RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 RIMS1Q86UR5 1692 aaKnown RBP23.52■■□□□ 1.36
USP39-206ENST00000448971 CDK13Q14004 1512 aaKnown RBP23.51■■□□□ 1.35
USP39-206ENST00000448971 PLCH2O75038 1416 aa23.5■■□□□ 1.35
USP39-206ENST00000448971 SIGLEC1Q9BZZ2 1709 aa23.5■■□□□ 1.35
USP39-206ENST00000448971 MAGI2Q86UL8 1455 aa23.5■■□□□ 1.35
USP39-206ENST00000448971 ATP1B4Q9UN42 357 aaPredicted RBP23.49■■□□□ 1.35
USP39-206ENST00000448971 POGZQ7Z3K3 1410 aa23.49■■□□□ 1.35
USP39-206ENST00000448971 SCAPERQ9BY12 1400 aa23.48■■□□□ 1.35
USP39-206ENST00000448971 ZFYVE16Q7Z3T8 1539 aa23.48■■□□□ 1.35
USP39-206ENST00000448971 HSPA2P54652 639 aa23.47■■□□□ 1.35
USP39-206ENST00000448971 CEP162Q5TB80 1403 aa23.47■■□□□ 1.35
USP39-206ENST00000448971 MLECQ14165 292 aa23.42■■□□□ 1.34
USP39-206ENST00000448971 EFCAB2Q5VUJ9 269 aa23.41■■□□□ 1.34
USP39-206ENST00000448971 CASKIN1Q8WXD9 1431 aa23.41■■□□□ 1.34
USP39-206ENST00000448971 FYCO1Q9BQS8 1478 aa23.4■■□□□ 1.34
USP39-206ENST00000448971 ATP10AO60312 1499 aa23.39■■□□□ 1.34
USP39-206ENST00000448971 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
USP39-206ENST00000448971 CDK11AQ9UQ88 783 aaPredicted RBP23.38■■□□□ 1.33
USP39-206ENST00000448971 CCDC18Q5T9S5 1454 aa23.37■■□□□ 1.33
USP39-206ENST00000448971 LRRIQ1Q96JM4 1722 aa23.37■■□□□ 1.33
USP39-206ENST00000448971 FER1L4A9Z1Z3 1794 aa23.35■■□□□ 1.33
USP39-206ENST00000448971 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.33
USP39-206ENST00000448971 MYO5CQ9NQX4 1742 aa23.33■■□□□ 1.32
USP39-206ENST00000448971 C9orf84Q5VXU9 1444 aa23.33■■□□□ 1.32
USP39-206ENST00000448971 AFAP1Q8N556 730 aa23.32■■□□□ 1.32
USP39-206ENST00000448971 KIF14Q15058 1648 aa23.31■■□□□ 1.32
USP39-206ENST00000448971 TROQ12816 1431 aaPredicted RBP23.31■■□□□ 1.32
USP39-206ENST00000448971 CEBPAP49715 358 aaPredicted RBP23.3■■□□□ 1.32
USP39-206ENST00000448971 CERKQ8TCT0 537 aa23.29■■□□□ 1.32
USP39-206ENST00000448971 ZNF518AQ6AHZ1 1483 aa23.28■■□□□ 1.32
USP39-206ENST00000448971 KDM5CP41229 1560 aa23.26■■□□□ 1.31
USP39-206ENST00000448971 SETD1BQ9UPS6 1966 aaKnown RBP23.25■■□□□ 1.31
USP39-206ENST00000448971 ARHGAP5Q13017 1502 aa23.24■■□□□ 1.31
USP39-206ENST00000448971 PREX1Q8TCU6 1659 aa23.21■■□□□ 1.31
USP39-206ENST00000448971 CDC42BPBQ9Y5S2 1711 aa23.21■■□□□ 1.31
USP39-206ENST00000448971 MLH3Q9UHC1 1453 aa23.19■■□□□ 1.3
USP39-206ENST00000448971 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
USP39-206ENST00000448971 VPS8Q8N3P4 1428 aa23.18■■□□□ 1.3
USP39-206ENST00000448971 MYT1LQ9UL68 1186 aa23.18■■□□□ 1.3
USP39-206ENST00000448971 REREQ9P2R6 1566 aa23.17■■□□□ 1.3
USP39-206ENST00000448971 TRAPPC8Q9Y2L5 1435 aa23.16■■□□□ 1.3
USP39-206ENST00000448971 STRCQ7RTU9 1775 aa23.16■■□□□ 1.3
USP39-206ENST00000448971 DMRT2Q9Y5R5 561 aa23.15■■□□□ 1.3
USP39-206ENST00000448971 ABCA6Q8N139 1617 aa23.13■■□□□ 1.29
USP39-206ENST00000448971 UHRF1BP1Q6BDS2 1440 aa23.12■■□□□ 1.29
USP39-206ENST00000448971 AGLP35573 1532 aa23.12■■□□□ 1.29
USP39-206ENST00000448971 MTUS2Q5JR59 1369 aa23.12■■□□□ 1.29
USP39-206ENST00000448971 ADRA2BP18089 450 aa23.11■■□□□ 1.29
USP39-206ENST00000448971 PPP6R1Q9UPN7 881 aa23.11■■□□□ 1.29
USP39-206ENST00000448971 ABCC1P33527 1531 aa23.11■■□□□ 1.29
USP39-206ENST00000448971 EHBP1L1Q8N3D4 1523 aa23.11■■□□□ 1.29
USP39-206ENST00000448971 PREX2Q70Z35 1606 aa23.11■■□□□ 1.29
USP39-206ENST00000448971 C3P01024 1663 aa23.08■■□□□ 1.29
USP39-206ENST00000448971 KIDINS220Q9ULH0 1771 aa23.06■■□□□ 1.28
USP39-206ENST00000448971 ITSN2Q9NZM3 1697 aa23.06■■□□□ 1.28
USP39-206ENST00000448971 TIAM1Q13009 1591 aa23.06■■□□□ 1.28
USP39-206ENST00000448971 CDC42BPAQ5VT25 1732 aa23.05■■□□□ 1.28
USP39-206ENST00000448971 ESF1Q9H501 851 aaKnown RBP23.04■■□□□ 1.28
USP39-206ENST00000448971 PTPRTO14522 1441 aa23.03■■□□□ 1.28
USP39-206ENST00000448971 ZNF777Q9ULD5 760 aaPredicted RBP23■■□□□ 1.27
USP39-206ENST00000448971 CNTLNQ9NXG0 1405 aa22.99■■□□□ 1.27
USP39-206ENST00000448971 GPATCH8Q9UKJ3 1502 aaKnown RBP22.99■■□□□ 1.27
USP39-206ENST00000448971 SAMD9LQ8IVG5 1584 aa22.99■■□□□ 1.27
USP39-206ENST00000448971 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.27
USP39-206ENST00000448971 CCNB3Q8WWL7 1395 aa22.97■■□□□ 1.27
USP39-206ENST00000448971 SUPT6HQ7KZ85 1726 aaKnown RBP22.96■■□□□ 1.27
USP39-206ENST00000448971 SPAG9O60271 1321 aaKnown RBP22.95■■□□□ 1.26
USP39-206ENST00000448971 ZMYM3Q14202 1370 aa22.95■■□□□ 1.26
USP39-206ENST00000448971 NCOA1Q15788 1441 aa22.94■■□□□ 1.26
USP39-206ENST00000448971 LTBP4Q8N2S1 1624 aa22.93■■□□□ 1.26
USP39-206ENST00000448971 MAP3K1Q13233 1512 aa22.93■■□□□ 1.26
USP39-206ENST00000448971 SYCP2Q9BX26 1530 aa22.93■■□□□ 1.26
USP39-206ENST00000448971 LRRC9Q6ZRR7 1453 aa22.93■■□□□ 1.26
USP39-206ENST00000448971 NPATQ14207 1427 aa22.92■■□□□ 1.26
USP39-206ENST00000448971 KIAA1107Q9UPP5 1409 aa22.92■■□□□ 1.26
USP39-206ENST00000448971 NCOA2Q15596 1464 aa22.92■■□□□ 1.26
USP39-206ENST00000448971 CFDP1Q9UEE9 299 aaPredicted RBP22.91■■□□□ 1.26
USP39-206ENST00000448971 APLP2Q06481 763 aa22.9■■□□□ 1.26
USP39-206ENST00000448971 MROH2AA6NES4 1674 aa22.9■■□□□ 1.26
USP39-206ENST00000448971 ILDR2Q71H61 639 aa22.88■■□□□ 1.25
USP39-206ENST00000448971 DISP3Q9P2K9 1392 aa22.87■■□□□ 1.25
USP39-206ENST00000448971 ATP7AQ04656 1500 aa22.87■■□□□ 1.25
USP39-206ENST00000448971 CAMSAP1Q5T5Y3 1602 aa22.86■■□□□ 1.25
USP39-206ENST00000448971 PLEKHH2Q8IVE3 1493 aa22.85■■□□□ 1.25
USP39-206ENST00000448971 A2MP01023 1474 aa22.85■■□□□ 1.25
USP39-206ENST00000448971 PLXNC1O60486 1568 aa22.84■■□□□ 1.25
USP39-206ENST00000448971 NCKAP5LQ9HCH0 1330 aa22.84■■□□□ 1.25
USP39-206ENST00000448971 INO80Q9ULG1 1556 aaPredicted RBP22.84■■□□□ 1.25
USP39-206ENST00000448971 GGT6Q6P531 493 aa22.83■■□□□ 1.25
USP39-206ENST00000448971 IQSEC2Q5JU85 1478 aa22.83■■□□□ 1.25
USP39-206ENST00000448971 ZNF644Q9H582 1327 aaPredicted RBP22.82■■□□□ 1.24
USP39-206ENST00000448971 KANK4Q5T7N3 995 aaPredicted RBP22.82■■□□□ 1.24
USP39-206ENST00000448971 PTPRKQ15262 1439 aa22.82■■□□□ 1.24
USP39-206ENST00000448971 CLTCQ00610 1675 aaKnown RBP22.81■■□□□ 1.24
USP39-206ENST00000448971 PKD2Q13563 968 aa22.78■■□□□ 1.24
USP39-206ENST00000448971 MBD5Q9P267 1494 aa22.78■■□□□ 1.24
USP39-206ENST00000448971 ZNF335Q9H4Z2 1342 aaPredicted RBP22.78■■□□□ 1.24
USP39-206ENST00000448971 CAMSAP2Q08AD1 1489 aa22.77■■□□□ 1.24
USP39-206ENST00000448971 PLA2R1Q13018 1463 aa22.76■■□□□ 1.23
USP39-206ENST00000448971 SOCS7O14512 581 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms