00000467533 SAMD9LQ8IVG5 1584 aa17.24■□□□□ 0.35
HDAC3-203ENST00000467533 PTPRKQ15262 1439 aa17.23■□□□□ 0.35
HDAC3-203ENST00000467533 DNMT1P26358 1616 aaKnown RBP17.22■□□□□ 0.35
HDAC3-203ENST00000467533 CDC42BPAQ5VT25 1732 aa17.22■□□□□ 0.35
HDAC3-203ENST00000467533 NEURL4Q96JN8 1562 aa17.21■□□□□ 0.35
HDAC3-203ENST00000467533 SHANK2Q9UPX8 1470 aa17.21■□□□□ 0.35
HDAC3-203ENST00000467533 PLXNC1O60486 1568 aa17.2■□□□□ 0.34
HDAC3-203ENST00000467533 A2ML1A8K2U0 1454 aa17.2■□□□□ 0.34
HDAC3-203ENST00000467533 ALKQ9UM73 1620 aa17.18■□□□□ 0.34
HDAC3-203ENST00000467533 ATP7AQ04656 1500 aa17.18■□□□□ 0.34
HDAC3-203ENST00000467533 SYCP2Q9BX26 1530 aa17.18■□□□□ 0.34
HDAC3-203ENST00000467533 SENP3Q9H4L4 574 aaPredicted RBP17.17■□□□□ 0.34
HDAC3-203ENST00000467533 INO80Q9ULG1 1556 aaPredicted RBP17.16■□□□□ 0.34
HDAC3-203ENST00000467533 ARHGAP35Q9NRY4 1499 aa17.16■□□□□ 0.34
HDAC3-203ENST00000467533 VWDEQ8N2E2 1590 aa17.15■□□□□ 0.34
HDAC3-203ENST00000467533 A2MP01023 1474 aa17.15■□□□□ 0.34
HDAC3-203ENST00000467533 SPAG9O60271 1321 aaKnown RBP17.15■□□□□ 0.34
HDAC3-203ENST00000467533 RNF17Q9BXT8 1623 aaKnown RBP17.14■□□□□ 0.33
HDAC3-203ENST00000467533 GGT6Q6P531 493 aa17.12■□□□□ 0.33
HDAC3-203ENST00000467533 ADGBQ8N7X0 1667 aa17.12■□□□□ 0.33
HDAC3-203ENST00000467533 ZNF777Q9ULD5 760 aaPredicted RBP17.11■□□□□ 0.33
HDAC3-203ENST00000467533 CCDC18Q5T9S5 1454 aa17.1■□□□□ 0.33
HDAC3-203ENST00000467533 SYNMO15061 1565 aa17.1■□□□□ 0.33
HDAC3-203ENST00000467533 IQGAP1P46940 1657 aa17.07■□□□□ 0.32
HDAC3-203ENST00000467533 EHMT2Q96KQ7 1210 aa17.07■□□□□ 0.32
HDAC3-203ENST00000467533 STRCP1A6NGW2 1772 aa17.07■□□□□ 0.32
HDAC3-203ENST00000467533 DEPDC5O75140 1603 aa17.07■□□□□ 0.32
HDAC3-203ENST00000467533 TNRQ92752 1358 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms