RNA–Protein interactions for RNA: ENST00000467533.5

HDAC3-203, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 663 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-203ENST00000467533 NISCHQ9Y2I1 1504 aa26.63■■□□□ 1.85
HDAC3-203ENST00000467533 ABCC9O60706 1549 aa24.88■■□□□ 1.57
HDAC3-203ENST00000467533 CCDC180Q9P1Z9 1646 aa24.29■■□□□ 1.48
HDAC3-203ENST00000467533 DNAJC5BQ9UF47 199 aa23.82■■□□□ 1.4
HDAC3-203ENST00000467533 RB1CC1Q8TDY2 1594 aa23.42■■□□□ 1.34
HDAC3-203ENST00000467533 NACADO15069 1562 aa23.06■■□□□ 1.28
HDAC3-203ENST00000467533 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
HDAC3-203ENST00000467533 UNC13AQ9UPW8 1703 aa22.94■■□□□ 1.26
HDAC3-203ENST00000467533 DCAF8L2P0C7V8 631 aa22.74■■□□□ 1.23
HDAC3-203ENST00000467533 BICRAQ9NZM4 1560 aa22.72■■□□□ 1.23
HDAC3-203ENST00000467533 CECR2Q9BXF3 1484 aa22.47■■□□□ 1.19
HDAC3-203ENST00000467533 MYO15BQ96JP2 1530 aa22.47■■□□□ 1.19
HDAC3-203ENST00000467533 CC2D2AQ9P2K1 1620 aa22.46■■□□□ 1.19
HDAC3-203ENST00000467533 DNAJC5Q9H3Z4 198 aa22.38■■□□□ 1.17
HDAC3-203ENST00000467533 SHROOM4Q9ULL8 1493 aa22.35■■□□□ 1.17
HDAC3-203ENST00000467533 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
HDAC3-203ENST00000467533 SCRIBQ14160 1630 aa22.09■■□□□ 1.13
HDAC3-203ENST00000467533 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
HDAC3-203ENST00000467533 DCAF1Q9Y4B6 1507 aa21.95■■□□□ 1.1
HDAC3-203ENST00000467533 CUX2O14529 1486 aa21.72■■□□□ 1.07
HDAC3-203ENST00000467533 ERCC6Q03468 1493 aa21.56■■□□□ 1.04
HDAC3-203ENST00000467533 NCAPD3P42695 1498 aa21.23■□□□□ 0.99
HDAC3-203ENST00000467533 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
HDAC3-203ENST00000467533 NESP48681 1621 aa21.18■□□□□ 0.98
HDAC3-203ENST00000467533 THOC2Q8NI27 1593 aaKnown RBP21.16■□□□□ 0.98
HDAC3-203ENST00000467533 ATAD2BQ9ULI0 1458 aa21.1■□□□□ 0.97
HDAC3-203ENST00000467533 HMGXB3Q12766 1538 aa21.09■□□□□ 0.97
HDAC3-203ENST00000467533 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
HDAC3-203ENST00000467533 SMARCA4P51532 1647 aa20.97■□□□□ 0.95
HDAC3-203ENST00000467533 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
HDAC3-203ENST00000467533 LAMC3Q9Y6N6 1575 aa20.95■□□□□ 0.94
HDAC3-203ENST00000467533 BAZ1BQ9UIG0 1483 aaKnown RBP20.9■□□□□ 0.94
HDAC3-203ENST00000467533 PDS5BQ9NTI5 1447 aa20.8■□□□□ 0.92
HDAC3-203ENST00000467533 BAZ1AQ9NRL2 1556 aaPredicted RBP20.77■□□□□ 0.92
HDAC3-203ENST00000467533 PEG3Q9GZU2 1588 aa20.73■□□□□ 0.91
HDAC3-203ENST00000467533 MRC2Q9UBG0 1479 aa20.7■□□□□ 0.9
HDAC3-203ENST00000467533 WDR62O43379 1518 aa20.68■□□□□ 0.9
HDAC3-203ENST00000467533 CADPSQ9ULU8 1353 aa20.56■□□□□ 0.88
HDAC3-203ENST00000467533 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
HDAC3-203ENST00000467533 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
HDAC3-203ENST00000467533 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
HDAC3-203ENST00000467533 RIMBP3CA6NJZ7 1639 aa20.48■□□□□ 0.87
HDAC3-203ENST00000467533 RIMBP3BA6NNM3 1639 aa20.48■□□□□ 0.87
HDAC3-203ENST00000467533 RIMBP3Q9UFD9 1639 aa20.48■□□□□ 0.87
HDAC3-203ENST00000467533 FANCD2Q9BXW9 1451 aa20.38■□□□□ 0.85
HDAC3-203ENST00000467533 ARHGEF11O15085 1522 aa20.31■□□□□ 0.84
HDAC3-203ENST00000467533 WIZO95785 1651 aa20.29■□□□□ 0.84
HDAC3-203ENST00000467533 URB2Q14146 1524 aaKnown RBP20.26■□□□□ 0.83
HDAC3-203ENST00000467533 CFTRP13569 1480 aa20.2■□□□□ 0.82
HDAC3-203ENST00000467533 TRHP20396 242 aaPredicted RBP20.16■□□□□ 0.82
HDAC3-203ENST00000467533 CYB5RLQ6IPT4 315 aa20.12■□□□□ 0.81
HDAC3-203ENST00000467533 ZNF608Q9ULD9 1512 aaPredicted RBP20.11■□□□□ 0.81
HDAC3-203ENST00000467533 PRDM2Q13029 1718 aa20.1■□□□□ 0.81
HDAC3-203ENST00000467533 AEBP2Q6ZN18 517 aaPredicted RBP20.09■□□□□ 0.81
HDAC3-203ENST00000467533 IFT140Q96RY7 1462 aa20.07■□□□□ 0.8
HDAC3-203ENST00000467533 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
HDAC3-203ENST00000467533 CHD1O14646 1710 aa20.05■□□□□ 0.8
HDAC3-203ENST00000467533 EIF4G3O43432 1585 aaKnown RBP20.04■□□□□ 0.8
HDAC3-203ENST00000467533 TOP2AP11388 1531 aaKnown RBP19.97■□□□□ 0.79
HDAC3-203ENST00000467533 RSF1Q96T23 1441 aaPredicted RBP19.92■□□□□ 0.78
HDAC3-203ENST00000467533 TOPBP1Q92547 1522 aa19.92■□□□□ 0.78
HDAC3-203ENST00000467533 FBLN2P98095 1184 aa19.83■□□□□ 0.77
HDAC3-203ENST00000467533 DNMBPQ6XZF7 1577 aa19.82■□□□□ 0.76
HDAC3-203ENST00000467533 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.761e-6■■■■□ 23.3
HDAC3-203ENST00000467533 TARBP1Q13395 1621 aaKnown RBP19.81■□□□□ 0.76
HDAC3-203ENST00000467533 ABCC8Q09428 1581 aa19.81■□□□□ 0.76
HDAC3-203ENST00000467533 CLASP1Q7Z460 1538 aa19.73■□□□□ 0.75
HDAC3-203ENST00000467533 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
HDAC3-203ENST00000467533 SYNJ1O43426 1573 aa19.69■□□□□ 0.74
HDAC3-203ENST00000467533 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
HDAC3-203ENST00000467533 SNAPC4Q5SXM2 1469 aa19.66■□□□□ 0.74
HDAC3-203ENST00000467533 RAD54L2Q9Y4B4 1467 aa19.6■□□□□ 0.73
HDAC3-203ENST00000467533 WDR97A6NE52 1622 aa19.58■□□□□ 0.73
HDAC3-203ENST00000467533 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
HDAC3-203ENST00000467533 GAPVD1Q14C86 1478 aa19.55■□□□□ 0.72
HDAC3-203ENST00000467533 MAGI1Q96QZ7 1491 aaPredicted RBP19.55■□□□□ 0.72
HDAC3-203ENST00000467533 CHMP7Q8WUX9 453 aaPredicted RBP19.55■□□□□ 0.72
HDAC3-203ENST00000467533 SOGA1O94964 1423 aa19.53■□□□□ 0.72
HDAC3-203ENST00000467533 SYNJ2O15056 1496 aa19.49■□□□□ 0.71
HDAC3-203ENST00000467533 GRIN2BQ13224 1484 aa19.48■□□□□ 0.71
HDAC3-203ENST00000467533 FGD5Q6ZNL6 1462 aa19.47■□□□□ 0.71
HDAC3-203ENST00000467533 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
HDAC3-203ENST00000467533 KIF13AQ9H1H9 1805 aa19.38■□□□□ 0.69
HDAC3-203ENST00000467533 ERCC6L2Q5T890 1561 aa19.37■□□□□ 0.69
HDAC3-203ENST00000467533 CUX1P39880 1505 aa19.33■□□□□ 0.68
HDAC3-203ENST00000467533 CEP170Q5SW79 1584 aa19.28■□□□□ 0.68
HDAC3-203ENST00000467533 ABCA5Q8WWZ7 1642 aa19.27■□□□□ 0.68
HDAC3-203ENST00000467533 ILDR1Q86SU0 546 aaPredicted RBP19.26■□□□□ 0.67
HDAC3-203ENST00000467533 GRIN2AQ12879 1464 aa19.23■□□□□ 0.67
HDAC3-203ENST00000467533 SHROOM2Q13796 1616 aa19.22■□□□□ 0.67
HDAC3-203ENST00000467533 ADAMTS12P58397 1594 aa19.19■□□□□ 0.66
HDAC3-203ENST00000467533 ABCA10Q8WWZ4 1543 aa19.18■□□□□ 0.66
HDAC3-203ENST00000467533 NUP160Q12769 1436 aa19.17■□□□□ 0.66
HDAC3-203ENST00000467533 KDM6BO15054 1643 aa19.14■□□□□ 0.66
HDAC3-203ENST00000467533 KDM4FA0A1W2PPD8 638 aa19.11■□□□□ 0.65
HDAC3-203ENST00000467533 DIP2BQ9P265 1576 aa19.1■□□□□ 0.65
HDAC3-203ENST00000467533 ABCC10Q5T3U5 1492 aa19.1■□□□□ 0.65
HDAC3-203ENST00000467533 FAM69CQ0P6D2 419 aa19.09■□□□□ 0.65
HDAC3-203ENST00000467533 MAPKBP1O60336 1514 aa19.05■□□□□ 0.64
HDAC3-203ENST00000467533 TSPOAP1O95153 1857 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms