RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ROCK2O75116 1388 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-207ENST00000436346 MS4A1P11836 297 aa15.42■□□□□ 0.06
CCDC88A-207ENST00000436346 CARMIL2Q6F5E8 1435 aa15.42■□□□□ 0.06
CCDC88A-207ENST00000436346 EIF3AQ14152 1382 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-207ENST00000436346 MORC1Q86VD1 984 aa15.41■□□□□ 0.06
CCDC88A-207ENST00000436346 GOLGA6L4A6NEF3 574 aa15.4■□□□□ 0.06
CCDC88A-207ENST00000436346 TNIKQ9UKE5 1360 aa15.39■□□□□ 0.05
CCDC88A-207ENST00000436346 MCCP23508 829 aa15.39■□□□□ 0.05
CCDC88A-207ENST00000436346 TMX4Q9H1E5 349 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-207ENST00000436346 CSB-PGBD3P0DP91 1061 aa15.39■□□□□ 0.05
CCDC88A-207ENST00000436346 CARMIL1Q5VZK9 1371 aa15.38■□□□□ 0.05
CCDC88A-207ENST00000436346 NRDCO43847 1150 aa15.38■□□□□ 0.05
CCDC88A-207ENST00000436346 HSCBQ8IWL3 235 aa15.37■□□□□ 0.05
CCDC88A-207ENST00000436346 GGT6Q6P531 493 aa15.36■□□□□ 0.05
CCDC88A-207ENST00000436346 KTN1Q86UP2 1357 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-207ENST00000436346 CCDC9Q9Y3X0 531 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-207ENST00000436346 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
CCDC88A-207ENST00000436346 HDGFL2Q7Z4V5 671 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-207ENST00000436346 SIN3AQ96ST3 1273 aa15.35■□□□□ 0.05
CCDC88A-207ENST00000436346 APBB1O00213 710 aa15.35■□□□□ 0.05
CCDC88A-207ENST00000436346 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
CCDC88A-207ENST00000436346 DRC7Q8IY82 874 aa15.34■□□□□ 0.05
CCDC88A-207ENST00000436346 PDS5BQ9NTI5 1447 aa15.34■□□□□ 0.05
CCDC88A-207ENST00000436346 KIAA1211Q6ZU35 1233 aa15.33■□□□□ 0.05
CCDC88A-207ENST00000436346 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-207ENST00000436346 CHMP3Q9Y3E7 222 aa15.33■□□□□ 0.04
CCDC88A-207ENST00000436346 SPRYD3Q8NCJ5 442 aa15.32■□□□□ 0.04
CCDC88A-207ENST00000436346 NAP1L5Q96NT1 182 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-207ENST00000436346 CHAF1AQ13111 956 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-207ENST00000436346 FOXD1Q16676 465 aa15.3■□□□□ 0.04
CCDC88A-207ENST00000436346 CCDC18Q5T9S5 1454 aa15.3■□□□□ 0.04
CCDC88A-207ENST00000436346 SETD5Q9C0A6 1442 aa15.3■□□□□ 0.04
CCDC88A-207ENST00000436346 FMN1Q68DA7 1419 aa15.3■□□□□ 0.04
CCDC88A-207ENST00000436346 SPAG9O60271 1321 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-207ENST00000436346 CCDC88BA6NC98 1476 aa15.29■□□□□ 0.04
CCDC88A-207ENST00000436346 KIAA2012Q0VF49 1180 aa15.29■□□□□ 0.04
CCDC88A-207ENST00000436346 GPATCH3Q96I76 525 aa15.28■□□□□ 0.04
CCDC88A-207ENST00000436346 ITPRIPQ8IWB1 547 aa15.26■□□□□ 0.03
CCDC88A-207ENST00000436346 SOGA1O94964 1423 aa15.26■□□□□ 0.03
CCDC88A-207ENST00000436346 CALD1Q05682 793 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-207ENST00000436346 G3V3G9 751 aa15.26■□□□□ 0.03
CCDC88A-207ENST00000436346 DCAF8Q5TAQ9 597 aa15.26■□□□□ 0.03
CCDC88A-207ENST00000436346 NOC3LQ8WTT2 800 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-207ENST00000436346 GORABQ5T7V8 394 aa15.25■□□□□ 0.03
CCDC88A-207ENST00000436346 PPP4R2Q9NY27 417 aa15.25■□□□□ 0.03
CCDC88A-207ENST00000436346 NOP58Q9Y2X3 529 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-207ENST00000436346 EID1Q9Y6B2 187 aa15.24■□□□□ 0.03
CCDC88A-207ENST00000436346 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
CCDC88A-207ENST00000436346 PKD2Q13563 968 aa15.24■□□□□ 0.03
CCDC88A-207ENST00000436346 IPO8O15397 1037 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-207ENST00000436346 TAF7LQ5H9L4 462 aa15.23■□□□□ 0.03
CCDC88A-207ENST00000436346 NUP155O75694 1391 aa15.23■□□□□ 0.03
CCDC88A-207ENST00000436346 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
CCDC88A-207ENST00000436346 U2AF1L5P0DN76 240 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-207ENST00000436346 U2AF1Q01081 240 aaKnown RBP eCLIP15.22■□□□□ 0.03
CCDC88A-207ENST00000436346 SETD1BQ9UPS6 1966 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-207ENST00000436346 ANKRD30AQ9BXX3 1397 aa15.21■□□□□ 0.03
CCDC88A-207ENST00000436346 NUTM2DQ5VT03 806 aaPredicted RBP15.21■□□□□ 0.03
CCDC88A-207ENST00000436346 ERICH6BQ5W0A0 696 aa15.21■□□□□ 0.03
CCDC88A-207ENST00000436346 AMER1Q5JTC6 1135 aaPredicted RBP15.21■□□□□ 0.02
CCDC88A-207ENST00000436346 PRM3Q9NNZ6 103 aa15.21■□□□□ 0.02
CCDC88A-207ENST00000436346 HSP90B1P14625 803 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-207ENST00000436346 VPS8Q8N3P4 1428 aa15.2■□□□□ 0.02
CCDC88A-207ENST00000436346 RTN4Q9NQC3 1192 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-207ENST00000436346 MSNP26038 577 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-207ENST00000436346 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.18■□□□□ 0.02
CCDC88A-207ENST00000436346 CFAP44Q96MT7 982 aa15.18■□□□□ 0.02
CCDC88A-207ENST00000436346 STK31Q9BXU1 1019 aa15.18■□□□□ 0.02
CCDC88A-207ENST00000436346 L1TD1Q5T7N2 865 aaKnown RBP15.18■□□□□ 0.02
CCDC88A-207ENST00000436346 TRIM6-TRIM34B2RNG4 842 aa15.18■□□□□ 0.02
CCDC88A-207ENST00000436346 VPS53Q5VIR6 699 aa15.17■□□□□ 0.02
CCDC88A-207ENST00000436346 NGDNQ8NEJ9 315 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-207ENST00000436346 TERF2IPQ9NYB0 399 aa15.16■□□□□ 0.02
CCDC88A-207ENST00000436346 WASHC2CQ9Y4E1 1318 aa15.16■□□□□ 0.02
CCDC88A-207ENST00000436346 LTV1Q96GA3 475 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-207ENST00000436346 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-207ENST00000436346 RASSF8Q8NHQ8 419 aa15.13■□□□□ 0.01
CCDC88A-207ENST00000436346 PDE4CQ08493 712 aa15.13■□□□□ 0.01
CCDC88A-207ENST00000436346 AMPHP49418 695 aa15.12■□□□□ 0.01
CCDC88A-207ENST00000436346 GTF2E1P29083 439 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-207ENST00000436346 FHOD3Q2V2M9 1422 aa15.12■□□□□ 0.01
CCDC88A-207ENST00000436346 FRAT2O75474 233 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-207ENST00000436346 MEX3CQ5U5Q3 659 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-207ENST00000436346 HSPA5P11021 654 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-207ENST00000436346 NUTM2FA1L443 756 aa15.11■□□□□ 0.01
CCDC88A-207ENST00000436346 TDRD9Q8NDG6 1382 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-207ENST00000436346 EFCAB2Q5VUJ9 269 aa15.11■□□□□ 0.01
CCDC88A-207ENST00000436346 SLC4A10Q6U841 1118 aa15.11■□□□□ 0.01
CCDC88A-207ENST00000436346 KIF3BO15066 747 aa15.1■□□□□ 0.01
CCDC88A-207ENST00000436346 SMC4Q9NTJ3 1288 aa15.1■□□□□ 0.01
CCDC88A-207ENST00000436346 RAB3GAP2Q9H2M9 1393 aa15.1■□□□□ 0.01
CCDC88A-207ENST00000436346 UACAQ9BZF9 1416 aa15.09■□□□□ 0.01
CCDC88A-207ENST00000436346 CHMP4AQ9BY43 222 aa15.08■□□□□ 0.01
CCDC88A-207ENST00000436346 HTATSF1O43719 755 aaKnown RBP15.08■□□□□ 0
CCDC88A-207ENST00000436346 RALBP1Q15311 655 aa15.08■□□□□ 0
CCDC88A-207ENST00000436346 CREBRFQ8IUR6 639 aa15.08■□□□□ 0
CCDC88A-207ENST00000436346 RAPGEF2Q9Y4G8 1499 aa15.08■□□□□ 0
CCDC88A-207ENST00000436346 GBP4Q96PP9 640 aa15.08■□□□□ 0
CCDC88A-207ENST00000436346 HNRNPMP52272 730 aaKnown RBP eCLIP15.07■□□□□ 0
CCDC88A-207ENST00000436346 CCDC144AA2RUR9 1427 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms