RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 PRKCSHP14314 528 aaPredicted RBP9.39□□□□□ -0.91
BRCA1-204ENST00000412061 P3H3Q8IVL6 736 aa9.39□□□□□ -0.91
BRCA1-204ENST00000412061 PPP1R37O75864 691 aa9.38□□□□□ -0.91
BRCA1-204ENST00000412061 TPRNQ4KMQ1 711 aa9.38□□□□□ -0.91
BRCA1-204ENST00000412061 CDAN1Q8IWY9 1227 aa9.38□□□□□ -0.91
BRCA1-204ENST00000412061 MKRN3Q13064 507 aaKnown RBP9.35□□□□□ -0.91
BRCA1-204ENST00000412061 OCEL1Q9H607 264 aa9.35□□□□□ -0.91
BRCA1-204ENST00000412061 MS4A4AQ96JQ5 239 aa9.32□□□□□ -0.92
BRCA1-204ENST00000412061 KCNV2Q8TDN2 545 aa9.3□□□□□ -0.92
BRCA1-204ENST00000412061 PDCD7Q8N8D1 485 aaKnown RBP9.29□□□□□ -0.92
BRCA1-204ENST00000412061 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.27□□□□□ -0.93
BRCA1-204ENST00000412061 PDE4AP27815 886 aa9.26□□□□□ -0.93
BRCA1-204ENST00000412061 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.26□□□□□ -0.93
BRCA1-204ENST00000412061 E2F4Q16254 413 aa9.25□□□□□ -0.93
BRCA1-204ENST00000412061 NCKAP5LQ9HCH0 1330 aa9.24□□□□□ -0.93
BRCA1-204ENST00000412061 ILDR1Q86SU0 546 aaPredicted RBP9.24□□□□□ -0.93
BRCA1-204ENST00000412061 MARVELD3Q96A59 401 aa9.24□□□□□ -0.93
BRCA1-204ENST00000412061 ARHGEF1Q92888 912 aaKnown RBP9.23□□□□□ -0.93
BRCA1-204ENST00000412061 LARP6Q9BRS8 491 aaKnown RBP9.23□□□□□ -0.93
BRCA1-204ENST00000412061 TMEM121BQ9BXQ6 578 aaPredicted RBP9.22□□□□□ -0.93
BRCA1-204ENST00000412061 CRISPLD2Q9H0B8 497 aa9.22□□□□□ -0.93
BRCA1-204ENST00000412061 MFSD10Q14728 455 aa9.21□□□□□ -0.94
BRCA1-204ENST00000412061 DDX27Q96GQ7 796 aaKnown RBP9.2□□□□□ -0.94
BRCA1-204ENST00000412061 SNPHO15079 494 aa9.19□□□□□ -0.94
BRCA1-204ENST00000412061 C3orf67Q6ZVT6 689 aa9.18□□□□□ -0.94
BRCA1-204ENST00000412061 SPNS2Q8IVW8 549 aa9.17□□□□□ -0.94
BRCA1-204ENST00000412061 TULP1O00294 542 aaPredicted RBP9.16□□□□□ -0.94
BRCA1-204ENST00000412061 MMRN1Q13201 1228 aa9.16□□□□□ -0.94
BRCA1-204ENST00000412061 DPY19L2Q6NUT2 758 aa9.15□□□□□ -0.94
BRCA1-204ENST00000412061 L3MBTL3Q96JM7 780 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-204ENST00000412061 POTEB3A0JP26 581 aa9.12□□□□□ -0.95
BRCA1-204ENST00000412061 CAMK2BQ13554 666 aa9.12□□□□□ -0.95
BRCA1-204ENST00000412061 LMOD2Q6P5Q4 547 aa9.12□□□□□ -0.95
BRCA1-204ENST00000412061 POTEBQ6S5H4 581 aa9.12□□□□□ -0.95
BRCA1-204ENST00000412061 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.12□□□□□ -0.95
BRCA1-204ENST00000412061 MICALL2Q8IY33 904 aa9.12□□□□□ -0.95
BRCA1-204ENST00000412061 GPHNQ9NQX3 736 aaPredicted RBP9.12□□□□□ -0.95
BRCA1-204ENST00000412061 EMP3P54852 163 aa9.11□□□□□ -0.95
BRCA1-204ENST00000412061 PPP1R15BQ5SWA1 713 aa9.11□□□□□ -0.95
BRCA1-204ENST00000412061 ARIH1Q9Y4X5 557 aaPredicted RBP9.11□□□□□ -0.95
BRCA1-204ENST00000412061 G3V3G9 751 aa9.1□□□□□ -0.95
BRCA1-204ENST00000412061 TESPA1A2RU30 521 aaPredicted RBP9.08□□□□□ -0.96
BRCA1-204ENST00000412061 SEMA3EO15041 775 aa9.08□□□□□ -0.96
BRCA1-204ENST00000412061 TMC2Q8TDI7 906 aa9.08□□□□□ -0.96
BRCA1-204ENST00000412061 BOLA1Q9Y3E2 137 aa9.08□□□□□ -0.96
BRCA1-204ENST00000412061 HS3ST6Q96QI5 342 aa9.07□□□□□ -0.96
BRCA1-204ENST00000412061 KRTAP3-3Q9BYR6 98 aa9.07□□□□□ -0.96
BRCA1-204ENST00000412061 KRTAP3-2Q9BYR7 98 aa9.07□□□□□ -0.96
BRCA1-204ENST00000412061 FAM205CA6NFA0 338 aa9.06□□□□□ -0.96
BRCA1-204ENST00000412061 DSG2Q14126 1118 aa9.05□□□□□ -0.96
BRCA1-204ENST00000412061 SMYD5Q6GMV2 418 aa9.05□□□□□ -0.96
BRCA1-204ENST00000412061 HOXB3P14651 431 aaPredicted RBP9.05□□□□□ -0.96
BRCA1-204ENST00000412061 FOXK1P85037 733 aa9.05□□□□□ -0.96
BRCA1-204ENST00000412061 C2orf72A6NCS6 295 aa9□□□□□ -0.97
BRCA1-204ENST00000412061 KIF3CO14782 793 aa9□□□□□ -0.97
BRCA1-204ENST00000412061 PLPP6Q8IY26 295 aa9□□□□□ -0.97
BRCA1-204ENST00000412061 EMILIN3Q9NT22 766 aa9□□□□□ -0.97
BRCA1-204ENST00000412061 SPDYE16A6NNV3 312 aaPredicted RBP8.99□□□□□ -0.97
BRCA1-204ENST00000412061 DPYSL4O14531 572 aa8.99□□□□□ -0.97
BRCA1-204ENST00000412061 ZC3H15Q8WU90 426 aaKnown RBP8.98□□□□□ -0.97
BRCA1-204ENST00000412061 PDIA6Q15084 440 aa8.96□□□□□ -0.98
BRCA1-204ENST00000412061 HOXB1P14653 301 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-204ENST00000412061 MLLT3P42568 568 aaPredicted RBP8.94□□□□□ -0.98
BRCA1-204ENST00000412061 TMEM92Q6UXU6 159 aa8.93□□□□□ -0.98
BRCA1-204ENST00000412061 ZNF710Q8N1W2 664 aa8.93□□□□□ -0.98
BRCA1-204ENST00000412061 MAP3K9P80192 1104 aa8.92□□□□□ -0.98
BRCA1-204ENST00000412061 DOK7Q18PE1 504 aa8.91□□□□□ -0.98
BRCA1-204ENST00000412061 ERBB3P21860 1342 aa8.9□□□□□ -0.98
BRCA1-204ENST00000412061 ZMYND10O75800 440 aa8.89□□□□□ -0.99
BRCA1-204ENST00000412061 RBM26Q5T8P6 1007 aaKnown RBP8.89□□□□□ -0.99
BRCA1-204ENST00000412061 GPIHBP1Q8IV16 184 aa8.89□□□□□ -0.99
BRCA1-204ENST00000412061 UPF1Q92900 1129 aaKnown RBP eCLIP8.89□□□□□ -0.99
BRCA1-204ENST00000412061 OXER1Q8TDS5 423 aa8.87□□□□□ -0.99
BRCA1-204ENST00000412061 SLC24A3Q9HC58 644 aa8.87□□□□□ -0.99
BRCA1-204ENST00000412061 VARS2Q5ST30 1063 aaKnown RBP8.86□□□□□ -0.99
BRCA1-204ENST00000412061 TBC1D12O60347 775 aa8.85□□□□□ -0.99
BRCA1-204ENST00000412061 BARGINQ6ZT62 677 aa8.85□□□□□ -0.99
BRCA1-204ENST00000412061 GRXCR2A6NFK2 248 aa8.83□□□□□ -1
BRCA1-204ENST00000412061 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
BRCA1-204ENST00000412061 RIMBP2O15034 1052 aa8.82□□□□□ -1
BRCA1-204ENST00000412061 PTGER2P43116 358 aa8.82□□□□□ -1
BRCA1-204ENST00000412061 TMEM132AQ24JP5 1023 aa8.82□□□□□ -1
BRCA1-204ENST00000412061 BRPF1P55201 1214 aaPredicted RBP8.81□□□□□ -1
BRCA1-204ENST00000412061 GPR153Q6NV75 609 aa8.81□□□□□ -1
BRCA1-204ENST00000412061 PTCD2Q8WV60 388 aaKnown RBP8.81□□□□□ -1
BRCA1-204ENST00000412061 TIMELESSQ9UNS1 1208 aa8.81□□□□□ -1
BRCA1-204ENST00000412061 EVI5O60447 810 aa8.8□□□□□ -1
BRCA1-204ENST00000412061 SLC34A2O95436 690 aa8.8□□□□□ -1
BRCA1-204ENST00000412061 NEUROD2Q15784 382 aa8.8□□□□□ -1
BRCA1-204ENST00000412061 KRI1Q8N9T8 703 aaKnown RBP8.8□□□□□ -1
BRCA1-204ENST00000412061 ZSWIM6Q9HCJ5 1215 aa8.8□□□□□ -1
BRCA1-204ENST00000412061 DDX12PQ92771 950 aa8.79□□□□□ -1
BRCA1-204ENST00000412061 RNF166Q96A37 237 aaPredicted RBP8.79□□□□□ -1
BRCA1-204ENST00000412061 AK7Q96M32 723 aa8.79□□□□□ -1
BRCA1-204ENST00000412061 NUTM2FA1L443 756 aa8.78□□□□□ -1
BRCA1-204ENST00000412061 OSBPP22059 807 aa8.78□□□□□ -1
BRCA1-204ENST00000412061 ZNF687Q8N1G0 1237 aa8.78□□□□□ -1
BRCA1-204ENST00000412061 DAXXQ9UER7 740 aaPredicted RBP8.77□□□□□ -1.01
BRCA1-204ENST00000412061 GPR37O15354 613 aa8.76□□□□□ -1.01
BRCA1-204ENST00000412061 ARSIQ5FYB1 569 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms