RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 RIMBP3Q9UFD9 1639 aa8.31□□□□□ -1.08
EPHA4-202ENST00000409854 FAM50AQ14320 339 aaKnown RBP8.3□□□□□ -1.08
EPHA4-202ENST00000409854 ARHGEF5Q12774 1597 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 SAMD9LQ8IVG5 1584 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 HFM1A2PYH4 1435 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 ABCA9Q8IUA7 1624 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 SETD5Q9C0A6 1442 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 ARAP3Q8WWN8 1544 aa8.29□□□□□ -1.08
EPHA4-202ENST00000409854 ZEB1P37275 1124 aaPredicted RBP8.28□□□□□ -1.08
EPHA4-202ENST00000409854 DAPK1P53355 1430 aa8.28□□□□□ -1.08
EPHA4-202ENST00000409854 WDR7Q9Y4E6 1490 aa8.28□□□□□ -1.08
EPHA4-202ENST00000409854 RAB3GAP2Q9H2M9 1393 aa8.27□□□□□ -1.09
EPHA4-202ENST00000409854 ABCC5O15440 1437 aa8.27□□□□□ -1.09
EPHA4-202ENST00000409854 SHANK2Q9UPX8 1470 aa8.27□□□□□ -1.09
EPHA4-202ENST00000409854 NAIPQ13075 1403 aa8.26□□□□□ -1.09
EPHA4-202ENST00000409854 ADGRL2O95490 1459 aa8.26□□□□□ -1.09
EPHA4-202ENST00000409854 ROCK1Q13464 1354 aa8.26□□□□□ -1.09
EPHA4-202ENST00000409854 DHX57Q6P158 1386 aaKnown RBP8.26□□□□□ -1.09
EPHA4-202ENST00000409854 ITGAEP38570 1179 aa8.26□□□□□ -1.09
EPHA4-202ENST00000409854 CCER1Q8TC90 406 aaPredicted RBP8.25□□□□□ -1.09
EPHA4-202ENST00000409854 MAST1Q9Y2H9 1570 aa8.25□□□□□ -1.09
EPHA4-202ENST00000409854 CFDP1Q9UEE9 299 aaPredicted RBP8.24□□□□□ -1.09
EPHA4-202ENST00000409854 ASXL2Q76L83 1435 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 MAPKBP1O60336 1514 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 ARHGAP5Q13017 1502 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 KDM6BO15054 1643 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 ZNF644Q9H582 1327 aaPredicted RBP8.24□□□□□ -1.09
EPHA4-202ENST00000409854 PLCH2O75038 1416 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 MBD5Q9P267 1494 aa8.24□□□□□ -1.09
EPHA4-202ENST00000409854 CLSPNQ9HAW4 1339 aa8.23□□□□□ -1.09
EPHA4-202ENST00000409854 ABCC1P33527 1531 aa8.23□□□□□ -1.09
EPHA4-202ENST00000409854 PLEKHH2Q8IVE3 1493 aa8.23□□□□□ -1.09
EPHA4-202ENST00000409854 SYCP2Q9BX26 1530 aa8.22□□□□□ -1.09
EPHA4-202ENST00000409854 KIAA1107Q9UPP5 1409 aa8.22□□□□□ -1.09
EPHA4-202ENST00000409854 CCDC141Q6ZP82 1450 aa8.21□□□□□ -1.09
EPHA4-202ENST00000409854 PLXNC1O60486 1568 aa8.21□□□□□ -1.09
EPHA4-202ENST00000409854 CFAP74Q9C0B2 1584 aa8.21□□□□□ -1.1
EPHA4-202ENST00000409854 NCOA1Q15788 1441 aa8.2□□□□□ -1.1
EPHA4-202ENST00000409854 MAP3K4Q9Y6R4 1608 aa8.2□□□□□ -1.1
EPHA4-202ENST00000409854 ARHGEF12Q9NZN5 1544 aa8.19□□□□□ -1.1
EPHA4-202ENST00000409854 GLI2P10070 1586 aa8.19□□□□□ -1.1
EPHA4-202ENST00000409854 C9orf84Q5VXU9 1444 aa8.19□□□□□ -1.1
EPHA4-202ENST00000409854 RSPH4AQ5TD94 716 aa8.17□□□□□ -1.1
EPHA4-202ENST00000409854 KCNH8Q96L42 1107 aa8.17□□□□□ -1.1
EPHA4-202ENST00000409854 ZNF777Q9ULD5 760 aaPredicted RBP8.17□□□□□ -1.1
EPHA4-202ENST00000409854 ACIN1Q9UKV3 1341 aaKnown RBP8.17□□□□□ -1.1
EPHA4-202ENST00000409854 ANKRD30AQ9BXX3 1397 aa8.17□□□□□ -1.1
EPHA4-202ENST00000409854 INO80Q9ULG1 1556 aaPredicted RBP8.17□□□□□ -1.1
EPHA4-202ENST00000409854 NPM1P06748 294 aaKnown RBP eCLIP8.17□□□□□ -1.1
EPHA4-202ENST00000409854 FANCAO15360 1455 aa8.17□□□□□ -1.1
EPHA4-202ENST00000409854 CHIC2Q9UKJ5 165 aa8.16□□□□□ -1.1
EPHA4-202ENST00000409854 DIP2BQ9P265 1576 aa8.16□□□□□ -1.1
EPHA4-202ENST00000409854 DENND4BO75064 1496 aaPredicted RBP8.16□□□□□ -1.1
EPHA4-202ENST00000409854 RRP7BPQ9NSQ0 103 aa8.16□□□□□ -1.1
EPHA4-202ENST00000409854 KDM5DQ9BY66 1539 aa8.16□□□□□ -1.1
EPHA4-202ENST00000409854 ZFYVE16Q7Z3T8 1539 aa8.15□□□□□ -1.1
EPHA4-202ENST00000409854 UNC13BO14795 1591 aa8.15□□□□□ -1.1
EPHA4-202ENST00000409854 EFCAB2Q5VUJ9 269 aa8.15□□□□□ -1.1
EPHA4-202ENST00000409854 HNRNPMP52272 730 aaKnown RBP eCLIP8.15□□□□□ -1.11
EPHA4-202ENST00000409854 KIF13AQ9H1H9 1805 aa8.14□□□□□ -1.11
EPHA4-202ENST00000409854 PPRC1Q5VV67 1664 aaKnown RBP8.14□□□□□ -1.11
EPHA4-202ENST00000409854 TRAPPC8Q9Y2L5 1435 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 KDM5CP41229 1560 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 DUOX2Q9NRD8 1548 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 RTEL1-TNFRSF6BF6WH68 1400 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 ANKRD50Q9ULJ7 1429 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 ADGRL1O94910 1474 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 CD109Q6YHK3 1445 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 CYB5RLQ6IPT4 315 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 PZPP20742 1482 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 NEO1Q92859 1461 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 KIDINS220Q9ULH0 1771 aa8.13□□□□□ -1.11
EPHA4-202ENST00000409854 ATP7AQ04656 1500 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 KIF15Q9NS87 1388 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 TSPY4P0CV99 314 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 TSPY10P0CW01 314 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 RICTORQ6R327 1708 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 EIF2AK4Q9P2K8 1649 aaKnown RBP8.12□□□□□ -1.11
EPHA4-202ENST00000409854 MAGI2Q86UL8 1455 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 DEPDC5O75140 1603 aa8.12□□□□□ -1.11
EPHA4-202ENST00000409854 IQGAP3Q86VI3 1631 aa8.11□□□□□ -1.11
EPHA4-202ENST00000409854 ERBINQ96RT1 1412 aa8.11□□□□□ -1.11
EPHA4-202ENST00000409854 BCORL1Q5H9F3 1711 aa8.1□□□□□ -1.11
EPHA4-202ENST00000409854 ZNF518AQ6AHZ1 1483 aa8.1□□□□□ -1.11
EPHA4-202ENST00000409854 HECW2Q9P2P5 1572 aa8.1□□□□□ -1.11
EPHA4-202ENST00000409854 SCAPERQ9BY12 1400 aa8.1□□□□□ -1.11
EPHA4-202ENST00000409854 POGZQ7Z3K3 1410 aa8.09□□□□□ -1.11
EPHA4-202ENST00000409854 FRMPD1Q5SYB0 1578 aa8.08□□□□□ -1.12
EPHA4-202ENST00000409854 TSPOAP1O95153 1857 aa8.08□□□□□ -1.12
EPHA4-202ENST00000409854 FAM135AQ9P2D6 1515 aa8.07□□□□□ -1.12
EPHA4-202ENST00000409854 ABCA6Q8N139 1617 aa8.07□□□□□ -1.12
EPHA4-202ENST00000409854 MPHOSPH9Q99550 1183 aa8.07□□□□□ -1.12
EPHA4-202ENST00000409854 MLH3Q9UHC1 1453 aa8.07□□□□□ -1.12
EPHA4-202ENST00000409854 TIMELESSQ9UNS1 1208 aa8.07□□□□□ -1.12
EPHA4-202ENST00000409854 RNF17Q9BXT8 1623 aaKnown RBP8.07□□□□□ -1.12
EPHA4-202ENST00000409854 ZMYM4Q5VZL5 1548 aa8.06□□□□□ -1.12
EPHA4-202ENST00000409854 VWDEQ8N2E2 1590 aa8.06□□□□□ -1.12
EPHA4-202ENST00000409854 MROH1Q8NDA8 1641 aa8.06□□□□□ -1.12
EPHA4-202ENST00000409854 SPAG9O60271 1321 aaKnown RBP8.06□□□□□ -1.12
EPHA4-202ENST00000409854 TRIM52Q96A61 297 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms