RNA–Protein interactions for RNA: ENST00000454952.1

NIF3L1-209, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 5

Gene NIF3L1, Length 719 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-209ENST00000454952 CDK11AQ9UQ88 783 aaPredicted RBP13.29□□□□□ -0.28
NIF3L1-209ENST00000454952 ZFYVE16Q7Z3T8 1539 aa13.29□□□□□ -0.28
NIF3L1-209ENST00000454952 PCF11O94913 1555 aaKnown RBP13.28□□□□□ -0.28
NIF3L1-209ENST00000454952 HECW1Q76N89 1606 aa13.28□□□□□ -0.28
NIF3L1-209ENST00000454952 RIMS1Q86UR5 1692 aaKnown RBP13.28□□□□□ -0.28
NIF3L1-209ENST00000454952 UBTFP17480 764 aaKnown RBP13.27□□□□□ -0.29
NIF3L1-209ENST00000454952 PLCH2O75038 1416 aa13.26□□□□□ -0.29
NIF3L1-209ENST00000454952 CDK13Q14004 1512 aaKnown RBP13.26□□□□□ -0.29
NIF3L1-209ENST00000454952 MYO5CQ9NQX4 1742 aa13.26□□□□□ -0.29
NIF3L1-209ENST00000454952 FBXO41Q8TF61 875 aa13.25□□□□□ -0.29
NIF3L1-209ENST00000454952 EFCAB2Q5VUJ9 269 aa13.24□□□□□ -0.29
NIF3L1-209ENST00000454952 LMTK3Q96Q04 1460 aa13.23□□□□□ -0.29
NIF3L1-209ENST00000454952 SCAPERQ9BY12 1400 aa13.23□□□□□ -0.29
NIF3L1-209ENST00000454952 CLIP1P30622 1438 aa13.22□□□□□ -0.29
NIF3L1-209ENST00000454952 KIF14Q15058 1648 aa13.22□□□□□ -0.29
NIF3L1-209ENST00000454952 ATP1B4Q9UN42 357 aaPredicted RBP13.22□□□□□ -0.29
NIF3L1-209ENST00000454952 FER1L4A9Z1Z3 1794 aa13.22□□□□□ -0.29
NIF3L1-209ENST00000454952 ARHGAP35Q9NRY4 1499 aa13.21□□□□□ -0.3
NIF3L1-209ENST00000454952 YEATS2Q9ULM3 1422 aa13.21□□□□□ -0.3
NIF3L1-209ENST00000454952 ATP10AO60312 1499 aa13.2□□□□□ -0.3
NIF3L1-209ENST00000454952 TROQ12816 1431 aaPredicted RBP13.2□□□□□ -0.3
NIF3L1-209ENST00000454952 C9orf84Q5VXU9 1444 aa13.2□□□□□ -0.3
NIF3L1-209ENST00000454952 ZNF518AQ6AHZ1 1483 aa13.19□□□□□ -0.3
NIF3L1-209ENST00000454952 ARHGAP5Q13017 1502 aa13.18□□□□□ -0.3
NIF3L1-209ENST00000454952 SIGLEC1Q9BZZ2 1709 aa13.16□□□□□ -0.3
NIF3L1-209ENST00000454952 ARHGEF12Q9NZN5 1544 aa13.16□□□□□ -0.3
NIF3L1-209ENST00000454952 CCDC18Q5T9S5 1454 aa13.16□□□□□ -0.3
NIF3L1-209ENST00000454952 MLECQ14165 292 aa13.15□□□□□ -0.3
NIF3L1-209ENST00000454952 KDM5CP41229 1560 aa13.15□□□□□ -0.3
NIF3L1-209ENST00000454952 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
NIF3L1-209ENST00000454952 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
NIF3L1-209ENST00000454952 SETD1BQ9UPS6 1966 aaKnown RBP13.14□□□□□ -0.31
NIF3L1-209ENST00000454952 PREX1Q8TCU6 1659 aa13.13□□□□□ -0.31
NIF3L1-209ENST00000454952 REREQ9P2R6 1566 aa13.13□□□□□ -0.31
NIF3L1-209ENST00000454952 HSPA2P54652 639 aa13.12□□□□□ -0.31
NIF3L1-209ENST00000454952 MYT1LQ9UL68 1186 aa13.12□□□□□ -0.31
NIF3L1-209ENST00000454952 LRRIQ1Q96JM4 1722 aa13.12□□□□□ -0.31
NIF3L1-209ENST00000454952 CASKIN1Q8WXD9 1431 aa13.12□□□□□ -0.31
NIF3L1-209ENST00000454952 CDC42BPBQ9Y5S2 1711 aa13.11□□□□□ -0.31
NIF3L1-209ENST00000454952 PREX2Q70Z35 1606 aa13.11□□□□□ -0.31
NIF3L1-209ENST00000454952 MLH3Q9UHC1 1453 aa13.1□□□□□ -0.31
NIF3L1-209ENST00000454952 AFAP1Q8N556 730 aa13.09□□□□□ -0.31
NIF3L1-209ENST00000454952 DIP2CQ9Y2E4 1556 aa13.09□□□□□ -0.31
NIF3L1-209ENST00000454952 DMRT2Q9Y5R5 561 aa13.09□□□□□ -0.31
NIF3L1-209ENST00000454952 ABCC1P33527 1531 aa13.08□□□□□ -0.31
NIF3L1-209ENST00000454952 ESF1Q9H501 851 aaKnown RBP13.08□□□□□ -0.32
NIF3L1-209ENST00000454952 FYCO1Q9BQS8 1478 aa13.08□□□□□ -0.32
NIF3L1-209ENST00000454952 AGLP35573 1532 aa13.08□□□□□ -0.32
NIF3L1-209ENST00000454952 UHRF1BP1Q6BDS2 1440 aa13.07□□□□□ -0.32
NIF3L1-209ENST00000454952 ITSN2Q9NZM3 1697 aa13.07□□□□□ -0.32
NIF3L1-209ENST00000454952 ABCA6Q8N139 1617 aa13.06□□□□□ -0.32
NIF3L1-209ENST00000454952 CDC42BPAQ5VT25 1732 aa13.05□□□□□ -0.32
NIF3L1-209ENST00000454952 CERKQ8TCT0 537 aa13.05□□□□□ -0.32
NIF3L1-209ENST00000454952 CNTLNQ9NXG0 1405 aa13.05□□□□□ -0.32
NIF3L1-209ENST00000454952 CEBPAP49715 358 aaPredicted RBP13.03□□□□□ -0.32
NIF3L1-209ENST00000454952 TRAPPC8Q9Y2L5 1435 aa13.03□□□□□ -0.32
NIF3L1-209ENST00000454952 C3P01024 1663 aa13.02□□□□□ -0.32
NIF3L1-209ENST00000454952 KIDINS220Q9ULH0 1771 aa13.02□□□□□ -0.32
NIF3L1-209ENST00000454952 NPM3O75607 178 aaKnown RBP13.02□□□□□ -0.33
NIF3L1-209ENST00000454952 SCAF1Q9H7N4 1312 aaKnown RBP13.02□□□□□ -0.33
NIF3L1-209ENST00000454952 PLEKHH2Q8IVE3 1493 aa13.01□□□□□ -0.33
NIF3L1-209ENST00000454952 STRCQ7RTU9 1775 aa13.01□□□□□ -0.33
NIF3L1-209ENST00000454952 MAPK8IP2Q13387 824 aaPredicted RBP13□□□□□ -0.33
NIF3L1-209ENST00000454952 MROH2AA6NES4 1674 aa12.99□□□□□ -0.33
NIF3L1-209ENST00000454952 SAMD9LQ8IVG5 1584 aa12.99□□□□□ -0.33
NIF3L1-209ENST00000454952 PTPRTO14522 1441 aa12.98□□□□□ -0.33
NIF3L1-209ENST00000454952 KIAA1107Q9UPP5 1409 aa12.98□□□□□ -0.33
NIF3L1-209ENST00000454952 SPAG9O60271 1321 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-209ENST00000454952 GPATCH8Q9UKJ3 1502 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-209ENST00000454952 NPATQ14207 1427 aa12.97□□□□□ -0.33
NIF3L1-209ENST00000454952 CNKSR2Q8WXI2 1034 aa12.97□□□□□ -0.33
NIF3L1-209ENST00000454952 ZNF777Q9ULD5 760 aaPredicted RBP12.97□□□□□ -0.33
NIF3L1-209ENST00000454952 SYCP2Q9BX26 1530 aa12.97□□□□□ -0.33
NIF3L1-209ENST00000454952 CCNB3Q8WWL7 1395 aa12.96□□□□□ -0.33
NIF3L1-209ENST00000454952 CACNB1Q02641 598 aaPredicted RBP12.96□□□□□ -0.33
NIF3L1-209ENST00000454952 CFDP1Q9UEE9 299 aaPredicted RBP12.96□□□□□ -0.33
NIF3L1-209ENST00000454952 MTUS2Q5JR59 1369 aa12.95□□□□□ -0.34
NIF3L1-209ENST00000454952 ATP7AQ04656 1500 aa12.95□□□□□ -0.34
NIF3L1-209ENST00000454952 SUPT6HQ7KZ85 1726 aaKnown RBP12.94□□□□□ -0.34
NIF3L1-209ENST00000454952 INO80Q9ULG1 1556 aaPredicted RBP12.94□□□□□ -0.34
NIF3L1-209ENST00000454952 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
NIF3L1-209ENST00000454952 ADGBQ8N7X0 1667 aa12.93□□□□□ -0.34
NIF3L1-209ENST00000454952 A2MP01023 1474 aa12.92□□□□□ -0.34
NIF3L1-209ENST00000454952 PLXNC1O60486 1568 aa12.92□□□□□ -0.34
NIF3L1-209ENST00000454952 HNRNPMP52272 730 aaKnown RBP eCLIP12.92□□□□□ -0.34
NIF3L1-209ENST00000454952 NCOA1Q15788 1441 aa12.92□□□□□ -0.34
NIF3L1-209ENST00000454952 ZMYM3Q14202 1370 aa12.92□□□□□ -0.34
NIF3L1-209ENST00000454952 IQSEC2Q5JU85 1478 aa12.91□□□□□ -0.34
NIF3L1-209ENST00000454952 EHBP1L1Q8N3D4 1523 aa12.9□□□□□ -0.34
NIF3L1-209ENST00000454952 CLTCQ00610 1675 aaKnown RBP12.89□□□□□ -0.35
NIF3L1-209ENST00000454952 CAMSAP1Q5T5Y3 1602 aa12.89□□□□□ -0.35
NIF3L1-209ENST00000454952 ZNF142P52746 1687 aaPredicted RBP12.89□□□□□ -0.35
NIF3L1-209ENST00000454952 RTEL1-TNFRSF6BF6WH68 1400 aa12.88□□□□□ -0.35
NIF3L1-209ENST00000454952 TIAM1Q13009 1591 aa12.87□□□□□ -0.35
NIF3L1-209ENST00000454952 MYO3AQ8NEV4 1616 aa12.87□□□□□ -0.35
NIF3L1-209ENST00000454952 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
NIF3L1-209ENST00000454952 PLA2R1Q13018 1463 aa12.86□□□□□ -0.35
NIF3L1-209ENST00000454952 PKD2Q13563 968 aa12.86□□□□□ -0.35
NIF3L1-209ENST00000454952 LTBP4Q8N2S1 1624 aa12.86□□□□□ -0.35
NIF3L1-209ENST00000454952 FAM135AQ9P2D6 1515 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms