RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 NISCHQ9Y2I1 1504 aa35.7■■■■□ 3.31
USP39-206ENST00000448971 ABCC9O60706 1549 aa32.35■■■□□ 2.77
USP39-206ENST00000448971 CCDC180Q9P1Z9 1646 aa32.05■■■□□ 2.72
USP39-206ENST00000448971 DNAJC5BQ9UF47 199 aa30.71■■■□□ 2.51
USP39-206ENST00000448971 RB1CC1Q8TDY2 1594 aa30.66■■■□□ 2.5
USP39-206ENST00000448971 NACADO15069 1562 aa30.41■■■□□ 2.46
USP39-206ENST00000448971 DCAF8L2P0C7V8 631 aa30.25■■■□□ 2.43
USP39-206ENST00000448971 PABPN1Q86U42 306 aaKnown RBP eCLIP30.14■■■□□ 2.42
USP39-206ENST00000448971 AEBP2Q6ZN18 517 aaPredicted RBP30.12■■■□□ 2.41
USP39-206ENST00000448971 UNC13AQ9UPW8 1703 aa29.98■■■□□ 2.39
USP39-206ENST00000448971 MYO15BQ96JP2 1530 aa29.95■■■□□ 2.38
USP39-206ENST00000448971 BICRAQ9NZM4 1560 aa29.84■■■□□ 2.37
USP39-206ENST00000448971 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
USP39-206ENST00000448971 ZCCHC6Q5VYS8 1495 aaKnown RBP29.5■■■□□ 2.31
USP39-206ENST00000448971 DCAF1Q9Y4B6 1507 aa29.47■■■□□ 2.31
USP39-206ENST00000448971 SHROOM4Q9ULL8 1493 aa29.35■■■□□ 2.29
USP39-206ENST00000448971 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.27
USP39-206ENST00000448971 SCRIBQ14160 1630 aa29.2■■■□□ 2.26
USP39-206ENST00000448971 CECR2Q9BXF3 1484 aa29.17■■■□□ 2.26
USP39-206ENST00000448971 EIF4G1Q04637 1599 aaKnown RBP29.09■■■□□ 2.25
USP39-206ENST00000448971 DNAJC5Q9H3Z4 198 aa28.34■■■□□ 2.13
USP39-206ENST00000448971 NCAPD3P42695 1498 aa28.14■■■□□ 2.09
USP39-206ENST00000448971 ATAD2BQ9ULI0 1458 aa28■■■□□ 2.07
USP39-206ENST00000448971 CUX2O14529 1486 aa27.96■■■□□ 2.07
USP39-206ENST00000448971 ERCC6Q03468 1493 aa27.9■■■□□ 2.06
USP39-206ENST00000448971 SMARCA4P51532 1647 aa27.85■■■□□ 2.05
USP39-206ENST00000448971 SMARCA2P51531 1590 aa27.85■■■□□ 2.05
USP39-206ENST00000448971 HMGXB3Q12766 1538 aa27.83■■■□□ 2.05
USP39-206ENST00000448971 NESP48681 1621 aa27.74■■■□□ 2.03
USP39-206ENST00000448971 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
USP39-206ENST00000448971 BAZ1BQ9UIG0 1483 aaKnown RBP27.65■■■□□ 2.02
USP39-206ENST00000448971 PEG3Q9GZU2 1588 aa27.62■■■□□ 2.01
USP39-206ENST00000448971 MROH2BQ7Z745 1585 aa27.51■■□□□ 1.99
USP39-206ENST00000448971 LAMC3Q9Y6N6 1575 aa27.47■■□□□ 1.99
USP39-206ENST00000448971 THOC2Q8NI27 1593 aaKnown RBP27.46■■□□□ 1.99
USP39-206ENST00000448971 PDS5BQ9NTI5 1447 aa27.34■■□□□ 1.97
USP39-206ENST00000448971 KIF21AQ7Z4S6 1674 aa27.32■■□□□ 1.96
USP39-206ENST00000448971 CADPSQ9ULU8 1353 aa27.26■■□□□ 1.95
USP39-206ENST00000448971 WIZO95785 1651 aa27.14■■□□□ 1.93
USP39-206ENST00000448971 MRC2Q9UBG0 1479 aa27.1■■□□□ 1.93
USP39-206ENST00000448971 WDR62O43379 1518 aa27.05■■□□□ 1.92
USP39-206ENST00000448971 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
USP39-206ENST00000448971 FANCD2Q9BXW9 1451 aa26.92■■□□□ 1.9
USP39-206ENST00000448971 TRIM41Q8WV44 630 aa26.91■■□□□ 1.9
USP39-206ENST00000448971 CFTRP13569 1480 aa26.89■■□□□ 1.9
USP39-206ENST00000448971 RSF1Q96T23 1441 aaPredicted RBP26.89■■□□□ 1.89
USP39-206ENST00000448971 TOP2AP11388 1531 aaKnown RBP26.75■■□□□ 1.87
USP39-206ENST00000448971 OSCARQ8IYS5 282 aa26.73■■□□□ 1.87
USP39-206ENST00000448971 URB2Q14146 1524 aaKnown RBP26.73■■□□□ 1.87
USP39-206ENST00000448971 CCDC88BA6NC98 1476 aa26.52■■□□□ 1.84
USP39-206ENST00000448971 PRDM2Q13029 1718 aa26.5■■□□□ 1.83
USP39-206ENST00000448971 ZNF608Q9ULD9 1512 aaPredicted RBP26.44■■□□□ 1.82
USP39-206ENST00000448971 IFT140Q96RY7 1462 aa26.42■■□□□ 1.82
USP39-206ENST00000448971 TOPBP1Q92547 1522 aa26.38■■□□□ 1.81
USP39-206ENST00000448971 PHF23Q9BUL5 403 aaPredicted RBP26.34■■□□□ 1.81
USP39-206ENST00000448971 RIMBP3CA6NJZ7 1639 aa26.32■■□□□ 1.8
USP39-206ENST00000448971 RIMBP3BA6NNM3 1639 aa26.32■■□□□ 1.8
USP39-206ENST00000448971 RIMBP3Q9UFD9 1639 aa26.32■■□□□ 1.8
USP39-206ENST00000448971 ABCC8Q09428 1581 aa26.3■■□□□ 1.8
USP39-206ENST00000448971 SUPT5HO00267 1087 aaKnown RBP26.23■■□□□ 1.79
USP39-206ENST00000448971 DNMBPQ6XZF7 1577 aa26.23■■□□□ 1.79
USP39-206ENST00000448971 ARHGEF11O15085 1522 aa26.23■■□□□ 1.79
USP39-206ENST00000448971 EIF4G3O43432 1585 aaKnown RBP26.2■■□□□ 1.79
USP39-206ENST00000448971 AQRO60306 1485 aaKnown RBP eCLIP26.19■■□□□ 1.782e-6■■■■□ 22.7
USP39-206ENST00000448971 TARBP1Q13395 1621 aaKnown RBP26.17■■□□□ 1.78
USP39-206ENST00000448971 CYB5RLQ6IPT4 315 aa26.11■■□□□ 1.77
USP39-206ENST00000448971 POLA1P09884 1462 aaPredicted RBP26.1■■□□□ 1.77
USP39-206ENST00000448971 CHD1O14646 1710 aa26.06■■□□□ 1.76
USP39-206ENST00000448971 FBLN2P98095 1184 aa26.04■■□□□ 1.76
USP39-206ENST00000448971 RAD54L2Q9Y4B4 1467 aa26.03■■□□□ 1.76
USP39-206ENST00000448971 SOGA1O94964 1423 aa25.99■■□□□ 1.75
USP39-206ENST00000448971 TDRD9Q8NDG6 1382 aaKnown RBP25.99■■□□□ 1.75
USP39-206ENST00000448971 ARAP1Q96P48 1450 aa25.97■■□□□ 1.75
USP39-206ENST00000448971 FGD5Q6ZNL6 1462 aa25.88■■□□□ 1.73
USP39-206ENST00000448971 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
USP39-206ENST00000448971 TRHP20396 242 aaPredicted RBP25.85■■□□□ 1.73
USP39-206ENST00000448971 CUX1P39880 1505 aa25.84■■□□□ 1.73
USP39-206ENST00000448971 WDR97A6NE52 1622 aa25.83■■□□□ 1.73
USP39-206ENST00000448971 CHMP7Q8WUX9 453 aaPredicted RBP25.82■■□□□ 1.72
USP39-206ENST00000448971 CLASP1Q7Z460 1538 aa25.79■■□□□ 1.72
USP39-206ENST00000448971 MAGI1Q96QZ7 1491 aaPredicted RBP25.78■■□□□ 1.72
USP39-206ENST00000448971 GRIN2BQ13224 1484 aa25.77■■□□□ 1.72
USP39-206ENST00000448971 SYNJ1O43426 1573 aa25.72■■□□□ 1.71
USP39-206ENST00000448971 SYNJ2O15056 1496 aa25.71■■□□□ 1.71
USP39-206ENST00000448971 GAPVD1Q14C86 1478 aa25.66■■□□□ 1.7
USP39-206ENST00000448971 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
USP39-206ENST00000448971 PBRM1Q86U86 1689 aa25.58■■□□□ 1.69
USP39-206ENST00000448971 ABCA5Q8WWZ7 1642 aa25.54■■□□□ 1.68
USP39-206ENST00000448971 WRNQ14191 1432 aaPredicted RBP eCLIP25.45■■□□□ 1.66
USP39-206ENST00000448971 GRIN2AQ12879 1464 aa25.43■■□□□ 1.66
USP39-206ENST00000448971 ERCC6L2Q5T890 1561 aa25.4■■□□□ 1.66
USP39-206ENST00000448971 NUP160Q12769 1436 aa25.39■■□□□ 1.66
USP39-206ENST00000448971 BIVM-ERCC5R4GMW8 1640 aa25.36■■□□□ 1.65
USP39-206ENST00000448971 TOP2BQ02880 1626 aa25.35■■□□□ 1.65
USP39-206ENST00000448971 ADAMTS12P58397 1594 aa25.35■■□□□ 1.65
USP39-206ENST00000448971 CEP170Q5SW79 1584 aa25.35■■□□□ 1.65
USP39-206ENST00000448971 SENP3Q9H4L4 574 aaPredicted RBP25.33■■□□□ 1.65
USP39-206ENST00000448971 FHAD1B1AJZ9 1412 aa25.32■■□□□ 1.64
USP39-206ENST00000448971 SHROOM2Q13796 1616 aa25.27■■□□□ 1.64
USP39-206ENST00000448971 ERICH3Q5RHP9 1530 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 177.5 ms