RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 ZNF316A6NFI3 1004 aaPredicted RBP3.88□□□□□ -1.79
LIG4-203ENST00000442234 CEP164Q9UPV0 1460 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 TRIM52Q96A61 297 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 LMTK3Q96Q04 1460 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 RAD54L2Q9Y4B4 1467 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 NUTM2BA6NNL0 878 aaPredicted RBP3.88□□□□□ -1.79
LIG4-203ENST00000442234 NUTM2EB1AL46 878 aaPredicted RBP3.88□□□□□ -1.79
LIG4-203ENST00000442234 AMER1Q5JTC6 1135 aaPredicted RBP3.88□□□□□ -1.79
LIG4-203ENST00000442234 GGT6Q6P531 493 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 POTEHQ6S545 545 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 NUTM2AQ8IVF1 878 aaPredicted RBP3.88□□□□□ -1.79
LIG4-203ENST00000442234 SGIP1Q9BQI5 828 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 FANCD2Q9BXW9 1451 aa3.88□□□□□ -1.79
LIG4-203ENST00000442234 KDM4FA0A1W2PPD8 638 aa3.87□□□□□ -1.79
LIG4-203ENST00000442234 MIER1Q8N108 512 aa3.87□□□□□ -1.79
LIG4-203ENST00000442234 IL27Q8NEV9 243 aa3.87□□□□□ -1.79
LIG4-203ENST00000442234 TIMELESSQ9UNS1 1208 aa3.87□□□□□ -1.79
LIG4-203ENST00000442234 FARP1Q9Y4F1 1045 aaPredicted RBP3.87□□□□□ -1.79
LIG4-203ENST00000442234 SHROOM2Q13796 1616 aa3.87□□□□□ -1.79
LIG4-203ENST00000442234 NUBP1P53384 320 aa3.86□□□□□ -1.79
LIG4-203ENST00000442234 LMOD2Q6P5Q4 547 aa3.86□□□□□ -1.79
LIG4-203ENST00000442234 SOGA1O94964 1423 aa3.86□□□□□ -1.79
LIG4-203ENST00000442234 PRKAR2AP13861 404 aaKnown RBP3.86□□□□□ -1.79
LIG4-203ENST00000442234 MEX3CQ5U5Q3 659 aaKnown RBP3.86□□□□□ -1.79
LIG4-203ENST00000442234 ZNF579Q8NAF0 562 aaKnown RBP3.86□□□□□ -1.79
LIG4-203ENST00000442234 ZMYND15Q9H091 742 aa3.86□□□□□ -1.79
LIG4-203ENST00000442234 CDK11AQ9UQ88 783 aaPredicted RBP3.86□□□□□ -1.79
LIG4-203ENST00000442234 ZBTB7CA1YPR0 619 aa3.85□□□□□ -1.79
LIG4-203ENST00000442234 KLHL34Q8N239 644 aa3.85□□□□□ -1.79
LIG4-203ENST00000442234 CLASP1Q7Z460 1538 aa3.85□□□□□ -1.79
LIG4-203ENST00000442234 NUTM2DQ5VT03 806 aaPredicted RBP3.84□□□□□ -1.8
LIG4-203ENST00000442234 BCL11BQ9C0K0 894 aaPredicted RBP3.84□□□□□ -1.8
LIG4-203ENST00000442234 CCDC9Q9Y3X0 531 aaKnown RBP3.84□□□□□ -1.8
LIG4-203ENST00000442234 SMARCA4P51532 1647 aa3.84□□□□□ -1.8
LIG4-203ENST00000442234 GSE1Q14687 1217 aa3.83□□□□□ -1.8
LIG4-203ENST00000442234 SPOCK2Q92563 424 aa3.83□□□□□ -1.8
LIG4-203ENST00000442234 CLEC11AQ9Y240 323 aa3.83□□□□□ -1.8
LIG4-203ENST00000442234 CHD1O14646 1710 aa3.83□□□□□ -1.8
LIG4-203ENST00000442234 MRC2Q9UBG0 1479 aa3.82□□□□□ -1.8
LIG4-203ENST00000442234 NUTM2FA1L443 756 aa3.82□□□□□ -1.8
LIG4-203ENST00000442234 TARBP1Q13395 1621 aaKnown RBP3.82□□□□□ -1.8
LIG4-203ENST00000442234 BAZ1AQ9NRL2 1556 aaPredicted RBP3.82□□□□□ -1.8
LIG4-203ENST00000442234 HAP1P54257 671 aaPredicted RBP3.82□□□□□ -1.8
LIG4-203ENST00000442234 MROH2BQ7Z745 1585 aa3.82□□□□□ -1.8
LIG4-203ENST00000442234 FBXO41Q8TF61 875 aa3.82□□□□□ -1.8
LIG4-203ENST00000442234 ARHGEF11O15085 1522 aa3.81□□□□□ -1.8
LIG4-203ENST00000442234 LAMC3Q9Y6N6 1575 aa3.81□□□□□ -1.8
LIG4-203ENST00000442234 FGD1P98174 961 aa3.81□□□□□ -1.8
LIG4-203ENST00000442234 RBM10P98175 930 aaKnown RBP3.81□□□□□ -1.8
LIG4-203ENST00000442234 RSPH6AQ9H0K4 717 aa3.81□□□□□ -1.8
LIG4-203ENST00000442234 IFNLR1Q8IU57 520 aaPredicted RBP3.81□□□□□ -1.8
LIG4-203ENST00000442234 NOP58Q9Y2X3 529 aaKnown RBP3.8□□□□□ -1.8
LIG4-203ENST00000442234 FANCIQ9NVI1 1328 aa3.8□□□□□ -1.8
LIG4-203ENST00000442234 WWC3Q9ULE0 1092 aa3.8□□□□□ -1.8
LIG4-203ENST00000442234 NEFMP07197 916 aa3.79□□□□□ -1.8
LIG4-203ENST00000442234 TAF7LQ5H9L4 462 aa3.79□□□□□ -1.8
LIG4-203ENST00000442234 CNGB1Q14028 1251 aaPredicted RBP3.79□□□□□ -1.8
LIG4-203ENST00000442234 GAPVD1Q14C86 1478 aa3.79□□□□□ -1.8
LIG4-203ENST00000442234 CERKQ8TCT0 537 aa3.79□□□□□ -1.8
LIG4-203ENST00000442234 PPP1R1BQ9UD71 204 aaPredicted RBP3.79□□□□□ -1.8
LIG4-203ENST00000442234 PRG4Q92954 1404 aaPredicted RBP3.79□□□□□ -1.8
LIG4-203ENST00000442234 HSP90AA2PQ14568 343 aaPredicted RBP3.78□□□□□ -1.8
LIG4-203ENST00000442234 NCAPD3P42695 1498 aa3.78□□□□□ -1.8
LIG4-203ENST00000442234 PLEKHD1A6NEE1 506 aa3.78□□□□□ -1.8
LIG4-203ENST00000442234 PPP1R15AO75807 674 aaPredicted RBP3.78□□□□□ -1.8
LIG4-203ENST00000442234 ANP32AP39687 249 aaKnown RBP3.78□□□□□ -1.8
LIG4-203ENST00000442234 AAMPQ13685 434 aa3.78□□□□□ -1.8
LIG4-203ENST00000442234 PAK3O75914 559 aaPredicted RBP3.78□□□□□ -1.8
LIG4-203ENST00000442234 CCDC61Q9Y6R9 512 aa3.78□□□□□ -1.8
LIG4-203ENST00000442234 SNAPC4Q5SXM2 1469 aa3.78□□□□□ -1.8
LIG4-203ENST00000442234 ADAMTS2O95450 1211 aa3.78□□□□□ -1.81
LIG4-203ENST00000442234 PTPRGP23470 1445 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 SOCS7O14512 581 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 PLCD3Q8N3E9 789 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 NAP1L5Q96NT1 182 aaPredicted RBP3.77□□□□□ -1.81
LIG4-203ENST00000442234 SYNJ2O15056 1496 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 PAXIP1Q6ZW49 1069 aaPredicted RBP3.77□□□□□ -1.81
LIG4-203ENST00000442234 CHIC2Q9UKJ5 165 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 NCKAP5LQ9HCH0 1330 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 CACNA1GO43497 2377 aa3.77□□□□□ -1.81
LIG4-203ENST00000442234 ZNF326Q5BKZ1 582 aaKnown RBP3.77□□□□□ -1.81
LIG4-203ENST00000442234 SP7Q8TDD2 431 aaPredicted RBP3.76□□□□□ -1.81
LIG4-203ENST00000442234 FAM212AQ96EL1 285 aa3.76□□□□□ -1.81
LIG4-203ENST00000442234 ARAP1Q96P48 1450 aa3.76□□□□□ -1.81
LIG4-203ENST00000442234 ARXQ96QS3 562 aa3.76□□□□□ -1.81
LIG4-203ENST00000442234 HSP90AA1P07900 732 aaKnown RBP3.76□□□□□ -1.81
LIG4-203ENST00000442234 CD44P16070 742 aaKnown RBP3.76□□□□□ -1.81
LIG4-203ENST00000442234 TPRNQ4KMQ1 711 aa3.76□□□□□ -1.81
LIG4-203ENST00000442234 AFAP1Q8N556 730 aa3.76□□□□□ -1.81
LIG4-203ENST00000442234 HSPA1LP34931 641 aa3.75□□□□□ -1.81
LIG4-203ENST00000442234 CHADLQ6NUI6 762 aa3.75□□□□□ -1.81
LIG4-203ENST00000442234 TAOK2Q9UL54 1235 aa3.75□□□□□ -1.81
LIG4-203ENST00000442234 SIGLEC1Q9BZZ2 1709 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 RASEFQ8IZ41 740 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 KIF12Q96FN5 646 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 TULP1O00294 542 aaPredicted RBP3.74□□□□□ -1.81
LIG4-203ENST00000442234 SOX12O15370 315 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 USP35Q9P2H5 1018 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 BRPF3Q9ULD4 1205 aa3.74□□□□□ -1.81
LIG4-203ENST00000442234 ZNF335Q9H4Z2 1342 aaPredicted RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms