RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 CLIP1P30622 1438 aa24.75■■□□□ 1.55
UBXN4-203ENST00000416538 FYCO1Q9BQS8 1478 aa24.74■■□□□ 1.55
UBXN4-203ENST00000416538 CCDC18Q5T9S5 1454 aa24.73■■□□□ 1.55
UBXN4-203ENST00000416538 PREX2Q70Z35 1606 aa24.72■■□□□ 1.55
UBXN4-203ENST00000416538 POGZQ7Z3K3 1410 aa24.7■■□□□ 1.55
UBXN4-203ENST00000416538 MADDQ8WXG6 1647 aa24.7■■□□□ 1.54
UBXN4-203ENST00000416538 HECW2Q9P2P5 1572 aa24.7■■□□□ 1.54
UBXN4-203ENST00000416538 CDC42BPAQ5VT25 1732 aa24.69■■□□□ 1.54
UBXN4-203ENST00000416538 ZFYVE16Q7Z3T8 1539 aa24.69■■□□□ 1.54
UBXN4-203ENST00000416538 YEATS2Q9ULM3 1422 aa24.69■■□□□ 1.54
UBXN4-203ENST00000416538 ARHGAP5Q13017 1502 aa24.66■■□□□ 1.54
UBXN4-203ENST00000416538 SCAPERQ9BY12 1400 aa24.66■■□□□ 1.54
UBXN4-203ENST00000416538 CDK11AQ9UQ88 783 aaPredicted RBP24.64■■□□□ 1.54
UBXN4-203ENST00000416538 KDM5CP41229 1560 aa24.62■■□□□ 1.53
UBXN4-203ENST00000416538 RIMS1Q86UR5 1692 aaKnown RBP24.62■■□□□ 1.53
UBXN4-203ENST00000416538 ITSN2Q9NZM3 1697 aa24.62■■□□□ 1.53
UBXN4-203ENST00000416538 PTPRMP28827 1452 aa24.6■■□□□ 1.53
UBXN4-203ENST00000416538 MAGI2Q86UL8 1455 aa24.6■■□□□ 1.53
UBXN4-203ENST00000416538 ABCC1P33527 1531 aa24.6■■□□□ 1.53
UBXN4-203ENST00000416538 CEP162Q5TB80 1403 aa24.57■■□□□ 1.52
UBXN4-203ENST00000416538 ARHGEF12Q9NZN5 1544 aa24.56■■□□□ 1.52
UBXN4-203ENST00000416538 EFCAB2Q5VUJ9 269 aa24.55■■□□□ 1.52
UBXN4-203ENST00000416538 ZNF518AQ6AHZ1 1483 aa24.54■■□□□ 1.52
UBXN4-203ENST00000416538 FER1L4A9Z1Z3 1794 aa24.54■■□□□ 1.52
UBXN4-203ENST00000416538 ABCA6Q8N139 1617 aa24.53■■□□□ 1.52
UBXN4-203ENST00000416538 SAMD9LQ8IVG5 1584 aa24.53■■□□□ 1.52
UBXN4-203ENST00000416538 DIP2CQ9Y2E4 1556 aa24.53■■□□□ 1.52
UBXN4-203ENST00000416538 ARID4BQ4LE39 1312 aaPredicted RBP24.51■■□□□ 1.51
UBXN4-203ENST00000416538 C9orf84Q5VXU9 1444 aa24.48■■□□□ 1.51
UBXN4-203ENST00000416538 TRAPPC8Q9Y2L5 1435 aa24.48■■□□□ 1.51
UBXN4-203ENST00000416538 KIDINS220Q9ULH0 1771 aa24.47■■□□□ 1.51
UBXN4-203ENST00000416538 ATP10AO60312 1499 aa24.47■■□□□ 1.51
UBXN4-203ENST00000416538 GPATCH8Q9UKJ3 1502 aaKnown RBP24.46■■□□□ 1.51
UBXN4-203ENST00000416538 SYCP2Q9BX26 1530 aa24.45■■□□□ 1.5
UBXN4-203ENST00000416538 AFAP1Q8N556 730 aa24.44■■□□□ 1.5
UBXN4-203ENST00000416538 TIAM1Q13009 1591 aa24.44■■□□□ 1.5
UBXN4-203ENST00000416538 REREQ9P2R6 1566 aa24.44■■□□□ 1.5
UBXN4-203ENST00000416538 EHBP1L1Q8N3D4 1523 aa24.44■■□□□ 1.5
UBXN4-203ENST00000416538 MLH3Q9UHC1 1453 aa24.42■■□□□ 1.5
UBXN4-203ENST00000416538 LMTK3Q96Q04 1460 aa24.38■■□□□ 1.49
UBXN4-203ENST00000416538 MTUS2Q5JR59 1369 aa24.37■■□□□ 1.49
UBXN4-203ENST00000416538 LOC105371045A0A1W2PR82 267 aa24.36■■□□□ 1.49
UBXN4-203ENST00000416538 INO80Q9ULG1 1556 aaPredicted RBP24.35■■□□□ 1.49
UBXN4-203ENST00000416538 MLECQ14165 292 aa24.35■■□□□ 1.49
UBXN4-203ENST00000416538 PLPPR3Q6T4P5 718 aa24.32■■□□□ 1.48
UBXN4-203ENST00000416538 AGLP35573 1532 aa24.31■■□□□ 1.48
UBXN4-203ENST00000416538 SUPT6HQ7KZ85 1726 aaKnown RBP24.31■■□□□ 1.48
UBXN4-203ENST00000416538 CCNB3Q8WWL7 1395 aa24.3■■□□□ 1.48
UBXN4-203ENST00000416538 ATP7AQ04656 1500 aa24.3■■□□□ 1.48
UBXN4-203ENST00000416538 VPS8Q8N3P4 1428 aa24.29■■□□□ 1.48
UBXN4-203ENST00000416538 ZNF777Q9ULD5 760 aaPredicted RBP24.29■■□□□ 1.48
UBXN4-203ENST00000416538 KIAA1107Q9UPP5 1409 aa24.27■■□□□ 1.48
UBXN4-203ENST00000416538 C3P01024 1663 aa24.27■■□□□ 1.48
UBXN4-203ENST00000416538 NCOA2Q15596 1464 aa24.26■■□□□ 1.47
UBXN4-203ENST00000416538 PLEKHH2Q8IVE3 1493 aa24.26■■□□□ 1.47
UBXN4-203ENST00000416538 PLXNC1O60486 1568 aa24.26■■□□□ 1.47
UBXN4-203ENST00000416538 PREX1Q8TCU6 1659 aa24.25■■□□□ 1.47
UBXN4-203ENST00000416538 HNRNPMP52272 730 aaKnown RBP eCLIP24.24■■□□□ 1.47
UBXN4-203ENST00000416538 CFDP1Q9UEE9 299 aaPredicted RBP24.24■■□□□ 1.47
UBXN4-203ENST00000416538 MYT1LQ9UL68 1186 aa24.24■■□□□ 1.47
UBXN4-203ENST00000416538 MBD5Q9P267 1494 aa24.23■■□□□ 1.47
UBXN4-203ENST00000416538 ZNF644Q9H582 1327 aaPredicted RBP24.22■■□□□ 1.47
UBXN4-203ENST00000416538 ADGBQ8N7X0 1667 aa24.21■■□□□ 1.47
UBXN4-203ENST00000416538 LRRC9Q6ZRR7 1453 aa24.19■■□□□ 1.46
UBXN4-203ENST00000416538 CAMSAP2Q08AD1 1489 aa24.18■■□□□ 1.46
UBXN4-203ENST00000416538 SPAG9O60271 1321 aaKnown RBP24.17■■□□□ 1.46
UBXN4-203ENST00000416538 MROH2AA6NES4 1674 aa24.16■■□□□ 1.46
UBXN4-203ENST00000416538 CEBPAP49715 358 aaPredicted RBP24.16■■□□□ 1.46
UBXN4-203ENST00000416538 HSPA2P54652 639 aa24.15■■□□□ 1.46
UBXN4-203ENST00000416538 A2MP01023 1474 aa24.13■■□□□ 1.45
UBXN4-203ENST00000416538 CLTCQ00610 1675 aaKnown RBP24.13■■□□□ 1.45
UBXN4-203ENST00000416538 MAP3K1Q13233 1512 aa24.13■■□□□ 1.45
UBXN4-203ENST00000416538 SETD1BQ9UPS6 1966 aaKnown RBP24.12■■□□□ 1.45
UBXN4-203ENST00000416538 ARHGEF5Q12774 1597 aa24.09■■□□□ 1.45
UBXN4-203ENST00000416538 CCDC141Q6ZP82 1450 aa24.09■■□□□ 1.45
UBXN4-203ENST00000416538 STRCQ7RTU9 1775 aa24.08■■□□□ 1.45
UBXN4-203ENST00000416538 KANK4Q5T7N3 995 aaPredicted RBP24.07■■□□□ 1.44
UBXN4-203ENST00000416538 ILDR1Q86SU0 546 aaPredicted RBP24.07■■□□□ 1.44
UBXN4-203ENST00000416538 RTEL1-TNFRSF6BF6WH68 1400 aa24.05■■□□□ 1.44
UBXN4-203ENST00000416538 CNTLNQ9NXG0 1405 aa24.05■■□□□ 1.44
UBXN4-203ENST00000416538 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
UBXN4-203ENST00000416538 MAST1Q9Y2H9 1570 aa23.99■■□□□ 1.43
UBXN4-203ENST00000416538 MYO3AQ8NEV4 1616 aa23.99■■□□□ 1.43
UBXN4-203ENST00000416538 MYOM3Q5VTT5 1437 aa23.98■■□□□ 1.43
UBXN4-203ENST00000416538 CROCC2H7BZ55 1655 aa23.97■■□□□ 1.43
UBXN4-203ENST00000416538 ZNF142P52746 1687 aaPredicted RBP23.97■■□□□ 1.43
UBXN4-203ENST00000416538 NPATQ14207 1427 aa23.94■■□□□ 1.42
UBXN4-203ENST00000416538 ZMYM3Q14202 1370 aa23.94■■□□□ 1.42
UBXN4-203ENST00000416538 DHX29Q7Z478 1369 aaKnown RBP23.94■■□□□ 1.42
UBXN4-203ENST00000416538 ESF1Q9H501 851 aaKnown RBP23.93■■□□□ 1.42
UBXN4-203ENST00000416538 PTPRKQ15262 1439 aa23.92■■□□□ 1.42
UBXN4-203ENST00000416538 MIA2Q96PC5 1412 aa23.92■■□□□ 1.42
UBXN4-203ENST00000416538 RNF17Q9BXT8 1623 aaKnown RBP23.91■■□□□ 1.42
UBXN4-203ENST00000416538 PTPN23Q9H3S7 1636 aa23.91■■□□□ 1.42
UBXN4-203ENST00000416538 GGT6Q6P531 493 aa23.9■■□□□ 1.42
UBXN4-203ENST00000416538 KDM5DQ9BY66 1539 aa23.89■■□□□ 1.41
UBXN4-203ENST00000416538 MROH1Q8NDA8 1641 aa23.88■■□□□ 1.41
UBXN4-203ENST00000416538 CEP170BQ9Y4F5 1589 aaPredicted RBP23.87■■□□□ 1.41
UBXN4-203ENST00000416538 EIF2AK4Q9P2K8 1649 aaKnown RBP23.87■■□□□ 1.41
UBXN4-203ENST00000416538 FAM135AQ9P2D6 1515 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms