RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ATMINO43313 823 aaPredicted RBP9.81□□□□□ -0.84
CLK1-202ENST00000409403 PDE4AP27815 886 aa9.81□□□□□ -0.84
CLK1-202ENST00000409403 E2F4Q16254 413 aa9.81□□□□□ -0.84
CLK1-202ENST00000409403 ARHGEF1Q92888 912 aaKnown RBP9.8□□□□□ -0.84
CLK1-202ENST00000409403 LARP6Q9BRS8 491 aaKnown RBP9.8□□□□□ -0.84
CLK1-202ENST00000409403 CRISPLD2Q9H0B8 497 aa9.79□□□□□ -0.84
CLK1-202ENST00000409403 MFSD10Q14728 455 aa9.77□□□□□ -0.84
CLK1-202ENST00000409403 ATN1P54259 1190 aaPredicted RBP9.76□□□□□ -0.85
CLK1-202ENST00000409403 DDX27Q96GQ7 796 aaKnown RBP9.76□□□□□ -0.85
CLK1-202ENST00000409403 SLC39A7Q92504 469 aa9.74□□□□□ -0.85
CLK1-202ENST00000409403 METRNQ9UJH8 293 aa9.74□□□□□ -0.85
CLK1-202ENST00000409403 POTEB2H3BUK9 544 aa9.73□□□□□ -0.85
CLK1-202ENST00000409403 C7P10643 843 aa9.73□□□□□ -0.85
CLK1-202ENST00000409403 TULP1O00294 542 aaPredicted RBP9.71□□□□□ -0.86
CLK1-202ENST00000409403 IER5LQ5T953 404 aa9.71□□□□□ -0.86
CLK1-202ENST00000409403 DPY19L2Q6NUT2 758 aa9.71□□□□□ -0.86
CLK1-202ENST00000409403 PDCD7Q8N8D1 485 aaKnown RBP9.71□□□□□ -0.86
CLK1-202ENST00000409403 THOC2Q8NI27 1593 aaKnown RBP9.71□□□□□ -0.86
CLK1-202ENST00000409403 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.7□□□□□ -0.86
CLK1-202ENST00000409403 IRX5P78411 483 aaPredicted RBP9.69□□□□□ -0.86
CLK1-202ENST00000409403 LMOD2Q6P5Q4 547 aa9.69□□□□□ -0.86
CLK1-202ENST00000409403 GPHNQ9NQX3 736 aaPredicted RBP9.69□□□□□ -0.86
CLK1-202ENST00000409403 CAMK2BQ13554 666 aa9.68□□□□□ -0.86
CLK1-202ENST00000409403 MICALL2Q8IY33 904 aa9.68□□□□□ -0.86
CLK1-202ENST00000409403 OCEL1Q9H607 264 aa9.68□□□□□ -0.86
CLK1-202ENST00000409403 ARIH1Q9Y4X5 557 aaPredicted RBP9.68□□□□□ -0.86
CLK1-202ENST00000409403 PPP1R15BQ5SWA1 713 aa9.67□□□□□ -0.86
CLK1-202ENST00000409403 SEMA3EO15041 775 aa9.66□□□□□ -0.86
CLK1-202ENST00000409403 OTUD5Q96G74 571 aa9.66□□□□□ -0.86
CLK1-202ENST00000409403 RIMBP3CA6NJZ7 1639 aa9.66□□□□□ -0.86
CLK1-202ENST00000409403 RIMBP3BA6NNM3 1639 aa9.66□□□□□ -0.86
CLK1-202ENST00000409403 RIMBP3Q9UFD9 1639 aa9.66□□□□□ -0.86
CLK1-202ENST00000409403 TESPA1A2RU30 521 aaPredicted RBP9.65□□□□□ -0.86
CLK1-202ENST00000409403 BAZ1AQ9NRL2 1556 aaPredicted RBP9.63□□□□□ -0.87
CLK1-202ENST00000409403 G3V3G9 751 aa9.63□□□□□ -0.87
CLK1-202ENST00000409403 PLCG2P16885 1265 aa9.63□□□□□ -0.87
CLK1-202ENST00000409403 TMC2Q8TDI7 906 aa9.63□□□□□ -0.87
CLK1-202ENST00000409403 TMEM121BQ9BXQ6 578 aaPredicted RBP9.63□□□□□ -0.87
CLK1-202ENST00000409403 BOLA1Q9Y3E2 137 aa9.63□□□□□ -0.87
CLK1-202ENST00000409403 POTEFA5A3E0 1075 aa9.61□□□□□ -0.87
CLK1-202ENST00000409403 POTEMA6NI47 508 aa9.61□□□□□ -0.87
CLK1-202ENST00000409403 POTEJP0CG39 1038 aa9.61□□□□□ -0.87
CLK1-202ENST00000409403 DSG2Q14126 1118 aa9.61□□□□□ -0.87
CLK1-202ENST00000409403 FOXK1P85037 733 aa9.6□□□□□ -0.87
CLK1-202ENST00000409403 SMYD5Q6GMV2 418 aa9.6□□□□□ -0.87
CLK1-202ENST00000409403 L3MBTL3Q96JM7 780 aaPredicted RBP9.59□□□□□ -0.87
CLK1-202ENST00000409403 COLQQ9Y215 455 aaPredicted RBP9.58□□□□□ -0.88
CLK1-202ENST00000409403 SEC24BO95487 1268 aa9.58□□□□□ -0.88
CLK1-202ENST00000409403 C2orf72A6NCS6 295 aa9.56□□□□□ -0.88
CLK1-202ENST00000409403 EMILIN3Q9NT22 766 aa9.56□□□□□ -0.88
CLK1-202ENST00000409403 NESP48681 1621 aa9.56□□□□□ -0.88
CLK1-202ENST00000409403 KIF3CO14782 793 aa9.55□□□□□ -0.88
CLK1-202ENST00000409403 MAMSTRQ6ZN01 415 aa9.55□□□□□ -0.88
CLK1-202ENST00000409403 DPYSL4O14531 572 aa9.55□□□□□ -0.88
CLK1-202ENST00000409403 PLPP6Q8IY26 295 aa9.55□□□□□ -0.88
CLK1-202ENST00000409403 SCRIBQ14160 1630 aa9.54□□□□□ -0.88
CLK1-202ENST00000409403 POTEGQ6S5H5 508 aa9.54□□□□□ -0.88
CLK1-202ENST00000409403 ZC3H15Q8WU90 426 aaKnown RBP9.54□□□□□ -0.88
CLK1-202ENST00000409403 PCDH10Q9P2E7 1040 aa9.54□□□□□ -0.88
CLK1-202ENST00000409403 SMARCA2P51531 1590 aa9.53□□□□□ -0.88
CLK1-202ENST00000409403 MYO15BQ96JP2 1530 aa9.53□□□□□ -0.88
CLK1-202ENST00000409403 SPDYE16A6NNV3 312 aaPredicted RBP9.52□□□□□ -0.89
CLK1-202ENST00000409403 PDIA6Q15084 440 aa9.51□□□□□ -0.89
CLK1-202ENST00000409403 SCUBE2Q9NQ36 999 aa9.51□□□□□ -0.89
CLK1-202ENST00000409403 KIF21AQ7Z4S6 1674 aa9.5□□□□□ -0.89
CLK1-202ENST00000409403 MLLT3P42568 568 aaPredicted RBP9.49□□□□□ -0.89
CLK1-202ENST00000409403 TMEM92Q6UXU6 159 aa9.48□□□□□ -0.89
CLK1-202ENST00000409403 MAP3K9P80192 1104 aa9.46□□□□□ -0.89
CLK1-202ENST00000409403 ARHGEF11O15085 1522 aa9.46□□□□□ -0.9
CLK1-202ENST00000409403 RBM26Q5T8P6 1007 aaKnown RBP9.45□□□□□ -0.9
CLK1-202ENST00000409403 ZMYND10O75800 440 aa9.45□□□□□ -0.9
CLK1-202ENST00000409403 C3orf67Q6ZVT6 689 aa9.44□□□□□ -0.9
CLK1-202ENST00000409403 GPIHBP1Q8IV16 184 aa9.43□□□□□ -0.9
CLK1-202ENST00000409403 UPF1Q92900 1129 aaKnown RBP eCLIP9.43□□□□□ -0.9
CLK1-202ENST00000409403 OXER1Q8TDS5 423 aa9.42□□□□□ -0.9
CLK1-202ENST00000409403 SLC24A3Q9HC58 644 aa9.42□□□□□ -0.9
CLK1-202ENST00000409403 BARGINQ6ZT62 677 aa9.4□□□□□ -0.9
CLK1-202ENST00000409403 TBC1D12O60347 775 aa9.39□□□□□ -0.91
CLK1-202ENST00000409403 GRXCR2A6NFK2 248 aa9.38□□□□□ -0.91
CLK1-202ENST00000409403 BRPF1P55201 1214 aaPredicted RBP9.38□□□□□ -0.91
CLK1-202ENST00000409403 TMEM132AQ24JP5 1023 aa9.36□□□□□ -0.91
CLK1-202ENST00000409403 PTGER2P43116 358 aa9.36□□□□□ -0.91
CLK1-202ENST00000409403 SLAIN1Q8ND83 568 aa9.35□□□□□ -0.91
CLK1-202ENST00000409403 PTCD2Q8WV60 388 aaKnown RBP9.35□□□□□ -0.91
CLK1-202ENST00000409403 ZNF316A6NFI3 1004 aaPredicted RBP9.34□□□□□ -0.91
CLK1-202ENST00000409403 EVI5O60447 810 aa9.34□□□□□ -0.91
CLK1-202ENST00000409403 SLC34A2O95436 690 aa9.34□□□□□ -0.91
CLK1-202ENST00000409403 NEUROD2Q15784 382 aa9.34□□□□□ -0.91
CLK1-202ENST00000409403 FAM163AQ96GL9 167 aaPredicted RBP9.34□□□□□ -0.91
CLK1-202ENST00000409403 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.34□□□□□ -0.91
CLK1-202ENST00000409403 LCE2DQ5TA82 110 aaPredicted RBP9.33□□□□□ -0.92
CLK1-202ENST00000409403 CYB5RLQ6IPT4 315 aa9.33□□□□□ -0.92
CLK1-202ENST00000409403 KRI1Q8N9T8 703 aaKnown RBP9.33□□□□□ -0.92
CLK1-202ENST00000409403 DDX12PQ92771 950 aa9.33□□□□□ -0.92
CLK1-202ENST00000409403 AK7Q96M32 723 aa9.32□□□□□ -0.92
CLK1-202ENST00000409403 OSBPP22059 807 aa9.32□□□□□ -0.92
CLK1-202ENST00000409403 ARAP1Q96P48 1450 aa9.31□□□□□ -0.92
CLK1-202ENST00000409403 NUTM2FA1L443 756 aa9.31□□□□□ -0.92
CLK1-202ENST00000409403 GPR37O15354 613 aa9.31□□□□□ -0.92
CLK1-202ENST00000409403 LMTK3Q96Q04 1460 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms