RNA–Protein interactions for RNA: ENST00000459994.2

SDF4-204, Transcript of stromal cell derived factor 4, humanhuman

TSL 5

Gene SDF4, Length 604 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-204ENST00000459994 CDK11AQ9UQ88 783 aaPredicted RBP25.14■■□□□ 1.62
SDF4-204ENST00000459994 CDC42BPAQ5VT25 1732 aa25.14■■□□□ 1.61
SDF4-204ENST00000459994 YEATS2Q9ULM3 1422 aa25.13■■□□□ 1.61
SDF4-204ENST00000459994 SCAPERQ9BY12 1400 aa25.12■■□□□ 1.61
SDF4-204ENST00000459994 PREX2Q70Z35 1606 aa25.12■■□□□ 1.61
SDF4-204ENST00000459994 MADDQ8WXG6 1647 aa25.12■■□□□ 1.61
SDF4-204ENST00000459994 ARHGAP5Q13017 1502 aa25.11■■□□□ 1.61
SDF4-204ENST00000459994 ZFYVE16Q7Z3T8 1539 aa25.11■■□□□ 1.61
SDF4-204ENST00000459994 POGZQ7Z3K3 1410 aa25.11■■□□□ 1.61
SDF4-204ENST00000459994 HECW2Q9P2P5 1572 aa25.1■■□□□ 1.61
SDF4-204ENST00000459994 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
SDF4-204ENST00000459994 RIMS1Q86UR5 1692 aaKnown RBP25.05■■□□□ 1.6
SDF4-204ENST00000459994 ITSN2Q9NZM3 1697 aa25.04■■□□□ 1.6
SDF4-204ENST00000459994 EFCAB2Q5VUJ9 269 aa25.04■■□□□ 1.6
SDF4-204ENST00000459994 CEP162Q5TB80 1403 aa25.03■■□□□ 1.6
SDF4-204ENST00000459994 PTPRMP28827 1452 aa25.02■■□□□ 1.6
SDF4-204ENST00000459994 ARID4BQ4LE39 1312 aaPredicted RBP25.02■■□□□ 1.6
SDF4-204ENST00000459994 KDM5CP41229 1560 aa25.01■■□□□ 1.59
SDF4-204ENST00000459994 MAGI2Q86UL8 1455 aa25.01■■□□□ 1.59
SDF4-204ENST00000459994 ARHGEF12Q9NZN5 1544 aa25.01■■□□□ 1.59
SDF4-204ENST00000459994 ABCC1P33527 1531 aa25■■□□□ 1.59
SDF4-204ENST00000459994 ZNF518AQ6AHZ1 1483 aa24.96■■□□□ 1.59
SDF4-204ENST00000459994 AFAP1Q8N556 730 aa24.96■■□□□ 1.59
SDF4-204ENST00000459994 SAMD9LQ8IVG5 1584 aa24.96■■□□□ 1.59
SDF4-204ENST00000459994 FER1L4A9Z1Z3 1794 aa24.95■■□□□ 1.59
SDF4-204ENST00000459994 ABCA6Q8N139 1617 aa24.95■■□□□ 1.58
SDF4-204ENST00000459994 DIP2CQ9Y2E4 1556 aa24.94■■□□□ 1.58
SDF4-204ENST00000459994 TRAPPC8Q9Y2L5 1435 aa24.94■■□□□ 1.58
SDF4-204ENST00000459994 ATP10AO60312 1499 aa24.92■■□□□ 1.58
SDF4-204ENST00000459994 GPATCH8Q9UKJ3 1502 aaKnown RBP24.91■■□□□ 1.58
SDF4-204ENST00000459994 KIDINS220Q9ULH0 1771 aa24.91■■□□□ 1.58
SDF4-204ENST00000459994 C9orf84Q5VXU9 1444 aa24.9■■□□□ 1.58
SDF4-204ENST00000459994 MLECQ14165 292 aa24.88■■□□□ 1.57
SDF4-204ENST00000459994 SYCP2Q9BX26 1530 aa24.87■■□□□ 1.57
SDF4-204ENST00000459994 TIAM1Q13009 1591 aa24.87■■□□□ 1.57
SDF4-204ENST00000459994 EHBP1L1Q8N3D4 1523 aa24.85■■□□□ 1.57
SDF4-204ENST00000459994 MLH3Q9UHC1 1453 aa24.84■■□□□ 1.57
SDF4-204ENST00000459994 MTUS2Q5JR59 1369 aa24.84■■□□□ 1.57
SDF4-204ENST00000459994 ZNF777Q9ULD5 760 aaPredicted RBP24.83■■□□□ 1.57
SDF4-204ENST00000459994 REREQ9P2R6 1566 aa24.81■■□□□ 1.56
SDF4-204ENST00000459994 PLPPR3Q6T4P5 718 aa24.81■■□□□ 1.56
SDF4-204ENST00000459994 MYT1LQ9UL68 1186 aa24.79■■□□□ 1.56
SDF4-204ENST00000459994 CCNB3Q8WWL7 1395 aa24.79■■□□□ 1.56
SDF4-204ENST00000459994 LMTK3Q96Q04 1460 aa24.78■■□□□ 1.56
SDF4-204ENST00000459994 HNRNPMP52272 730 aaKnown RBP eCLIP24.77■■□□□ 1.56
SDF4-204ENST00000459994 SUPT6HQ7KZ85 1726 aaKnown RBP24.75■■□□□ 1.55
SDF4-204ENST00000459994 INO80Q9ULG1 1556 aaPredicted RBP24.75■■□□□ 1.55
SDF4-204ENST00000459994 CFDP1Q9UEE9 299 aaPredicted RBP24.74■■□□□ 1.55
SDF4-204ENST00000459994 VPS8Q8N3P4 1428 aa24.73■■□□□ 1.55
SDF4-204ENST00000459994 ZNF644Q9H582 1327 aaPredicted RBP24.73■■□□□ 1.55
SDF4-204ENST00000459994 AGLP35573 1532 aa24.71■■□□□ 1.55
SDF4-204ENST00000459994 ATP7AQ04656 1500 aa24.71■■□□□ 1.55
SDF4-204ENST00000459994 NCOA2Q15596 1464 aa24.7■■□□□ 1.55
SDF4-204ENST00000459994 C3P01024 1663 aa24.7■■□□□ 1.54
SDF4-204ENST00000459994 KIAA1107Q9UPP5 1409 aa24.69■■□□□ 1.54
SDF4-204ENST00000459994 CEBPAP49715 358 aaPredicted RBP24.68■■□□□ 1.54
SDF4-204ENST00000459994 PLEKHH2Q8IVE3 1493 aa24.68■■□□□ 1.54
SDF4-204ENST00000459994 PREX1Q8TCU6 1659 aa24.66■■□□□ 1.54
SDF4-204ENST00000459994 MBD5Q9P267 1494 aa24.66■■□□□ 1.54
SDF4-204ENST00000459994 SPAG9O60271 1321 aaKnown RBP24.65■■□□□ 1.54
SDF4-204ENST00000459994 PLXNC1O60486 1568 aa24.64■■□□□ 1.54
SDF4-204ENST00000459994 ADGBQ8N7X0 1667 aa24.64■■□□□ 1.53
SDF4-204ENST00000459994 LRRC9Q6ZRR7 1453 aa24.64■■□□□ 1.53
SDF4-204ENST00000459994 HSPA2P54652 639 aa24.63■■□□□ 1.53
SDF4-204ENST00000459994 CAMSAP2Q08AD1 1489 aa24.61■■□□□ 1.53
SDF4-204ENST00000459994 KANK4Q5T7N3 995 aaPredicted RBP24.59■■□□□ 1.53
SDF4-204ENST00000459994 CLTCQ00610 1675 aaKnown RBP24.58■■□□□ 1.53
SDF4-204ENST00000459994 A2MP01023 1474 aa24.57■■□□□ 1.52
SDF4-204ENST00000459994 SETD1BQ9UPS6 1966 aaKnown RBP24.56■■□□□ 1.52
SDF4-204ENST00000459994 MROH2AA6NES4 1674 aa24.56■■□□□ 1.52
SDF4-204ENST00000459994 MAP3K1Q13233 1512 aa24.56■■□□□ 1.52
SDF4-204ENST00000459994 ILDR1Q86SU0 546 aaPredicted RBP24.54■■□□□ 1.52
SDF4-204ENST00000459994 STRCQ7RTU9 1775 aa24.52■■□□□ 1.52
SDF4-204ENST00000459994 CCDC141Q6ZP82 1450 aa24.51■■□□□ 1.51
SDF4-204ENST00000459994 ARHGEF5Q12774 1597 aa24.5■■□□□ 1.51
SDF4-204ENST00000459994 RTEL1-TNFRSF6BF6WH68 1400 aa24.48■■□□□ 1.51
SDF4-204ENST00000459994 CNTLNQ9NXG0 1405 aa24.45■■□□□ 1.51
SDF4-204ENST00000459994 UHRF1BP1Q6BDS2 1440 aa24.44■■□□□ 1.5
SDF4-204ENST00000459994 ESF1Q9H501 851 aaKnown RBP24.43■■□□□ 1.5
SDF4-204ENST00000459994 MYOM3Q5VTT5 1437 aa24.43■■□□□ 1.5
SDF4-204ENST00000459994 GGT6Q6P531 493 aa24.42■■□□□ 1.5
SDF4-204ENST00000459994 ZMYM3Q14202 1370 aa24.41■■□□□ 1.5
SDF4-204ENST00000459994 DHX29Q7Z478 1369 aaKnown RBP24.41■■□□□ 1.5
SDF4-204ENST00000459994 MAST1Q9Y2H9 1570 aa24.4■■□□□ 1.5
SDF4-204ENST00000459994 CROCC2H7BZ55 1655 aa24.38■■□□□ 1.49
SDF4-204ENST00000459994 MYO3AQ8NEV4 1616 aa24.38■■□□□ 1.49
SDF4-204ENST00000459994 PTPN23Q9H3S7 1636 aa24.36■■□□□ 1.49
SDF4-204ENST00000459994 MIA2Q96PC5 1412 aa24.35■■□□□ 1.49
SDF4-204ENST00000459994 ZNF142P52746 1687 aaPredicted RBP24.34■■□□□ 1.49
SDF4-204ENST00000459994 NPATQ14207 1427 aa24.34■■□□□ 1.49
SDF4-204ENST00000459994 PTPRKQ15262 1439 aa24.34■■□□□ 1.49
SDF4-204ENST00000459994 RSPH4AQ5TD94 716 aa24.33■■□□□ 1.49
SDF4-204ENST00000459994 KIF3BO15066 747 aa24.32■■□□□ 1.48
SDF4-204ENST00000459994 RNF17Q9BXT8 1623 aaKnown RBP24.3■■□□□ 1.48
SDF4-204ENST00000459994 CAMSAP1Q5T5Y3 1602 aa24.29■■□□□ 1.48
SDF4-204ENST00000459994 KDM5DQ9BY66 1539 aa24.29■■□□□ 1.48
SDF4-204ENST00000459994 TSPY4P0CV99 314 aa24.28■■□□□ 1.48
SDF4-204ENST00000459994 TSPY10P0CW01 314 aa24.28■■□□□ 1.48
SDF4-204ENST00000459994 MROH1Q8NDA8 1641 aa24.28■■□□□ 1.48
SDF4-204ENST00000459994 CEP170BQ9Y4F5 1589 aaPredicted RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms