RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 CFAP44Q96MT7 982 aa9.93□□□□□ -0.82
HMGB3P23-201ENST00000414981 TMC2Q8TDI7 906 aa9.91□□□□□ -0.82
HMGB3P23-201ENST00000414981 C2orf72A6NCS6 295 aa9.9□□□□□ -0.82
HMGB3P23-201ENST00000414981 GPHNQ9NQX3 736 aaPredicted RBP9.9□□□□□ -0.82
HMGB3P23-201ENST00000414981 PDE4AP27815 886 aa9.89□□□□□ -0.83
HMGB3P23-201ENST00000414981 FAM163AQ96GL9 167 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P23-201ENST00000414981 CRISPLD2Q9H0B8 497 aa9.86□□□□□ -0.83
HMGB3P23-201ENST00000414981 FOXK1P85037 733 aa9.85□□□□□ -0.83
HMGB3P23-201ENST00000414981 DOK7Q18PE1 504 aa9.85□□□□□ -0.83
HMGB3P23-201ENST00000414981 HOXB3P14651 431 aaPredicted RBP9.84□□□□□ -0.83
HMGB3P23-201ENST00000414981 NCKAP5LQ9HCH0 1330 aa9.82□□□□□ -0.84
HMGB3P23-201ENST00000414981 CADPS2Q86UW7 1296 aa9.82□□□□□ -0.84
HMGB3P23-201ENST00000414981 ST18O60284 1047 aa9.81□□□□□ -0.84
HMGB3P23-201ENST00000414981 SLC34A2O95436 690 aa9.81□□□□□ -0.84
HMGB3P23-201ENST00000414981 PLCB2Q00722 1185 aa9.81□□□□□ -0.84
HMGB3P23-201ENST00000414981 RIMBP2O15034 1052 aa9.8□□□□□ -0.84
HMGB3P23-201ENST00000414981 DSG2Q14126 1118 aa9.8□□□□□ -0.84
HMGB3P23-201ENST00000414981 LARP6Q9BRS8 491 aaKnown RBP9.8□□□□□ -0.84
HMGB3P23-201ENST00000414981 ZSWIM6Q9HCJ5 1215 aa9.8□□□□□ -0.84
HMGB3P23-201ENST00000414981 LCE2DQ5TA82 110 aaPredicted RBP9.79□□□□□ -0.84
HMGB3P23-201ENST00000414981 PLPP6Q8IY26 295 aa9.79□□□□□ -0.84
HMGB3P23-201ENST00000414981 ZNF710Q8N1W2 664 aa9.79□□□□□ -0.84
HMGB3P23-201ENST00000414981 MFSD10Q14728 455 aa9.78□□□□□ -0.84
HMGB3P23-201ENST00000414981 PPP1R15BQ5SWA1 713 aa9.76□□□□□ -0.85
HMGB3P23-201ENST00000414981 DDX27Q96GQ7 796 aaKnown RBP9.76□□□□□ -0.85
HMGB3P23-201ENST00000414981 HOXB1P14653 301 aaPredicted RBP9.75□□□□□ -0.85
HMGB3P23-201ENST00000414981 TSHZ2Q9NRE2 1034 aa9.75□□□□□ -0.85
HMGB3P23-201ENST00000414981 GPR153Q6NV75 609 aa9.74□□□□□ -0.85
HMGB3P23-201ENST00000414981 PTCD2Q8WV60 388 aaKnown RBP9.73□□□□□ -0.85
HMGB3P23-201ENST00000414981 TBC1D12O60347 775 aa9.7□□□□□ -0.86
HMGB3P23-201ENST00000414981 ARSIQ5FYB1 569 aa9.7□□□□□ -0.86
HMGB3P23-201ENST00000414981 PCDHGA4Q9Y5G9 962 aa9.7□□□□□ -0.86
HMGB3P23-201ENST00000414981 POTEMA6NI47 508 aa9.68□□□□□ -0.86
HMGB3P23-201ENST00000414981 POTEGQ6S5H5 508 aa9.68□□□□□ -0.86
HMGB3P23-201ENST00000414981 OXER1Q8TDS5 423 aa9.68□□□□□ -0.86
HMGB3P23-201ENST00000414981 WDR70Q9NW82 654 aa9.68□□□□□ -0.86
HMGB3P23-201ENST00000414981 CAMK2BQ13554 666 aa9.67□□□□□ -0.86
HMGB3P23-201ENST00000414981 MARVELD3Q96A59 401 aa9.66□□□□□ -0.86
HMGB3P23-201ENST00000414981 EMP3P54852 163 aa9.65□□□□□ -0.86
HMGB3P23-201ENST00000414981 KDM4FA0A1W2PPD8 638 aa9.63□□□□□ -0.87
HMGB3P23-201ENST00000414981 KHSRPQ92945 711 aaKnown RBP eCLIP9.63□□□□□ -0.87
HMGB3P23-201ENST00000414981 PCDH10Q9P2E7 1040 aa9.63□□□□□ -0.87
HMGB3P23-201ENST00000414981 HAP1P54257 671 aaPredicted RBP9.62□□□□□ -0.87
HMGB3P23-201ENST00000414981 E2F4Q16254 413 aa9.62□□□□□ -0.87
HMGB3P23-201ENST00000414981 EMILIN3Q9NT22 766 aa9.62□□□□□ -0.87
HMGB3P23-201ENST00000414981 NUDT7P0C024 238 aa9.61□□□□□ -0.87
HMGB3P23-201ENST00000414981 MAP3K9P80192 1104 aa9.61□□□□□ -0.87
HMGB3P23-201ENST00000414981 ERBB3P21860 1342 aa9.6□□□□□ -0.87
HMGB3P23-201ENST00000414981 FAM205CA6NFA0 338 aa9.6□□□□□ -0.87
HMGB3P23-201ENST00000414981 ZNF316A6NFI3 1004 aaPredicted RBP9.6□□□□□ -0.87
HMGB3P23-201ENST00000414981 UPF1Q92900 1129 aaKnown RBP eCLIP9.6□□□□□ -0.87
HMGB3P23-201ENST00000414981 ANO8Q9HCE9 1232 aaPredicted RBP9.6□□□□□ -0.87
HMGB3P23-201ENST00000414981 ARIH1Q9Y4X5 557 aaPredicted RBP9.59□□□□□ -0.87
HMGB3P23-201ENST00000414981 HS3ST6Q96QI5 342 aa9.58□□□□□ -0.88
HMGB3P23-201ENST00000414981 LHX6Q9UPM6 363 aa9.57□□□□□ -0.88
HMGB3P23-201ENST00000414981 POTEB3A0JP26 581 aa9.56□□□□□ -0.88
HMGB3P23-201ENST00000414981 PSDA5PKW4 1024 aaPredicted RBP9.56□□□□□ -0.88
HMGB3P23-201ENST00000414981 POTEBQ6S5H4 581 aa9.56□□□□□ -0.88
HMGB3P23-201ENST00000414981 EVI5O60447 810 aa9.55□□□□□ -0.88
HMGB3P23-201ENST00000414981 VSIG10Q8N0Z9 540 aa9.55□□□□□ -0.88
HMGB3P23-201ENST00000414981 VARS2Q5ST30 1063 aaKnown RBP9.54□□□□□ -0.88
HMGB3P23-201ENST00000414981 CDAN1Q8IWY9 1227 aa9.53□□□□□ -0.88
HMGB3P23-201ENST00000414981 ZNF687Q8N1G0 1237 aa9.53□□□□□ -0.88
HMGB3P23-201ENST00000414981 DPYSL4O14531 572 aa9.52□□□□□ -0.89
HMGB3P23-201ENST00000414981 SPDYE16A6NNV3 312 aaPredicted RBP9.51□□□□□ -0.89
HMGB3P23-201ENST00000414981 KDM2AQ9Y2K7 1162 aa9.51□□□□□ -0.89
HMGB3P23-201ENST00000414981 ARHGEF1Q92888 912 aaKnown RBP9.5□□□□□ -0.89
HMGB3P23-201ENST00000414981 PTGER2P43116 358 aa9.49□□□□□ -0.89
HMGB3P23-201ENST00000414981 P3H3Q8IVL6 736 aa9.48□□□□□ -0.89
HMGB3P23-201ENST00000414981 FOSBP53539 338 aa9.47□□□□□ -0.89
HMGB3P23-201ENST00000414981 PDIA6Q15084 440 aa9.47□□□□□ -0.89
HMGB3P23-201ENST00000414981 PPP4R3BQ5MIZ7 849 aa9.47□□□□□ -0.89
HMGB3P23-201ENST00000414981 JPH4Q96JJ6 628 aa9.46□□□□□ -0.9
HMGB3P23-201ENST00000414981 KCNV2Q8TDN2 545 aa9.45□□□□□ -0.9
HMGB3P23-201ENST00000414981 PHF14O94880 888 aa9.44□□□□□ -0.9
HMGB3P23-201ENST00000414981 PBX2P40425 430 aa9.44□□□□□ -0.9
HMGB3P23-201ENST00000414981 ZNF454Q8N9F8 522 aa9.44□□□□□ -0.9
HMGB3P23-201ENST00000414981 EPAS1Q99814 870 aa9.42□□□□□ -0.9
HMGB3P23-201ENST00000414981 KRTAP3-3Q9BYR6 98 aa9.42□□□□□ -0.9
HMGB3P23-201ENST00000414981 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
HMGB3P23-201ENST00000414981 ARHGAP33O14559 1287 aa9.41□□□□□ -0.9
HMGB3P23-201ENST00000414981 ZDHHC16Q969W1 377 aa9.41□□□□□ -0.9
HMGB3P23-201ENST00000414981 PCDHGA10Q9Y5H3 936 aa9.41□□□□□ -0.9
HMGB3P23-201ENST00000414981 FBXW7Q969H0 707 aa9.4□□□□□ -0.9
HMGB3P23-201ENST00000414981 BCL2L12Q9HB09 334 aa9.4□□□□□ -0.9
HMGB3P23-201ENST00000414981 TYW1BQ6NUM6 668 aa9.39□□□□□ -0.91
HMGB3P23-201ENST00000414981 POTEEQ6S8J3 1075 aa9.39□□□□□ -0.91
HMGB3P23-201ENST00000414981 DDX12PQ92771 950 aa9.37□□□□□ -0.91
HMGB3P23-201ENST00000414981 ADAM33Q9BZ11 813 aa9.36□□□□□ -0.91
HMGB3P23-201ENST00000414981 PTPREP23469 700 aa9.35□□□□□ -0.91
HMGB3P23-201ENST00000414981 KCNH8Q96L42 1107 aa9.35□□□□□ -0.91
HMGB3P23-201ENST00000414981 AXIN2Q9Y2T1 843 aa9.35□□□□□ -0.91
HMGB3P23-201ENST00000414981 LSM11P83369 360 aaKnown RBP eCLIP9.34□□□□□ -0.91
HMGB3P23-201ENST00000414981 GRXCR2A6NFK2 248 aa9.33□□□□□ -0.92
HMGB3P23-201ENST00000414981 PSEN2P49810 448 aa9.33□□□□□ -0.92
HMGB3P23-201ENST00000414981 OSBPP22059 807 aa9.32□□□□□ -0.92
HMGB3P23-201ENST00000414981 C6orf132Q5T0Z8 1188 aa9.32□□□□□ -0.92
HMGB3P23-201ENST00000414981 SLC4A5Q9BY07 1137 aa9.32□□□□□ -0.92
HMGB3P23-201ENST00000414981 TK2O00142 265 aa9.31□□□□□ -0.92
HMGB3P23-201ENST00000414981 NBR1Q14596 966 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms