RNA–Protein interactions for RNA: ENST00000454952.1

NIF3L1-209, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 5

Gene NIF3L1, Length 719 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-209ENST00000454952 NISCHQ9Y2I1 1504 aa20.15■□□□□ 0.82
NIF3L1-209ENST00000454952 AEBP2Q6ZN18 517 aaPredicted RBP19.15■□□□□ 0.66
NIF3L1-209ENST00000454952 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
NIF3L1-209ENST00000454952 CCDC180Q9P1Z9 1646 aa18.19■□□□□ 0.5
NIF3L1-209ENST00000454952 ABCC9O60706 1549 aa18.15■□□□□ 0.5
NIF3L1-209ENST00000454952 RB1CC1Q8TDY2 1594 aa17.33■□□□□ 0.37
NIF3L1-209ENST00000454952 NACADO15069 1562 aa17.2■□□□□ 0.34
NIF3L1-209ENST00000454952 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.32
NIF3L1-209ENST00000454952 DCAF8L2P0C7V8 631 aa16.99■□□□□ 0.31
NIF3L1-209ENST00000454952 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
NIF3L1-209ENST00000454952 UNC13AQ9UPW8 1703 aa16.89■□□□□ 0.29
NIF3L1-209ENST00000454952 PABPN1Q86U42 306 aaKnown RBP eCLIP16.85■□□□□ 0.29
NIF3L1-209ENST00000454952 BICRAQ9NZM4 1560 aa16.74■□□□□ 0.27
NIF3L1-209ENST00000454952 DCAF1Q9Y4B6 1507 aa16.7■□□□□ 0.26
NIF3L1-209ENST00000454952 ZCCHC6Q5VYS8 1495 aaKnown RBP16.68■□□□□ 0.26
NIF3L1-209ENST00000454952 SHROOM4Q9ULL8 1493 aa16.66■□□□□ 0.26
NIF3L1-209ENST00000454952 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
NIF3L1-209ENST00000454952 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
NIF3L1-209ENST00000454952 CC2D2AQ9P2K1 1620 aa16.42■□□□□ 0.22
NIF3L1-209ENST00000454952 CECR2Q9BXF3 1484 aa16.4■□□□□ 0.22
NIF3L1-209ENST00000454952 PHF23Q9BUL5 403 aaPredicted RBP16.38■□□□□ 0.21
NIF3L1-209ENST00000454952 EIF4G1Q04637 1599 aaKnown RBP16.38■□□□□ 0.21
NIF3L1-209ENST00000454952 NCAPD3P42695 1498 aa15.84■□□□□ 0.13
NIF3L1-209ENST00000454952 DNAJC5Q9H3Z4 198 aa15.79■□□□□ 0.12
NIF3L1-209ENST00000454952 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
NIF3L1-209ENST00000454952 CUX2O14529 1486 aa15.76■□□□□ 0.11
NIF3L1-209ENST00000454952 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
NIF3L1-209ENST00000454952 HMGXB3Q12766 1538 aa15.74■□□□□ 0.11
NIF3L1-209ENST00000454952 ERCC6Q03468 1493 aa15.74■□□□□ 0.11
NIF3L1-209ENST00000454952 SMARCA4P51532 1647 aa15.74■□□□□ 0.11
NIF3L1-209ENST00000454952 BAZ1AQ9NRL2 1556 aaPredicted RBP15.69■□□□□ 0.1
NIF3L1-209ENST00000454952 BAZ1BQ9UIG0 1483 aaKnown RBP15.63■□□□□ 0.09
NIF3L1-209ENST00000454952 PEG3Q9GZU2 1588 aa15.62■□□□□ 0.09
NIF3L1-209ENST00000454952 NESP48681 1621 aa15.54■□□□□ 0.08
NIF3L1-209ENST00000454952 LAMC3Q9Y6N6 1575 aa15.53■□□□□ 0.08
NIF3L1-209ENST00000454952 MROH2BQ7Z745 1585 aa15.48■□□□□ 0.07
NIF3L1-209ENST00000454952 THOC2Q8NI27 1593 aaKnown RBP15.45■□□□□ 0.06
NIF3L1-209ENST00000454952 PDS5BQ9NTI5 1447 aa15.44■□□□□ 0.06
NIF3L1-209ENST00000454952 FOXD1Q16676 465 aa15.4■□□□□ 0.06
NIF3L1-209ENST00000454952 KIF21AQ7Z4S6 1674 aa15.39■□□□□ 0.05
NIF3L1-209ENST00000454952 CADPSQ9ULU8 1353 aa15.35■□□□□ 0.05
NIF3L1-209ENST00000454952 WIZO95785 1651 aa15.3■□□□□ 0.04
NIF3L1-209ENST00000454952 MRC2Q9UBG0 1479 aa15.29■□□□□ 0.04
NIF3L1-209ENST00000454952 WDR62O43379 1518 aa15.25■□□□□ 0.03
NIF3L1-209ENST00000454952 CEP164Q9UPV0 1460 aa15.22■□□□□ 0.03
NIF3L1-209ENST00000454952 POTEDQ86YR6 584 aa15.19■□□□□ 0.02
NIF3L1-209ENST00000454952 PLPPR3Q6T4P5 718 aa15.18■□□□□ 0.02
NIF3L1-209ENST00000454952 FANCD2Q9BXW9 1451 aa15.17■□□□□ 0.02
NIF3L1-209ENST00000454952 CFTRP13569 1480 aa15.16■□□□□ 0.02
NIF3L1-209ENST00000454952 TOP2AP11388 1531 aaKnown RBP15.15■□□□□ 0.02
NIF3L1-209ENST00000454952 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
NIF3L1-209ENST00000454952 PRDM2Q13029 1718 aa15.07■□□□□ 0
NIF3L1-209ENST00000454952 URB2Q14146 1524 aaKnown RBP15.02■□□□□ -0
NIF3L1-209ENST00000454952 TRIM41Q8WV44 630 aa15.02■□□□□ -0
NIF3L1-209ENST00000454952 OSCARQ8IYS5 282 aa15.01□□□□□ -0.01
NIF3L1-209ENST00000454952 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
NIF3L1-209ENST00000454952 IFT140Q96RY7 1462 aa14.93□□□□□ -0.02
NIF3L1-209ENST00000454952 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
NIF3L1-209ENST00000454952 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
NIF3L1-209ENST00000454952 DNMBPQ6XZF7 1577 aa14.84□□□□□ -0.03
NIF3L1-209ENST00000454952 ZNF608Q9ULD9 1512 aaPredicted RBP14.83□□□□□ -0.04
NIF3L1-209ENST00000454952 EIF4G3O43432 1585 aaKnown RBP14.8□□□□□ -0.04
NIF3L1-209ENST00000454952 RIMBP3CA6NJZ7 1639 aa14.79□□□□□ -0.04
NIF3L1-209ENST00000454952 RIMBP3BA6NNM3 1639 aa14.79□□□□□ -0.04
NIF3L1-209ENST00000454952 RIMBP3Q9UFD9 1639 aa14.79□□□□□ -0.04
NIF3L1-209ENST00000454952 TARBP1Q13395 1621 aaKnown RBP14.74□□□□□ -0.05
NIF3L1-209ENST00000454952 ARHGEF11O15085 1522 aa14.74□□□□□ -0.05
NIF3L1-209ENST00000454952 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
NIF3L1-209ENST00000454952 CHD1O14646 1710 aa14.7□□□□□ -0.06
NIF3L1-209ENST00000454952 AQRO60306 1485 aaKnown RBP eCLIP14.69□□□□□ -0.06
NIF3L1-209ENST00000454952 WDR97A6NE52 1622 aa14.69□□□□□ -0.06
NIF3L1-209ENST00000454952 SOGA1O94964 1423 aa14.66□□□□□ -0.06
NIF3L1-209ENST00000454952 FBLN2P98095 1184 aa14.63□□□□□ -0.07
NIF3L1-209ENST00000454952 MSH5O43196 834 aa14.61□□□□□ -0.07
NIF3L1-209ENST00000454952 CYB5RLQ6IPT4 315 aa14.61□□□□□ -0.07
NIF3L1-209ENST00000454952 RAD54L2Q9Y4B4 1467 aa14.61□□□□□ -0.07
NIF3L1-209ENST00000454952 FGD5Q6ZNL6 1462 aa14.6□□□□□ -0.07
NIF3L1-209ENST00000454952 TDRD9Q8NDG6 1382 aaKnown RBP14.6□□□□□ -0.07
NIF3L1-209ENST00000454952 MAGI1Q96QZ7 1491 aaPredicted RBP14.59□□□□□ -0.07
NIF3L1-209ENST00000454952 SNAPC4Q5SXM2 1469 aa14.57□□□□□ -0.08
NIF3L1-209ENST00000454952 ARAP1Q96P48 1450 aa14.57□□□□□ -0.08
NIF3L1-209ENST00000454952 CUX1P39880 1505 aa14.56□□□□□ -0.08
NIF3L1-209ENST00000454952 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
NIF3L1-209ENST00000454952 GRIN2BQ13224 1484 aa14.56□□□□□ -0.08
NIF3L1-209ENST00000454952 CHMP7Q8WUX9 453 aaPredicted RBP14.55□□□□□ -0.08
NIF3L1-209ENST00000454952 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.08
NIF3L1-209ENST00000454952 SYNJ2O15056 1496 aa14.52□□□□□ -0.08
NIF3L1-209ENST00000454952 TRHP20396 242 aaPredicted RBP14.5□□□□□ -0.09
NIF3L1-209ENST00000454952 PBRM1Q86U86 1689 aa14.49□□□□□ -0.09
NIF3L1-209ENST00000454952 GAPVD1Q14C86 1478 aa14.48□□□□□ -0.09
NIF3L1-209ENST00000454952 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.09
NIF3L1-209ENST00000454952 ABCA5Q8WWZ7 1642 aa14.44□□□□□ -0.1
NIF3L1-209ENST00000454952 WRNQ14191 1432 aaPredicted RBP eCLIP14.41□□□□□ -0.1
NIF3L1-209ENST00000454952 SUPT5HO00267 1087 aaKnown RBP14.39□□□□□ -0.11
NIF3L1-209ENST00000454952 BIVM-ERCC5R4GMW8 1640 aa14.36□□□□□ -0.11
NIF3L1-209ENST00000454952 TOP2BQ02880 1626 aa14.35□□□□□ -0.11
NIF3L1-209ENST00000454952 GRIN2AQ12879 1464 aa14.35□□□□□ -0.11
NIF3L1-209ENST00000454952 ADAMTS12P58397 1594 aa14.34□□□□□ -0.11
NIF3L1-209ENST00000454952 PIAS4Q8N2W9 510 aaPredicted RBP14.32□□□□□ -0.12
NIF3L1-209ENST00000454952 PPP6R1Q9UPN7 881 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms