RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CHMP4AQ9BY43 222 aa7.23□□□□□ -1.25
CCDC88A-209ENST00000456975 PCDHB8Q9UN66 801 aa7.23□□□□□ -1.25
CCDC88A-209ENST00000456975 PCDHB13Q9Y5F0 798 aa7.23□□□□□ -1.25
CCDC88A-209ENST00000456975 BARGINQ6ZT62 677 aa7.23□□□□□ -1.25
CCDC88A-209ENST00000456975 BAZ1BQ9UIG0 1483 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-209ENST00000456975 PRR29P0C7W0 189 aa7.22□□□□□ -1.25
CCDC88A-209ENST00000456975 RBM26Q5T8P6 1007 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-209ENST00000456975 KDM4CQ9H3R0 1056 aa7.22□□□□□ -1.25
CCDC88A-209ENST00000456975 MKRN3Q13064 507 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-209ENST00000456975 NCKAP5LQ9HCH0 1330 aa7.2□□□□□ -1.26
CCDC88A-209ENST00000456975 KRI1Q8N9T8 703 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-209ENST00000456975 PDS5BQ9NTI5 1447 aa7.19□□□□□ -1.26
CCDC88A-209ENST00000456975 AK7Q96M32 723 aa7.19□□□□□ -1.26
CCDC88A-209ENST00000456975 TSPYL2Q9H2G4 693 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-209ENST00000456975 RIMBP3CA6NJZ7 1639 aa7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 RIMBP3BA6NNM3 1639 aa7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 RIMBP3Q9UFD9 1639 aa7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 WDR62O43379 1518 aa7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 SPDYE1Q8NFV5 336 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 ANO8Q9HCE9 1232 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 MRC2Q9UBG0 1479 aa7.18□□□□□ -1.26
CCDC88A-209ENST00000456975 APBB1O00213 710 aa7.17□□□□□ -1.26
CCDC88A-209ENST00000456975 MLLT3P42568 568 aaPredicted RBP7.17□□□□□ -1.26
CCDC88A-209ENST00000456975 TAF7LQ5H9L4 462 aa7.17□□□□□ -1.26
CCDC88A-209ENST00000456975 LARP6Q9BRS8 491 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-209ENST00000456975 PDAP1Q13442 181 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-209ENST00000456975 DHX37Q8IY37 1157 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-209ENST00000456975 SMYD5Q6GMV2 418 aa7.15□□□□□ -1.26
CCDC88A-209ENST00000456975 ZNF467Q7Z7K2 595 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-209ENST00000456975 FAM117AQ9C073 453 aa7.15□□□□□ -1.26
CCDC88A-209ENST00000456975 PDE4DQ08499 809 aa7.15□□□□□ -1.27
CCDC88A-209ENST00000456975 GPIHBP1Q8IV16 184 aa7.15□□□□□ -1.27
CCDC88A-209ENST00000456975 PHF8Q9UPP1 1060 aa7.15□□□□□ -1.27
CCDC88A-209ENST00000456975 TRIM66O15016 1216 aa7.14□□□□□ -1.27
CCDC88A-209ENST00000456975 PSEN1P49768 467 aa7.14□□□□□ -1.27
CCDC88A-209ENST00000456975 EFCAB3Q8N7B9 438 aa7.14□□□□□ -1.27
CCDC88A-209ENST00000456975 FBXO22Q8NEZ5 403 aa7.14□□□□□ -1.27
CCDC88A-209ENST00000456975 PEG3Q9GZU2 1588 aa7.14□□□□□ -1.27
CCDC88A-209ENST00000456975 BRD2P25440 801 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-209ENST00000456975 NECTIN2Q92692 538 aa7.12□□□□□ -1.27
CCDC88A-209ENST00000456975 FGD1P98174 961 aa7.12□□□□□ -1.27
CCDC88A-209ENST00000456975 CACNB1Q02641 598 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-209ENST00000456975 ZNF316A6NFI3 1004 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-209ENST00000456975 CABP2Q9NPB3 220 aa7.11□□□□□ -1.27
CCDC88A-209ENST00000456975 CEP164Q9UPV0 1460 aa7.1□□□□□ -1.27
CCDC88A-209ENST00000456975 ARHGEF11O15085 1522 aa7.09□□□□□ -1.27
CCDC88A-209ENST00000456975 ANP32EQ9BTT0 268 aa7.09□□□□□ -1.27
CCDC88A-209ENST00000456975 MROH2BQ7Z745 1585 aa7.08□□□□□ -1.28
CCDC88A-209ENST00000456975 DDX27Q96GQ7 796 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-209ENST00000456975 CDK11AQ9UQ88 783 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-209ENST00000456975 PLEKHG3A1L390 1219 aa7.08□□□□□ -1.28
CCDC88A-209ENST00000456975 CDK11BP21127 795 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-209ENST00000456975 NLRP6P59044 892 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 POTEHQ6S545 545 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 CCDC82Q8N4S0 544 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 CLUAP1Q96AJ1 413 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 CADPSQ9ULU8 1353 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 CHADLQ6NUI6 762 aa7.07□□□□□ -1.28
CCDC88A-209ENST00000456975 ZBTB7CA1YPR0 619 aa7.05□□□□□ -1.28
CCDC88A-209ENST00000456975 PDE4AP27815 886 aa7.05□□□□□ -1.28
CCDC88A-209ENST00000456975 MFSD10Q14728 455 aa7.05□□□□□ -1.28
CCDC88A-209ENST00000456975 REM2Q8IYK8 340 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-209ENST00000456975 CRISPLD2Q9H0B8 497 aa7.05□□□□□ -1.28
CCDC88A-209ENST00000456975 FANCD2Q9BXW9 1451 aa7.04□□□□□ -1.28
CCDC88A-209ENST00000456975 IFNL1Q8IU54 200 aa7.04□□□□□ -1.28
CCDC88A-209ENST00000456975 CHD1O14646 1710 aa7.04□□□□□ -1.28
CCDC88A-209ENST00000456975 PRDM2Q13029 1718 aa7.04□□□□□ -1.28
CCDC88A-209ENST00000456975 MS4A4AQ96JQ5 239 aa7.04□□□□□ -1.28
CCDC88A-209ENST00000456975 RSF1Q96T23 1441 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 CAMK2BQ13554 666 aa7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 CCDC9Q9Y3X0 531 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 ARIH1Q9Y4X5 557 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 AKT1S1Q96B36 256 aa7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 CCDC61Q9Y6R9 512 aa7.03□□□□□ -1.28
CCDC88A-209ENST00000456975 ZNF579Q8NAF0 562 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-209ENST00000456975 WIZO95785 1651 aa7.01□□□□□ -1.29
CCDC88A-209ENST00000456975 SOX12O15370 315 aa7.01□□□□□ -1.29
CCDC88A-209ENST00000456975 URB2Q14146 1524 aaKnown RBP7□□□□□ -1.29
CCDC88A-209ENST00000456975 DPYSL4O14531 572 aa7□□□□□ -1.29
CCDC88A-209ENST00000456975 GPR37O15354 613 aa7□□□□□ -1.29
CCDC88A-209ENST00000456975 ONECUT3O60422 494 aaPredicted RBP7□□□□□ -1.29
CCDC88A-209ENST00000456975 PITPNM1O00562 1244 aa6.99□□□□□ -1.29
CCDC88A-209ENST00000456975 CYB5RLQ6IPT4 315 aa6.99□□□□□ -1.29
CCDC88A-209ENST00000456975 PARP9Q8IXQ6 854 aa6.99□□□□□ -1.29
CCDC88A-209ENST00000456975 ARAP1Q96P48 1450 aa6.99□□□□□ -1.29
CCDC88A-209ENST00000456975 EIF4G3O43432 1585 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-209ENST00000456975 TRAK2O60296 914 aa6.98□□□□□ -1.29
CCDC88A-209ENST00000456975 IGSF3O75054 1194 aa6.98□□□□□ -1.29
CCDC88A-209ENST00000456975 HSP90B1P14625 803 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-209ENST00000456975 CCDC102AQ96A19 550 aa6.98□□□□□ -1.29
CCDC88A-209ENST00000456975 MAP3K13O43283 966 aa6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 FLIIQ13045 1269 aa6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 EMILIN3Q9NT22 766 aa6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 DDRGK1Q96HY6 314 aa6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 ZNF777Q9ULD5 760 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 ZNF608Q9ULD9 1512 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-209ENST00000456975 FECHP22830 423 aa6.96□□□□□ -1.3
CCDC88A-209ENST00000456975 RSPH4AQ5TD94 716 aa6.96□□□□□ -1.3
CCDC88A-209ENST00000456975 KCTD17Q8N5Z5 321 aa6.95□□□□□ -1.3
CCDC88A-209ENST00000456975 FARP1Q9Y4F1 1045 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms