RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SCUBE2Q9NQ36 999 aa9.87□□□□□ -0.83
VPS41-211ENST00000466017 MAMSTRQ6ZN01 415 aa9.85□□□□□ -0.83
VPS41-211ENST00000466017 LCE2DQ5TA82 110 aaPredicted RBP9.84□□□□□ -0.83
VPS41-211ENST00000466017 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.83□□□□□ -0.84
VPS41-211ENST00000466017 BBXQ8WY36 941 aaPredicted RBP9.82□□□□□ -0.84
VPS41-211ENST00000466017 C3orf67Q6ZVT6 689 aa9.8□□□□□ -0.84
VPS41-211ENST00000466017 CADPS2Q86UW7 1296 aa9.78□□□□□ -0.84
VPS41-211ENST00000466017 G3V3G9 751 aa9.76□□□□□ -0.85
VPS41-211ENST00000466017 C2orf72A6NCS6 295 aa9.75□□□□□ -0.85
VPS41-211ENST00000466017 KIF3CO14782 793 aa9.75□□□□□ -0.85
VPS41-211ENST00000466017 FAM163AQ96GL9 167 aaPredicted RBP9.75□□□□□ -0.85
VPS41-211ENST00000466017 CECR2Q9BXF3 1484 aa9.74□□□□□ -0.85
VPS41-211ENST00000466017 HOXB3P14651 431 aaPredicted RBP9.74□□□□□ -0.85
VPS41-211ENST00000466017 PAXIP1Q6ZW49 1069 aaPredicted RBP9.74□□□□□ -0.85
VPS41-211ENST00000466017 BAZ1AQ9NRL2 1556 aaPredicted RBP9.73□□□□□ -0.85
VPS41-211ENST00000466017 CFAP44Q96MT7 982 aa9.73□□□□□ -0.85
VPS41-211ENST00000466017 RSF1Q96T23 1441 aaPredicted RBP9.72□□□□□ -0.85
VPS41-211ENST00000466017 NCKAP5LQ9HCH0 1330 aa9.71□□□□□ -0.86
VPS41-211ENST00000466017 ST18O60284 1047 aa9.7□□□□□ -0.86
VPS41-211ENST00000466017 SPRYD3Q8NCJ5 442 aa9.69□□□□□ -0.86
VPS41-211ENST00000466017 MROH2BQ7Z745 1585 aa9.67□□□□□ -0.86
VPS41-211ENST00000466017 SMARCA4P51532 1647 aa9.66□□□□□ -0.86
VPS41-211ENST00000466017 DSG2Q14126 1118 aa9.65□□□□□ -0.86
VPS41-211ENST00000466017 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.65□□□□□ -0.86
VPS41-211ENST00000466017 SUPT5HO00267 1087 aaKnown RBP9.64□□□□□ -0.87
VPS41-211ENST00000466017 KHSRPQ92945 711 aaKnown RBP eCLIP9.64□□□□□ -0.873e-6■□□□□ 11.2
VPS41-211ENST00000466017 CRISPLD2Q9H0B8 497 aa9.64□□□□□ -0.87
VPS41-211ENST00000466017 GPHNQ9NQX3 736 aaPredicted RBP9.64□□□□□ -0.87
VPS41-211ENST00000466017 PEG3Q9GZU2 1588 aa9.63□□□□□ -0.87
VPS41-211ENST00000466017 MARVELD3Q96A59 401 aa9.63□□□□□ -0.87
VPS41-211ENST00000466017 TSHZ2Q9NRE2 1034 aa9.63□□□□□ -0.87
VPS41-211ENST00000466017 RYDENQ9NUL5 291 aaKnown RBP9.62□□□□□ -0.87
VPS41-211ENST00000466017 TMC2Q8TDI7 906 aa9.61□□□□□ -0.87
VPS41-211ENST00000466017 EIF4G1Q04637 1599 aaKnown RBP9.61□□□□□ -0.87
VPS41-211ENST00000466017 POTEB3A0JP26 581 aa9.6□□□□□ -0.87
VPS41-211ENST00000466017 POTEBQ6S5H4 581 aa9.6□□□□□ -0.87
VPS41-211ENST00000466017 PLPP6Q8IY26 295 aa9.6□□□□□ -0.87
VPS41-211ENST00000466017 FOXK1P85037 733 aa9.59□□□□□ -0.87
VPS41-211ENST00000466017 LARP6Q9BRS8 491 aaKnown RBP9.59□□□□□ -0.87
VPS41-211ENST00000466017 GPR153Q6NV75 609 aa9.58□□□□□ -0.88
VPS41-211ENST00000466017 ATAD2BQ9ULI0 1458 aa9.58□□□□□ -0.88
VPS41-211ENST00000466017 POTEMA6NI47 508 aa9.57□□□□□ -0.88
VPS41-211ENST00000466017 ARSIQ5FYB1 569 aa9.57□□□□□ -0.88
VPS41-211ENST00000466017 POTEGQ6S5H5 508 aa9.57□□□□□ -0.88
VPS41-211ENST00000466017 NCAPD3P42695 1498 aa9.57□□□□□ -0.88
VPS41-211ENST00000466017 SMARCA2P51531 1590 aa9.57□□□□□ -0.88
VPS41-211ENST00000466017 SNPHO15079 494 aa9.55□□□□□ -0.88
VPS41-211ENST00000466017 WIZO95785 1651 aa9.55□□□□□ -0.88
VPS41-211ENST00000466017 PDE4AP27815 886 aa9.54□□□□□ -0.88
VPS41-211ENST00000466017 PLCB2Q00722 1185 aa9.53□□□□□ -0.88
VPS41-211ENST00000466017 MFSD10Q14728 455 aa9.53□□□□□ -0.88
VPS41-211ENST00000466017 PPP1R15BQ5SWA1 713 aa9.53□□□□□ -0.88
VPS41-211ENST00000466017 HOXB1P14653 301 aaPredicted RBP9.52□□□□□ -0.89
VPS41-211ENST00000466017 DOK7Q18PE1 504 aa9.52□□□□□ -0.89
VPS41-211ENST00000466017 TOP2AP11388 1531 aaKnown RBP9.51□□□□□ -0.89
VPS41-211ENST00000466017 EMILIN3Q9NT22 766 aa9.51□□□□□ -0.89
VPS41-211ENST00000466017 PCDHGA4Q9Y5G9 962 aa9.51□□□□□ -0.89
VPS41-211ENST00000466017 ZNF710Q8N1W2 664 aa9.5□□□□□ -0.89
VPS41-211ENST00000466017 DDX27Q96GQ7 796 aaKnown RBP9.5□□□□□ -0.89
VPS41-211ENST00000466017 HMGXB3Q12766 1538 aa9.5□□□□□ -0.89
VPS41-211ENST00000466017 KDM4FA0A1W2PPD8 638 aa9.49□□□□□ -0.89
VPS41-211ENST00000466017 UPF1Q92900 1129 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS41-211ENST00000466017 FAM205CA6NFA0 338 aa9.48□□□□□ -0.89
VPS41-211ENST00000466017 SLC34A2O95436 690 aa9.48□□□□□ -0.89
VPS41-211ENST00000466017 NUDT7P0C024 238 aa9.48□□□□□ -0.89
VPS41-211ENST00000466017 BAZ1BQ9UIG0 1483 aaKnown RBP9.47□□□□□ -0.89
VPS41-211ENST00000466017 CC2D2AQ9P2K1 1620 aa9.47□□□□□ -0.89
VPS41-211ENST00000466017 PTCD2Q8WV60 388 aaKnown RBP9.47□□□□□ -0.89
VPS41-211ENST00000466017 EMP3P54852 163 aa9.46□□□□□ -0.9
VPS41-211ENST00000466017 OXER1Q8TDS5 423 aa9.46□□□□□ -0.9
VPS41-211ENST00000466017 HS3ST6Q96QI5 342 aa9.44□□□□□ -0.9
VPS41-211ENST00000466017 ZSWIM6Q9HCJ5 1215 aa9.43□□□□□ -0.9
VPS41-211ENST00000466017 LHX6Q9UPM6 363 aa9.43□□□□□ -0.9
VPS41-211ENST00000466017 CAMK2BQ13554 666 aa9.42□□□□□ -0.9
VPS41-211ENST00000466017 KDM2AQ9Y2K7 1162 aa9.42□□□□□ -0.9
VPS41-211ENST00000466017 CCDC88BA6NC98 1476 aa9.41□□□□□ -0.9
VPS41-211ENST00000466017 RIMBP2O15034 1052 aa9.4□□□□□ -0.9
VPS41-211ENST00000466017 HAP1P54257 671 aaPredicted RBP9.4□□□□□ -0.9
VPS41-211ENST00000466017 VARS2Q5ST30 1063 aaKnown RBP9.4□□□□□ -0.9
VPS41-211ENST00000466017 CDAN1Q8IWY9 1227 aa9.4□□□□□ -0.9
VPS41-211ENST00000466017 ERBB3P21860 1342 aa9.39□□□□□ -0.91
VPS41-211ENST00000466017 POTEEQ6S8J3 1075 aa9.39□□□□□ -0.91
VPS41-211ENST00000466017 ZNF316A6NFI3 1004 aaPredicted RBP9.38□□□□□ -0.91
VPS41-211ENST00000466017 DPYSL4O14531 572 aa9.37□□□□□ -0.91
VPS41-211ENST00000466017 KRTAP3-3Q9BYR6 98 aa9.36□□□□□ -0.91
VPS41-211ENST00000466017 KRTAP3-2Q9BYR7 98 aa9.36□□□□□ -0.91
VPS41-211ENST00000466017 EVI5O60447 810 aa9.35□□□□□ -0.91
VPS41-211ENST00000466017 MAP3K9P80192 1104 aa9.33□□□□□ -0.92
VPS41-211ENST00000466017 E2F4Q16254 413 aa9.33□□□□□ -0.92
VPS41-211ENST00000466017 ANO8Q9HCE9 1232 aaPredicted RBP9.33□□□□□ -0.92
VPS41-211ENST00000466017 AXIN2Q9Y2T1 843 aa9.32□□□□□ -0.92
VPS41-211ENST00000466017 KCNV2Q8TDN2 545 aa9.31□□□□□ -0.92
VPS41-211ENST00000466017 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
VPS41-211ENST00000466017 TBC1D12O60347 775 aa9.3□□□□□ -0.92
VPS41-211ENST00000466017 CFTRP13569 1480 aa9.29□□□□□ -0.92
VPS41-211ENST00000466017 CADPSQ9ULU8 1353 aa9.29□□□□□ -0.92
VPS41-211ENST00000466017 ZNF687Q8N1G0 1237 aa9.29□□□□□ -0.92
VPS41-211ENST00000466017 PRIM1P49642 420 aaKnown RBP9.27□□□□□ -0.93
VPS41-211ENST00000466017 PSEN2P49810 448 aa9.25□□□□□ -0.93
VPS41-211ENST00000466017 FOSBP53539 338 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms